Rw3G012490

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012789
Physical Location & Seq
Forward (+)
12256890 .. 12258415
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012490.1

Sequence Viewer

Length: 1473 bp
ATGGTTGATTCCCTCCTCACCGCCCTGTCAATGGAGAATAATCATCACCCATCAACGCTCTTGTCAATGGATTCCAGTGCCTCCTCACACGACGAATTGGATTTGGAAATGAATCGGCAGATCATACTTTCTCGTCCACCTGACATCAACTTGCCCCTGTCGGCCGAGCGCAGCCCGCCGCCGCCGTCATGGAATTCGGAACCCTGTGATATTCTGGATGTTGGGCTTGGTCCGCAGGTTTACGAGACTGAGAGCTTACTTGCGGTCCCCAAGGTTGGAAGGAAATGTGCCAAGCGGATAGACAGCATATGGGGTGCCTGGTTTTTCTTCAGTTTCTACTTCAAGCCTGCATTGCAGGAGAAATCAAAGGCGAAGATTGTCCGGGACAGTAATGGGGTATCAGGGTTTGAGAAAACTGATCTCAAGCTTGATGTTTTCATGGTTCAGCACGACATGGAGAACATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAATGCATTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCCCGCCAAGGGGAGCGACCATTTCCATTTAGTGTTGACAAGGGTTTTGTTCGATCCCACAGGATGCAACGGAAGCATTATAGGGGCCTTTCAAATCCGCAGTGTGTTCATGGGATTGAGCTTGTCCGGGCACCTAATCTCATGGTTCTTGATGATGAAGAGCGCAAGAGGTGGATGGAGCTTACTGGAAGGGACATGAACTTCACGATCCCTATCGAAGCAGGTGATTTTAGCTCATGGAGAAACCTTCCAAATACAGATTTTGAGCTGGAGAGGCCACCAGCTCCAATAAAGACTGTGCCAAACAAGAAACTGCTGAACGGGTCTGGATTGAACTTGTCTACCCAGCCATCTAACAACAACCATTGCGAGGCAAATGGAAATGGAAATGGTAATGGAATGGACCTATCTCCTGTCAGTAGCAAGAGGAGGAAGGAGTTTTTCCCAACTGGGAATGATGATGACTGCTACTTGGGTGTTAATCCTCCTTCTGATCGGGTCCTGGATATGGAAATCAACCCAAATGAGTCGCAGTGGCTACATCAATTTAGTGGTGTAATGAAGAACGTTTATGGGCCTGTTACAGCTGCAAAGACAATCTATGAGGATGATGTAGGTTATTTGATCATTATCAGCTTACCCTTTGTGGATCTTCAGAGGGTGAAAGTTTCTTGGAGGAACACTCTCACTCATGGTATCATCAAGGTCTCTTGTATAAGCACATCTCGCATGCCATTCATTAAGAGACATGATCGTACTTTCAGGCTTACAGATCCTGCCTCTGAGCACTATGCTAACATAGAAGCTTATTACGACGGGCCAGGATCAGTGCTTGAGATTATGGTTCCAAAACTCCGTGTTGGACCAGAAGAACATGAGGTTCGTGTTTGCCTTCGCCCTCACCTTGGAGGCAACGATCTTATGTTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

490

Amino Acids

55.65

Weight (kDa)

6.33

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 95 - 261 7.2e-103 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 374 - 444 7.8e-35 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37570
fragaria_vesca FvH4_6g14050 FvH4_6g14050
malus_domestica MD04G1125700.v1.1
prunus_persica Prupe.6G252600_v2.0.a1 Prupe.6G252600_v2.0.a1 Prupe.6G252600_v2.0.a1
pyrus_communis pycom04g11300
rosa_chinensis RchiOBHm_Chr3g0466931
rosa_laevigata RLG00000024544
rosa_multiflora Rmu_sc0001193.1_g000013
rosa_roxburghii Rroxscaffold_6G00414050
rosa_rugosa Rorug03G0084200
rosa_samantha Rh3AG132200 Rh3BG153300 Rh3CG153300 Rh3DG154300
rosa_wichuraiana Rw3G012490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 752
Acc36I ACCTGC 2 cut(s) 226, 752
AccB1I GGYRCC 2 cut(s) 314, 670
AccI GTMKAC 1 cut(s) 881
AciI CCGC 9 cut(s) 21, 176, 179, 182, 233, 263, 295, 544, 638
AclI AACGTT 1 cut(s) 1107
AclWI GGATC 5 cut(s) 588, 742, 1197, 1307, 1372
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 313, 1178
AfaI GTAC 2 cut(s) 467, 1297
AfiI CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 910, 1048, 1445
AflIII ACRYGT 2 cut(s) 462, 468
AgsI TTSAA 4 cut(s) 343, 481, 633, 874
AjnI CCWGG 3 cut(s) 317, 1041, 1360
Alw21I GWGCWC 1 cut(s) 1329
Alw26I GTCTC 3 cut(s) 239, 1252, 1279
AlwI GGATC 5 cut(s) 588, 742, 1197, 1307, 1372
AlwNI CAGNNNCTG 1 cut(s) 1316
AoxI GGCC 6 cut(s) 162, 488, 625, 815, 1115, 1358
ApeKI GCWGC 3 cut(s) 171, 514, 1127
ApoI RAATTY 1 cut(s) 193
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspLEI GCGC 2 cut(s) 171, 705
AspS9I GGNCC 8 cut(s) 230, 265, 625, 943, 1039, 1115, 1358, 1403
AsuC2I CCSGG 2 cut(s) 383, 668
AsuHPI GGTGA 5 cut(s) 10, 38, 776, 1213, 1433
AvaII GGWCC 5 cut(s) 230, 265, 943, 1039, 1403
BaeGI GKGCMC 1 cut(s) 673
BanI GGYRCC 2 cut(s) 314, 670
Bbv12I GWGCWC 1 cut(s) 1329
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 3 cut(s) 183, 526, 1114
BccI CCATC 3 cut(s) 58, 709, 898
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 3 cut(s) 319, 1043, 1362
BclI TGATCA 1 cut(s) 1164
BcnI CCSGG 2 cut(s) 383, 668
BcoDI GTCTC 3 cut(s) 239, 1252, 1279
BfuAI ACCTGC 2 cut(s) 226, 752
BisI GCNGC 5 cut(s) 172, 179, 182, 515, 1128
BlsI GCNGC 5 cut(s) 173, 180, 183, 516, 1129
Bme1390I CCNGG 5 cut(s) 319, 383, 668, 1043, 1362
Bme18I GGWCC 5 cut(s) 230, 265, 943, 1039, 1403
BmgT120I GGNCC 8 cut(s) 230, 265, 625, 943, 1039, 1115, 1358, 1403
BmiI GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1040, 1386
BmrFI CCNGG 5 cut(s) 319, 383, 668, 1043, 1362
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 2 cut(s) 501, 594
BmuI ACTGGG 1 cut(s) 999
BplI GAGNNNNNCTC 2 cut(s) 1207, 1239
BpmI CTGGAG 1 cut(s) 830
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 407, 1394
BpuMI CCSGG 2 cut(s) 383, 668
BsaBI GATNNNNATC 2 cut(s) 752, 1169
BsaI GGTCTC 1 cut(s) 1252
BsaJI CCNNGG 3 cut(s) 270, 547, 1444
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 910, 1048, 1445
Bse1I ACTGG 3 cut(s) 75, 730, 994
Bse3DI GCAATG 2 cut(s) 350, 904
Bse8I GATNNNNATC 2 cut(s) 752, 1169
BseBI CCWGG 3 cut(s) 319, 1043, 1362
BseDI CCNNGG 3 cut(s) 270, 547, 1444
BseGI GGATG 4 cut(s) 223, 609, 720, 1153
BseJI GATNNNNATC 2 cut(s) 752, 1169
BseLI CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 910, 1048, 1445
BseMI GCAATG 2 cut(s) 350, 904
BseMII CTCAG 3 cut(s) 240, 509, 1314
BseNI ACTGG 3 cut(s) 75, 730, 994
BseRI GAGGAG 4 cut(s) 5, 73, 535, 982
BseSI GKGCMC 1 cut(s) 673
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 183, 526, 1114
BseYI CCCAGC 1 cut(s) 885
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 6 cut(s) 164, 490, 627, 817, 1117, 1360
BshNI GGYRCC 2 cut(s) 314, 670
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 1329
BsiSI CCGG 3 cut(s) 382, 491, 667
BslFI GGGAC 3 cut(s) 251, 398, 746
BslI CCNNNNNNNGG 7 cut(s) 31, 275, 549, 550, 910, 1048, 1445
BsmAI GTCTC 3 cut(s) 239, 1252, 1279
BsmFI GGGAC 3 cut(s) 251, 398, 746
BsmI GAATGC 2 cut(s) 502, 538
BsnI GGCC 6 cut(s) 164, 490, 627, 817, 1117, 1360
Bso31I GGTCTC 1 cut(s) 1252
Bsp1286I GDGCHC 2 cut(s) 673, 1329
Bsp1407I TGTACA 1 cut(s) 465
BspACI CCGC 9 cut(s) 21, 176, 179, 182, 233, 263, 295, 544, 638
BspANI GGCC 6 cut(s) 164, 490, 627, 817, 1117, 1360
BspCNI CTCAG 3 cut(s) 241, 510, 1315
BspLI GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1040, 1386
BspMI ACCTGC 2 cut(s) 226, 752
BspPI GGATC 5 cut(s) 588, 742, 1197, 1307, 1372
BspQI GCTCTTC 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 314, 670
BspTNI GGTCTC 1 cut(s) 1252
BsrDI GCAATG 2 cut(s) 350, 904
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 3 cut(s) 75, 730, 994
BssECI CCNNGG 3 cut(s) 270, 547, 1444
BssT1I CCWWGG 3 cut(s) 270, 547, 1444
Bst2UI CCWGG 3 cut(s) 319, 1043, 1362
Bst4CI ACNGT 2 cut(s) 389, 838
Bst6I CTCTTC 1 cut(s) 693
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 3 cut(s) 176, 348, 1271
BstDEI CTNAG 3 cut(s) 249, 518, 1323
BstF5I GGATG 4 cut(s) 223, 609, 720, 1153
BstHHI GCGC 2 cut(s) 171, 705
BstMAI GTCTC 3 cut(s) 239, 1252, 1279
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 175, 232, 352, 613, 814, 1266
BstNI CCWGG 3 cut(s) 319, 1043, 1362
BstNSI RCATGY 3 cut(s) 466, 472, 1273
BstSCI CCNGG 5 cut(s) 317, 381, 666, 1041, 1360
BstSLI GKGCMC 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 183, 526, 1114
BstX2I RGATCY 2 cut(s) 1189, 1312
BstYI RGATCY 2 cut(s) 1189, 1312
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 6 cut(s) 164, 490, 627, 817, 1117, 1360
BtsCI GGATG 4 cut(s) 223, 609, 720, 1153
BtsI GCAGTG 2 cut(s) 647, 1079
BtsIMutI CAGTG 4 cut(s) 82, 647, 1079, 1374
BveI ACCTGC 2 cut(s) 226, 752
Cac8I GCNNGC 3 cut(s) 176, 348, 1271
CaiI CAGNNNCTG 1 cut(s) 1316
CfoI GCGC 2 cut(s) 171, 705
Cfr13I GGNCC 8 cut(s) 230, 265, 625, 943, 1039, 1115, 1358, 1403
Csp6I GTAC 2 cut(s) 466, 1296
CviQI GTAC 2 cut(s) 466, 1296
DdeI CTNAG 3 cut(s) 249, 518, 1323
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 3 cut(s) 270, 547, 1444
Eco31I GGTCTC 1 cut(s) 1252
Eco47I GGWCC 5 cut(s) 230, 265, 943, 1039, 1403
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 313, 1178
EcoO109I RGGNCCY 2 cut(s) 625, 1039
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 317, 1041, 1360
EcoT14I CCWWGG 3 cut(s) 270, 547, 1444
EcoT22I ATGCAT 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 270, 547, 1444
FaqI GGGAC 3 cut(s) 251, 398, 746
FauI CCCGC 2 cut(s) 183, 551
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 1164
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 5 cut(s) 172, 179, 182, 515, 1128
FokI GGATG 4 cut(s) 230, 616, 727, 1160
Fsp4HI GCNGC 5 cut(s) 172, 179, 182, 515, 1128
GlaI GCGC 2 cut(s) 170, 704
GluI GCNGC 5 cut(s) 172, 179, 182, 515, 1128
GsaI CCCAGC 1 cut(s) 889
GsuI CTGGAG 1 cut(s) 830
HaeIII GGCC 6 cut(s) 164, 490, 627, 817, 1117, 1360
HapII CCGG 3 cut(s) 382, 491, 667
HhaI GCGC 2 cut(s) 171, 705
Hin6I GCGC 2 cut(s) 169, 703
HinP1I GCGC 2 cut(s) 169, 703
HincII GTYRAC 2 cut(s) 577, 1467
HindII GTYRAC 2 cut(s) 577, 1467
HindIII AAGCTT 2 cut(s) 425, 1344
HinfI GANTC 4 cut(s) 8, 71, 112, 1067
HpaII CCGG 3 cut(s) 382, 491, 667
HphI GGTGA 5 cut(s) 10, 38, 776, 1213, 1433
Hpy166II GTNNAC 5 cut(s) 137, 241, 577, 882, 1467
Hpy188I TCNGA 4 cut(s) 199, 1033, 1197, 1324
Hpy188III TCNNGA 4 cut(s) 215, 689, 745, 867
Hpy8I GTNNAC 5 cut(s) 137, 241, 577, 882, 1467
Hpy99I CGWCG 2 cut(s) 95, 1358
HpyAV CCTTC 6 cut(s) 273, 723, 797, 967, 1038, 1442
HpyCH4III ACNGT 2 cut(s) 389, 838
HpyCH4IV ACGT 1 cut(s) 1107
HpyCH4V TGCA 6 cut(s) 350, 355, 500, 514, 607, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 232, 352, 613, 814, 1266
HpyF3I CTNAG 3 cut(s) 249, 518, 1323
HpySE526I ACGT 1 cut(s) 1107
HspAI GCGC 2 cut(s) 169, 703
Ksp22I TGATCA 1 cut(s) 1164
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 3 cut(s) 553, 718, 829
Lsp1109I GCAGC 3 cut(s) 183, 526, 1114
LweI GCATC 2 cut(s) 501, 594
MaeII ACGT 1 cut(s) 1107
MaeIII GTNAC 2 cut(s) 524, 1120
MboII GAAGA 7 cut(s) 319, 385, 520, 710, 1114, 1184, 1421
MflI RGATCY 2 cut(s) 1189, 1312
MhlI GDGCHC 2 cut(s) 673, 1329
MluCI AATT 3 cut(s) 95, 193, 1085
MlyI GAGTC 1 cut(s) 1076
MmeI TCCRAC 2 cut(s) 256, 1381
Mph1103I ATGCAT 1 cut(s) 502
MseI TTAA 3 cut(s) 1020, 1281, 1471
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 517, 1127
MspI CCGG 3 cut(s) 382, 491, 667
MspR9I CCNGG 5 cut(s) 319, 383, 668, 1043, 1362
Mva1269I GAATGC 2 cut(s) 502, 538
MvaI CCWGG 3 cut(s) 319, 1043, 1362
MwoI GCNNNNNNNGC 6 cut(s) 175, 232, 352, 613, 814, 1266
NciI CCSGG 2 cut(s) 383, 668
NdeI CATATG 1 cut(s) 308
NlaIV GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1040, 1386
NmeAIII GCCGAG 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 3 cut(s) 466, 472, 1273
PaeI GCATGC 1 cut(s) 1273
PaqCI CACCTGC 1 cut(s) 752
PciI ACATGT 2 cut(s) 462, 468
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 2 cut(s) 502, 538
PfeI GAWTC 3 cut(s) 8, 71, 112
PfoI TCCNGGA 2 cut(s) 381, 1041
PkrI GCNGC 5 cut(s) 173, 180, 183, 516, 1129
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
PpuMI RGGWCCY 1 cut(s) 1039
PscI ACATGT 2 cut(s) 462, 468
Psp1406I AACGTT 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 1039
Psp6I CCWGG 3 cut(s) 317, 1041, 1360
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 3 cut(s) 317, 1041, 1360
PspN4I GGNNCC 7 cut(s) 201, 267, 316, 626, 672, 1040, 1386
PspPI GGNCC 8 cut(s) 230, 265, 625, 943, 1039, 1115, 1358, 1403
PspPPI RGGWCCY 1 cut(s) 1039
PstNI CAGNNNCTG 1 cut(s) 1316
PsuI RGATCY 2 cut(s) 1189, 1312
PvuII CAGCTG 2 cut(s) 517, 1127
RsaI GTAC 2 cut(s) 467, 1297
RsaNI GTAC 2 cut(s) 466, 1296
RseI CAYNNNNRTG 1 cut(s) 467
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 1020, 1281, 1471
SatI GCNGC 5 cut(s) 172, 179, 182, 515, 1128
Sau96I GGNCC 8 cut(s) 230, 265, 625, 943, 1039, 1115, 1358, 1403
SchI GAGTC 1 cut(s) 1076
ScrFI CCNGG 5 cut(s) 319, 383, 668, 1043, 1362
SduI GDGCHC 2 cut(s) 673, 1329
SfaNI GCATC 2 cut(s) 501, 594
SinI GGWCC 5 cut(s) 230, 265, 943, 1039, 1403
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 422, 1373
SmoI CTYRAG 2 cut(s) 422, 1373
SphI GCATGC 1 cut(s) 1273
Sse9I AATT 3 cut(s) 95, 193, 1085
SsiI CCGC 9 cut(s) 21, 176, 179, 182, 233, 263, 295, 544, 638
StyD4I CCNGG 5 cut(s) 317, 381, 666, 1041, 1360
StyI CCWWGG 3 cut(s) 270, 547, 1444
TaaI ACNGT 2 cut(s) 389, 838
TaiI ACGT 1 cut(s) 1110
TaqI TCGA 2 cut(s) 592, 756
TasI AATT 3 cut(s) 95, 193, 1085
TatI WGTACW 1 cut(s) 465
TauI GCSGC 2 cut(s) 181, 184
TfiI GAWTC 3 cut(s) 8, 71, 112
Tru1I TTAA 3 cut(s) 1020, 1281, 1471
Tru9I TTAA 3 cut(s) 1020, 1281, 1471
TscAI CASTG 4 cut(s) 82, 647, 1079, 1374
TseI GCWGC 3 cut(s) 171, 514, 1127
TspDTI ATGAA 8 cut(s) 125, 427, 545, 638, 711, 752, 1115, 1267
TspGWI ACGGA 2 cut(s) 625, 1385
TspRI CASTG 4 cut(s) 82, 647, 1079, 1374
VpaK11BI GGWCC 5 cut(s) 230, 265, 943, 1039, 1403
XapI RAATTY 1 cut(s) 193
XceI RCATGY 3 cut(s) 466, 472, 1273
XmiI GTMKAC 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.