AT2G37570

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012789
Physical Location & Seq
Reverse (-)
15761295 .. 15763451
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37570.1

Sequence Viewer

Length: 1485 bp
ATGGAGAATCATCATCCTTCTACTCTATTGTCTATGGATTCAAGTGCTTCTTCTCATGAGGAGCTTGATTTGGAGATGAATAACAACAGGCAATCTCTGCTCTCTGGCCCTCCTGATATCAATTTACCTCTCTCAGCTGAGAGAAGTCCTCCTCCTCCGCCGTGGAATTTAGATGCTTGTGATATTTTGGATGTTGGGTTAGGTTCACAAGCTTATGAGACTGAGAATTACATGAGTGTTGTACCTAAGGTTGGGAGGAAATGTGCTAAACGTGTTGATAGTATCTGGGGTGCTTGGTTTTTCTTCAGTTTCTACTTCAAGCCTGCGTTAAACGAGAAATCAAAGGCGAAAATCGTCCGGGATAGTAATGGGATATCTGGTTTTGACAAGTCGGATTTGAAGCTTGATGTGTTTTTAGTTCAGCATGATATGGAGAATATGTATATGTGGGTGTTTAAGGAAAGACCTGAGAATGCACTAGGGAAGATGCAGTTGAGGAGTTACATGAATGGTCATTCTAGACAAGGGGATCGTTTGTTTCCATTTAGTGTTGAGAAAGGGTTTGTTAGGTCTCACAGAATGCAGAGGAAACACTACAGAGGTTTGTCGAATCCGCAGTGCGTTCATGGGATTGAGCTTGTTCCTTTGCCAAACCTCACGTGTCTAGATGAAGAAGAGAGGAAAAGGTGGATGGAGCTTACGGGTCGTGATTTGAATTTCACCATTCCACCTGAAGCTAGTGACTTTGGTTCTTGGAGAAACCTTCCCAACACTGACTTTGAGCTTGAGAGGCCTACACCTTCTTTGAAGAATCCTACTGCAAACCACTCTAAGAAACTACTCAATGGCTCGGGGCTCAATCTCTCGACTCAACCATCCAACCATTCTAATGGTGAAGCAACCGATTTATCTCCTTCGAGCCACAAGAAGAGGAAGGACTTGTTCTCAAATGGGATTCATGAGGAGGAGTGTTGCTTAACTGTAAACCCACAACCTCCTGTTATCGAAGCTCACCAGAATGAGCTACCTACTTGGTCAAACGAGTTTACTGGGGCCATGAAAAACGTTTATGGACCTGTTACTGCTGCAAAAACGATCTATGAGGACGAAGAAGGCTACTTGATCATAATCAGCCTTCCTTTTGTGGATTTGAACAGCGTTAAAGTCTCCTGGAGGAACACTCTCACACATGGAATCATAAAAGTTTCATGCCTCAGCACATCGCGCGTACCTTTCATAAAGAGACATGATAGAACATTCAAGTTGACTGATTCAGCCTCTGAGCATTGCCCGCCAGGTGAATTTGTCAGAGAGATCCCATTATCAAACCGAATCCCGGAAGATGCAAACATTGAAGCGTATTACGATGGACCTGGATCAGTTCTTGAGATACTTGTCCCAAAACTAAGAGCTGGCCCGGAAGAGCACGAGGTGCGGGTGTGTCTCCGTCCCAACCTCGGTGGAAACGATCTTATGCTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

494

Amino Acids

55.82

Weight (kDa)

5.97

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 87 - 253 6.6e-103 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 360 - 468 9.3e-56 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37570
fragaria_vesca FvH4_6g14050 FvH4_6g14050
malus_domestica MD04G1125700.v1.1
prunus_persica Prupe.6G252600_v2.0.a1 Prupe.6G252600_v2.0.a1 Prupe.6G252600_v2.0.a1
pyrus_communis pycom04g11300
rosa_chinensis RchiOBHm_Chr3g0466931
rosa_laevigata RLG00000024544
rosa_multiflora Rmu_sc0001193.1_g000013
rosa_roxburghii Rroxscaffold_6G00414050
rosa_rugosa Rorug03G0084200
rosa_samantha Rh3AG132200 Rh3BG153300 Rh3CG153300 Rh3DG154300
rosa_wichuraiana Rw3G012490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1225, 1227
AciI CCGC 4 cut(s) 158, 614, 1292, 1435
AclI AACGTT 1 cut(s) 1065
AclWI GGATC 3 cut(s) 537, 1309, 1384
AcsI RAATTY 3 cut(s) 166, 715, 1301
AcuI CTGAAG 2 cut(s) 289, 753
AcvI CACGTG 1 cut(s) 660
AdeI CACNNNGTG 1 cut(s) 1432
AfaI GTAC 2 cut(s) 243, 1230
AfiI CCNNNNNNNGG 3 cut(s) 251, 1336, 1457
AflIII ACRYGT 2 cut(s) 271, 659
AgsI TTSAA 8 cut(s) 42, 319, 400, 715, 808, 1153, 1261, 1355
AjnI CCWGG 3 cut(s) 1169, 1294, 1372
Alw21I GWGCWC 1 cut(s) 1428
Alw26I GTCTC 5 cut(s) 212, 576, 1171, 1237, 1448
AlwI GGATC 3 cut(s) 537, 1309, 1384
AlwNI CAGNNNCTG 1 cut(s) 1280
Ama87I CYCGRG 1 cut(s) 850
AoxI GGCC 4 cut(s) 106, 791, 1053, 1414
ApeKI GCWGC 1 cut(s) 1085
ApoI RAATTY 3 cut(s) 166, 715, 1301
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 5 cut(s) 107, 1053, 1073, 1370, 1415
AsuC2I CCSGG 3 cut(s) 359, 1337, 1418
AsuHPI GGTGA 4 cut(s) 712, 905, 1004, 1310
AvaI CYCGRG 1 cut(s) 850
AvaII GGWCC 2 cut(s) 1073, 1370
AxyI CCTNAGG 1 cut(s) 246
BanII GRGCYC 1 cut(s) 858
BauI CACGAG 1 cut(s) 1427
BbrPI CACGTG 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 1428
BbvCI CCTCAGC 1 cut(s) 1214
BbvI GCAGC 1 cut(s) 1072
BccI CCATC 3 cut(s) 685, 883, 1361
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 3 cut(s) 1171, 1296, 1374
BclI TGATCA 1 cut(s) 1122
BcnI CCSGG 3 cut(s) 359, 1337, 1418
BcoDI GTCTC 5 cut(s) 212, 576, 1171, 1237, 1448
BfaI CTAG 4 cut(s) 479, 519, 665, 738
BfmI CTRYAG 1 cut(s) 595
BisI GCNGC 1 cut(s) 1086
BlsI GCNGC 1 cut(s) 1087
Bme1390I CCNGG 6 cut(s) 359, 1171, 1296, 1337, 1374, 1418
Bme18I GGWCC 2 cut(s) 1073, 1370
BmeT110I CYCGRG 1 cut(s) 850
BmgT120I GGNCC 5 cut(s) 107, 1053, 1073, 1370, 1415
BmiI GGNNCC 1 cut(s) 1054
BmrFI CCNGG 6 cut(s) 359, 1171, 1296, 1337, 1374, 1418
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 3 cut(s) 163, 477, 1333
BmuI ACTGGG 1 cut(s) 1059
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 1165, 1197
BpmI CTGGAG 1 cut(s) 1192
Bpu10I CCTNAGC 1 cut(s) 1214
BpuEI CTTGAG 2 cut(s) 806, 1406
BpuMI CCSGG 3 cut(s) 359, 1337, 1418
BsaAI YACGTR 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 1127
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 161, 1456
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 1336, 1457
Bse1I ACTGG 1 cut(s) 1054
Bse21I CCTNAGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 1285
Bse8I GATNNNNATC 1 cut(s) 1127
BseBI CCWGG 3 cut(s) 1171, 1296, 1374
BseDI CCNNGG 2 cut(s) 161, 1456
BseGI GGATG 4 cut(s) 13, 196, 696, 875
BseJI GATNNNNATC 1 cut(s) 1127
BseLI CCNNNNNNNGG 3 cut(s) 251, 1336, 1457
BseMI GCAATG 1 cut(s) 1285
BseMII CTCAG 6 cut(s) 129, 147, 213, 459, 1228, 1272
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 6 cut(s) 74, 141, 144, 511, 977, 980
BseXI GCAGC 1 cut(s) 1072
Bsh1236I CGCG 2 cut(s) 1225, 1227
BshFI GGCC 4 cut(s) 108, 793, 1055, 1416
BsiHKAI GWGCWC 1 cut(s) 1428
BsiHKCI CYCGRG 1 cut(s) 850
BsiSI CCGG 3 cut(s) 358, 1337, 1418
BslFI GGGAC 2 cut(s) 1382, 1434
BslI CCNNNNNNNGG 3 cut(s) 251, 1336, 1457
BsmAI GTCTC 5 cut(s) 212, 576, 1171, 1237, 1448
BsmFI GGGAC 2 cut(s) 1382, 1434
BsmI GAATGC 2 cut(s) 478, 585
BsnI GGCC 4 cut(s) 108, 793, 1055, 1416
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 1 cut(s) 850
Bsp1286I GDGCHC 2 cut(s) 858, 1428
Bsp143I GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
BspACI CCGC 4 cut(s) 158, 614, 1292, 1435
BspANI GGCC 4 cut(s) 108, 793, 1055, 1416
BspCNI CTCAG 6 cut(s) 130, 146, 214, 460, 1227, 1273
BspFNI CGCG 2 cut(s) 1225, 1227
BspHI TCATGA 2 cut(s) 55, 958
BspLI GGNNCC 1 cut(s) 1054
BspPI GGATC 3 cut(s) 537, 1309, 1384
BspQI GCTCTTC 1 cut(s) 1416
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 1285
BsrI ACTGG 1 cut(s) 1054
BssECI CCNNGG 2 cut(s) 161, 1456
BssMI GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
BssSI CACGAG 1 cut(s) 1427
Bst2BI CACGAG 1 cut(s) 1427
Bst2UI CCWGG 3 cut(s) 1171, 1296, 1374
Bst4CI ACNGT 1 cut(s) 982
Bst6I CTCTTC 3 cut(s) 669, 923, 1416
BstAPI GCANNNNNTGC 2 cut(s) 97, 1432
BstBAI YACGTR 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 324, 1292, 1414
BstDEI CTNAG 9 cut(s) 133, 138, 222, 246, 468, 831, 1214, 1281, 1406
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 4 cut(s) 13, 196, 696, 875
BstFNI CGCG 2 cut(s) 1225, 1227
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 6 cut(s) 532, 1098, 1125, 1317, 1379, 1471
BstMAI GTCTC 5 cut(s) 212, 576, 1171, 1237, 1448
BstMBI GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
BstMWI GCNNNNNNNGC 5 cut(s) 97, 790, 1224, 1291, 1432
BstNI CCWGG 3 cut(s) 1171, 1296, 1374
BstSCI CCNGG 6 cut(s) 357, 1169, 1294, 1335, 1372, 1416
BstSFI CTRYAG 1 cut(s) 595
BstUI CGCG 2 cut(s) 1225, 1227
BstV1I GCAGC 1 cut(s) 1072
BstX2I RGATCY 1 cut(s) 1314
BstXI CCANNNNNNTGG 1 cut(s) 890
BstYI RGATCY 1 cut(s) 1314
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 4 cut(s) 108, 793, 1055, 1416
BtgI CCRYGG 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 1206
BtsCI GGATG 4 cut(s) 13, 196, 696, 875
BtsI GCAGTG 1 cut(s) 623
BtsIMutI CAGTG 2 cut(s) 623, 771
Cac8I GCNNGC 3 cut(s) 324, 1292, 1414
CaiI CAGNNNCTG 1 cut(s) 1280
CciI TCATGA 2 cut(s) 55, 958
CfoI GCGC 1 cut(s) 1227
Cfr13I GGNCC 5 cut(s) 107, 1053, 1073, 1370, 1415
Csp6I GTAC 2 cut(s) 242, 1229
CspCI CAANNNNNGTGG 2 cut(s) 1441, 1476
CviQI GTAC 2 cut(s) 242, 1229
DdeI CTNAG 9 cut(s) 133, 138, 222, 246, 468, 831, 1214, 1281, 1406
DpnI GATC 6 cut(s) 531, 1097, 1124, 1316, 1378, 1470
DpnII GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
DraIII CACNNNGTG 1 cut(s) 1432
Eam1104I CTCTTC 3 cut(s) 669, 923, 1416
EarI CTCTTC 3 cut(s) 669, 923, 1416
EciI GGCGGA 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 793
Eco24I GRGCYC 1 cut(s) 858
Eco31I GGTCTC 1 cut(s) 576
Eco32I GATATC 2 cut(s) 118, 375
Eco47I GGWCC 2 cut(s) 1073, 1370
Eco57I CTGAAG 2 cut(s) 289, 753
Eco72I CACGTG 1 cut(s) 660
Eco81I CCTNAGG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 850
EcoRII CCWGG 3 cut(s) 1169, 1294, 1372
EcoRV GATATC 2 cut(s) 118, 375
EcoT38I GRGCYC 1 cut(s) 858
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 2 cut(s) 1382, 1434
FauI CCCGC 2 cut(s) 1299, 1428
FbaI TGATCA 1 cut(s) 1122
Fnu4HI GCNGC 1 cut(s) 1086
FokI GGATG 3 cut(s) 203, 703, 862
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 1 cut(s) 1086
FspBI CTAG 4 cut(s) 479, 519, 665, 738
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 1 cut(s) 1086
GsuI CTGGAG 1 cut(s) 1192
HaeIII GGCC 4 cut(s) 108, 793, 1055, 1416
HapII CCGG 3 cut(s) 358, 1337, 1418
HhaI GCGC 1 cut(s) 1227
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HindIII AAGCTT 2 cut(s) 210, 401
HinfI GANTC 9 cut(s) 7, 38, 610, 811, 868, 955, 1194, 1271, 1332
HpaII CCGG 3 cut(s) 358, 1337, 1418
HphI GGTGA 4 cut(s) 712, 905, 1004, 1310
Hpy166II GTNNAC 4 cut(s) 206, 985, 1047, 1266
Hpy188I TCNGA 3 cut(s) 394, 1282, 1310
Hpy188III TCNNGA 8 cut(s) 56, 113, 519, 665, 707, 865, 959, 1385
Hpy8I GTNNAC 4 cut(s) 206, 985, 1047, 1266
HpyAV CCTTC 7 cut(s) 27, 773, 810, 924, 928, 1106, 1145
HpyCH4III ACNGT 1 cut(s) 982
HpyCH4IV ACGT 3 cut(s) 271, 659, 1065
HpyCH4V TGCA 6 cut(s) 476, 490, 583, 821, 1088, 1346
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 790, 1224, 1291, 1432
HpyF3I CTNAG 9 cut(s) 133, 138, 222, 246, 468, 831, 1214, 1281, 1406
HpySE526I ACGT 3 cut(s) 271, 659, 1065
HspAI GCGC 1 cut(s) 1225
Ksp22I TGATCA 1 cut(s) 1122
Kzo9I GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
LguI GCTCTTC 1 cut(s) 1416
LmnI GCTCC 2 cut(s) 61, 694
Lsp1109I GCAGC 1 cut(s) 1072
LweI GCATC 3 cut(s) 163, 477, 1333
MaeI CTAG 4 cut(s) 479, 519, 665, 738
MaeII ACGT 3 cut(s) 271, 659, 1065
MaeIII GTNAC 3 cut(s) 500, 740, 1078
MalI GATC 6 cut(s) 531, 1097, 1124, 1316, 1378, 1470
MboI GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
MflI RGATCY 1 cut(s) 1314
MhlI GDGCHC 2 cut(s) 858, 1428
MluCI AATT 5 cut(s) 121, 166, 226, 715, 1301
MlyI GAGTC 1 cut(s) 862
MmeI TCCRAC 2 cut(s) 372, 903
MseI TTAA 5 cut(s) 329, 456, 977, 1161, 1483
MslI CAYNNNNRTG 2 cut(s) 888, 1017
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 358, 1337, 1418
MspR9I CCNGG 6 cut(s) 359, 1171, 1296, 1337, 1374, 1418
Mva1269I GAATGC 2 cut(s) 478, 585
MvaI CCWGG 3 cut(s) 1171, 1296, 1374
MvnI CGCG 2 cut(s) 1225, 1227
MwoI GCNNNNNNNGC 5 cut(s) 97, 790, 1224, 1291, 1432
NciI CCSGG 3 cut(s) 359, 1337, 1418
NdeII GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
NlaIV GGNNCC 1 cut(s) 1054
NmuCI GTSAC 1 cut(s) 740
PagI TCATGA 2 cut(s) 55, 958
PceI AGGCCT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 1416
PcsI WCGNNNNNNNCGW 1 cut(s) 1464
PctI GAATGC 2 cut(s) 478, 585
PfeI GAWTC 8 cut(s) 7, 38, 610, 811, 955, 1194, 1271, 1332
PfoI TCCNGGA 3 cut(s) 357, 1169, 1335
PkrI GCNGC 1 cut(s) 1087
PleI GAGTC 1 cut(s) 862
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
PpsI GAGTC 1 cut(s) 862
Ppu21I YACGTR 1 cut(s) 660
Psp1406I AACGTT 1 cut(s) 1065
Psp6I CCWGG 3 cut(s) 1169, 1294, 1372
PspCI CACGTG 1 cut(s) 660
PspGI CCWGG 3 cut(s) 1169, 1294, 1372
PspN4I GGNNCC 1 cut(s) 1054
PspPI GGNCC 5 cut(s) 107, 1053, 1073, 1370, 1415
PstNI CAGNNNCTG 1 cut(s) 1280
PsuI RGATCY 1 cut(s) 1314
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 243, 1230
RsaNI GTAC 2 cut(s) 242, 1229
RseI CAYNNNNRTG 2 cut(s) 888, 1017
SapI GCTCTTC 1 cut(s) 1416
SaqAI TTAA 5 cut(s) 329, 456, 977, 1161, 1483
SatI GCNGC 1 cut(s) 1086
Sau3AI GATC 6 cut(s) 529, 1095, 1122, 1314, 1376, 1468
Sau96I GGNCC 5 cut(s) 107, 1053, 1073, 1370, 1415
SchI GAGTC 1 cut(s) 862
ScrFI CCNGG 6 cut(s) 359, 1171, 1296, 1337, 1374, 1418
SduI GDGCHC 2 cut(s) 858, 1428
SfaNI GCATC 3 cut(s) 163, 477, 1333
SfcI CTRYAG 1 cut(s) 595
SinI GGWCC 2 cut(s) 1073, 1370
SmiMI CAYNNNNRTG 2 cut(s) 888, 1017
SmlI CTYRAG 2 cut(s) 785, 1385
SmoI CTYRAG 2 cut(s) 785, 1385
Sse9I AATT 5 cut(s) 121, 166, 226, 715, 1301
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 4 cut(s) 158, 614, 1292, 1435
SspMI CTAG 4 cut(s) 479, 519, 665, 738
StuI AGGCCT 1 cut(s) 793
StyD4I CCNGG 6 cut(s) 357, 1169, 1294, 1335, 1372, 1416
TaaI ACNGT 1 cut(s) 982
TaiI ACGT 3 cut(s) 274, 662, 1068
TaqI TCGA 4 cut(s) 608, 866, 917, 1005
TasI AATT 5 cut(s) 121, 166, 226, 715, 1301
TfiI GAWTC 8 cut(s) 7, 38, 610, 811, 955, 1194, 1271, 1332
Tru1I TTAA 5 cut(s) 329, 456, 977, 1161, 1483
Tru9I TTAA 5 cut(s) 329, 456, 977, 1161, 1483
TscAI CASTG 2 cut(s) 623, 778
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 1 cut(s) 1085
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 8 cut(s) 92, 521, 614, 684, 947, 1073, 1197, 1225
TspGWI ACGGA 1 cut(s) 1436
TspRI CASTG 2 cut(s) 623, 778
VpaK11BI GGWCC 2 cut(s) 1073, 1370
XapI RAATTY 3 cut(s) 166, 715, 1301
XbaI TCTAGA 2 cut(s) 518, 664
XspI CTAG 4 cut(s) 479, 519, 665, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.