FvH4_6g14050

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012789
Physical Location & Seq
Forward (+)
8615560 .. 8618242
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14050.t1

Sequence Viewer

Length: 1545 bp
ATGGTTGATTCTCTGCTCACTGCCCTGTCAATGGAGAATAATCATCACCCTTCAACGCTCTTGTCAATGGATTCCAGTGCCTCCTCTCACGACGAATTGGATTTGGAAATGAATCGGCAGATCATACTTTCCCGTCCACCCGACATCAACTTGCCCCTGTCGGCCGAGCGCAGCCCGCCTCCCCCATCATGGAATTCGGAACCCTGTGATATTCTGGATGTGGGGCTTGGTCCGCAGGTTTACGAGACGGAGAGCTTGCTTGCGATCCCCAAGGTTGGGAGGAAATGTGCCAAGCGGATAGACAGCATATGGGGTGCCTGGTTTTTCTTCAGTTTCTACTTCAAGCCTGCATTGAATGAGAAGTCGAAGGCGAAGATTGTCCGGGACAGTAATGGCGTATCAGGGTTTGAGAAAAGTGATCTCAAGCTTGATGTTTTTATGGTTCAGCACGACATGGAGAATATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAATGCGTTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCCCGCCAAGGGGAGCGACCATTTCCATTTAGTGTTGACAAGGGTTTTGTTCGATCCCACAGGATGCAGCGGAAGCATTATAGGGGCCTTTCAAATCCGCAGTGTGTGCATGGGATTGAGCTTGTCCGGGCACCTAATCTCATGGTTCTTGATGATGATGAGCGCAAGAGGTGGATGGAGCTTACTGGAAGGGACATGAACTTCACGATCCCTATTGAAGCAGGTGATTTTAGCTCCTGGAGAAACCTTCCAAATACAGATTTTGAGCTGGAGAGGCCACCACCTCCGATAAAGACTGTGATAAACAATCACTCAAAGAAATTGCTGAATGGATCTGGATTAAACTTGTCTACACAGCCATCTAACAACAACCATTGCGAGGCAAATGGAAATGGTAATGGAAATGGTAATGGTAATGGAATGGACCTATCTCCTGTCAGTAGCAAGAGGAGGAAGGAGTTTTTCCCAACTGGGAATGATGATGACTGCTACTTGGGTGTTAATCCTCCTGATCGGGTCCCGGATATGGAAGTCAACCCAATTGAGTCGCAGTGGCTACATCAGTTCAGTGGTGTAATGAAGAACGTTTATGGGCCTGTTACAGCTGCAAAGACAATCTATGAGGATGATGTAGGTTATTTGATCATTATCAGCCTACCATTTGTGGATCTTCAGAGGGTAAAAGTTTCTTGGAGGAACACTCTCACTCATGGTATCATCAAGGTCTCTTGTATAAGCACATCTCGCATGCCATTCATCAAGAGACATGATCGTACTTTCAGGCTTACAGATCCTGCCTCTGAGCACTGTCCTCCTGGAGAGTTTGTTAGAGAAATCCCTCTCTCCACCCGCATTCCTGAAGATGCTAACATAGAAGCTTATTATGACGGGCCAGGATCAGTGCTTGAGATTATGGTTCCAAAACTCCGCGTTGGCCCAGAAGAACATGAAGTTCGTGTATGCCTTCGCCCTCACCTTGGGGGCAACGATCTTATGTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

515

Amino Acids

58.2

Weight (kDa)

6.17

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 95 - 261 3.7e-103 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 380 - 488 8.9e-58 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37570
fragaria_vesca FvH4_6g14050 FvH4_6g14050
malus_domestica MD04G1125700.v1.1
prunus_persica Prupe.6G252600_v2.0.a1 Prupe.6G252600_v2.0.a1 Prupe.6G252600_v2.0.a1
pyrus_communis pycom04g11300
rosa_chinensis RchiOBHm_Chr3g0466931
rosa_laevigata RLG00000024544
rosa_multiflora Rmu_sc0001193.1_g000013
rosa_roxburghii Rroxscaffold_6G00414050
rosa_rugosa Rorug03G0084200
rosa_samantha Rh3AG132200 Rh3BG153300 Rh3CG153300 Rh3DG154300
rosa_wichuraiana Rw3G012490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 752
Acc36I ACCTGC 2 cut(s) 226, 752
AccB1I GGYRCC 2 cut(s) 314, 670
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 1470
AciI CCGC 8 cut(s) 176, 233, 295, 544, 610, 638, 1390, 1468
AclI AACGTT 1 cut(s) 1125
AclWI GGATC 7 cut(s) 259, 588, 742, 880, 1215, 1325, 1444
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 3 cut(s) 313, 1196, 1419
AfaI GTAC 2 cut(s) 467, 1315
AfiI CCNNNNNNNGG 9 cut(s) 31, 189, 275, 276, 549, 550, 919, 1066, 1517
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 6 cut(s) 54, 343, 355, 481, 633, 758
AjnI CCWGG 4 cut(s) 317, 776, 1354, 1432
AluBI AGCT 9 cut(s) 255, 427, 517, 661, 721, 774, 808, 1145, 1418
AluI AGCT 9 cut(s) 255, 427, 517, 661, 721, 774, 808, 1145, 1418
Alw21I GWGCWC 1 cut(s) 1347
Alw26I GTCTC 3 cut(s) 239, 1270, 1297
AlwI GGATC 7 cut(s) 259, 588, 742, 880, 1215, 1325, 1444
AlwNI CAGNNNCTG 1 cut(s) 1334
AoxI GGCC 7 cut(s) 162, 488, 625, 815, 1133, 1430, 1474
ApeKI GCWGC 4 cut(s) 171, 514, 607, 1145
ApoI RAATTY 1 cut(s) 193
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AspLEI GCGC 2 cut(s) 171, 705
AspS9I GGNCC 7 cut(s) 230, 625, 964, 1057, 1133, 1430, 1475
AsuC2I CCSGG 3 cut(s) 383, 668, 1061
AsuHPI GGTGA 3 cut(s) 38, 776, 1505
AvaII GGWCC 3 cut(s) 230, 964, 1057
BaeGI GKGCMC 1 cut(s) 673
BanI GGYRCC 2 cut(s) 314, 670
Bbv12I GWGCWC 1 cut(s) 1347
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 4 cut(s) 183, 526, 619, 1132
BccI CCATC 3 cut(s) 193, 709, 907
BciT130I CCWGG 4 cut(s) 319, 778, 1356, 1434
BclI TGATCA 1 cut(s) 1182
BcnI CCSGG 3 cut(s) 383, 668, 1061
BcoDI GTCTC 3 cut(s) 239, 1270, 1297
BfuAI ACCTGC 2 cut(s) 226, 752
BisI GCNGC 4 cut(s) 172, 515, 608, 1146
BlsI GCNGC 4 cut(s) 173, 516, 609, 1147
Bme1390I CCNGG 7 cut(s) 319, 383, 668, 778, 1061, 1356, 1434
Bme18I GGWCC 3 cut(s) 230, 964, 1057
BmgT120I GGNCC 7 cut(s) 230, 625, 964, 1057, 1133, 1430, 1475
BmiI GGNNCC 7 cut(s) 201, 316, 626, 672, 1058, 1059, 1458
BmrFI CCNGG 7 cut(s) 319, 383, 668, 778, 1061, 1356, 1434
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 3 cut(s) 501, 594, 1393
BmuI ACTGGG 1 cut(s) 1020
BplI GAGNNNNNCTC 2 cut(s) 1225, 1257
BpmI CTGGAG 3 cut(s) 799, 830, 1377
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 407, 1466
BpuMI CCSGG 3 cut(s) 383, 668, 1061
BsaBI GATNNNNATC 1 cut(s) 1187
BsaI GGTCTC 1 cut(s) 1270
BsaJI CCNNGG 3 cut(s) 270, 547, 1516
BsaXI ACNNNNNCTCC 8 cut(s) 271, 301, 449, 479, 485, 515, 1350, 1380
Bsc4I CCNNNNNNNGG 9 cut(s) 31, 189, 275, 276, 549, 550, 919, 1066, 1517
Bse1I ACTGG 3 cut(s) 75, 730, 1015
Bse3DI GCAATG 1 cut(s) 913
Bse8I GATNNNNATC 1 cut(s) 1187
BseBI CCWGG 4 cut(s) 319, 778, 1356, 1434
BseDI CCNNGG 3 cut(s) 270, 547, 1516
BseGI GGATG 4 cut(s) 223, 609, 720, 1171
BseJI GATNNNNATC 1 cut(s) 1187
BseLI CCNNNNNNNGG 9 cut(s) 31, 189, 275, 276, 549, 550, 919, 1066, 1517
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 2 cut(s) 509, 1332
BseNI ACTGG 3 cut(s) 75, 730, 1015
BseRI GAGGAG 3 cut(s) 73, 535, 1003
BseSI GKGCMC 1 cut(s) 673
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 4 cut(s) 183, 526, 619, 1132
Bsh1236I CGCG 1 cut(s) 1470
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 7 cut(s) 164, 490, 627, 817, 1135, 1432, 1476
BshNI GGYRCC 2 cut(s) 314, 670
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 1347
BsiSI CCGG 4 cut(s) 382, 491, 667, 1061
BslFI GGGAC 3 cut(s) 398, 746, 1043
BslI CCNNNNNNNGG 9 cut(s) 31, 189, 275, 276, 549, 550, 919, 1066, 1517
BsmAI GTCTC 3 cut(s) 239, 1270, 1297
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 3 cut(s) 398, 746, 1043
BsmI GAATGC 3 cut(s) 502, 538, 1392
BsnI GGCC 7 cut(s) 164, 490, 627, 817, 1135, 1432, 1476
Bso31I GGTCTC 1 cut(s) 1270
Bsp1286I GDGCHC 2 cut(s) 673, 1347
Bsp1407I TGTACA 1 cut(s) 465
BspACI CCGC 8 cut(s) 176, 233, 295, 544, 610, 638, 1390, 1468
BspANI GGCC 7 cut(s) 164, 490, 627, 817, 1135, 1432, 1476
BspCNI CTCAG 2 cut(s) 510, 1333
BspFNI CGCG 1 cut(s) 1470
BspLI GGNNCC 7 cut(s) 201, 316, 626, 672, 1058, 1059, 1458
BspMI ACCTGC 2 cut(s) 226, 752
BspPI GGATC 7 cut(s) 259, 588, 742, 880, 1215, 1325, 1444
BspT107I GGYRCC 2 cut(s) 314, 670
BspTNI GGTCTC 1 cut(s) 1270
BsrDI GCAATG 1 cut(s) 913
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 3 cut(s) 75, 730, 1015
BssECI CCNNGG 3 cut(s) 270, 547, 1516
BssT1I CCWWGG 3 cut(s) 270, 547, 1516
Bst2UI CCWGG 4 cut(s) 319, 778, 1356, 1434
Bst4CI ACNGT 3 cut(s) 389, 838, 1349
BstAPI GCANNNNNTGC 1 cut(s) 646
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 5 cut(s) 176, 257, 261, 348, 1289
BstDEI CTNAG 2 cut(s) 518, 1341
BstF5I GGATG 4 cut(s) 223, 609, 720, 1171
BstFNI CGCG 1 cut(s) 1470
BstHHI GCGC 2 cut(s) 171, 705
BstMAI GTCTC 3 cut(s) 239, 1270, 1297
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 175, 232, 613, 646, 814, 1284
BstNI CCWGG 4 cut(s) 319, 778, 1356, 1434
BstNSI RCATGY 2 cut(s) 472, 1291
BstSCI CCNGG 7 cut(s) 317, 381, 666, 776, 1059, 1354, 1432
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 1 cut(s) 1470
BstV1I GCAGC 4 cut(s) 183, 526, 619, 1132
BstX2I RGATCY 3 cut(s) 872, 1207, 1330
BstYI RGATCY 3 cut(s) 872, 1207, 1330
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 7 cut(s) 164, 490, 627, 817, 1135, 1432, 1476
BtsCI GGATG 4 cut(s) 223, 609, 720, 1171
BtsI GCAGTG 3 cut(s) 18, 647, 1097
BtsIMutI CAGTG 7 cut(s) 18, 82, 647, 1097, 1114, 1345, 1446
BveI ACCTGC 2 cut(s) 226, 752
Cac8I GCNNGC 5 cut(s) 176, 257, 261, 348, 1289
CaiI CAGNNNCTG 1 cut(s) 1334
CfoI GCGC 2 cut(s) 171, 705
Cfr13I GGNCC 7 cut(s) 230, 625, 964, 1057, 1133, 1430, 1475
Csp6I GTAC 2 cut(s) 466, 1314
CviQI GTAC 2 cut(s) 466, 1314
DdeI CTNAG 2 cut(s) 518, 1341
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 3 cut(s) 270, 547, 1516
Eco31I GGTCTC 1 cut(s) 1270
Eco47I GGWCC 3 cut(s) 230, 964, 1057
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 3 cut(s) 313, 1196, 1419
EcoO109I RGGNCCY 2 cut(s) 625, 1057
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 4 cut(s) 317, 776, 1354, 1432
EcoT14I CCWWGG 3 cut(s) 270, 547, 1516
ErhI CCWWGG 3 cut(s) 270, 547, 1516
Esp3I CGTCTC 1 cut(s) 239
FaqI GGGAC 3 cut(s) 398, 746, 1043
FauI CCCGC 3 cut(s) 183, 551, 1397
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 1182
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 4 cut(s) 172, 515, 608, 1146
FokI GGATG 4 cut(s) 230, 616, 727, 1178
Fsp4HI GCNGC 4 cut(s) 172, 515, 608, 1146
GlaI GCGC 2 cut(s) 170, 704
GluI GCNGC 4 cut(s) 172, 515, 608, 1146
GsuI CTGGAG 3 cut(s) 799, 830, 1377
HaeIII GGCC 7 cut(s) 164, 490, 627, 817, 1135, 1432, 1476
HapII CCGG 4 cut(s) 382, 491, 667, 1061
HhaI GCGC 2 cut(s) 171, 705
Hin6I GCGC 2 cut(s) 169, 703
HinP1I GCGC 2 cut(s) 169, 703
HincII GTYRAC 3 cut(s) 577, 1075, 1539
HindII GTYRAC 3 cut(s) 577, 1075, 1539
HindIII AAGCTT 2 cut(s) 425, 1416
HinfI GANTC 4 cut(s) 8, 71, 112, 1085
HpaII CCGG 4 cut(s) 382, 491, 667, 1061
HphI GGTGA 3 cut(s) 38, 776, 1505
Hpy166II GTNNAC 6 cut(s) 137, 241, 577, 891, 1075, 1539
Hpy188I TCNGA 4 cut(s) 199, 828, 1215, 1342
Hpy188III TCNNGA 8 cut(s) 89, 215, 689, 745, 876, 1049, 1300, 1397
Hpy8I GTNNAC 6 cut(s) 137, 241, 577, 891, 1075, 1539
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 6 cut(s) 60, 361, 723, 797, 988, 1514
HpyCH4III ACNGT 3 cut(s) 389, 838, 1349
HpyCH4IV ACGT 1 cut(s) 1125
HpyCH4V TGCA 5 cut(s) 350, 514, 607, 649, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 232, 613, 646, 814, 1284
HpyF3I CTNAG 2 cut(s) 518, 1341
HpySE526I ACGT 1 cut(s) 1125
HspAI GCGC 2 cut(s) 169, 703
KflI GGGWCCC 1 cut(s) 1057
Ksp22I TGATCA 1 cut(s) 1182
LmnI GCTCC 3 cut(s) 553, 718, 779
Lsp1109I GCAGC 4 cut(s) 183, 526, 619, 1132
LweI GCATC 3 cut(s) 501, 594, 1393
MaeII ACGT 1 cut(s) 1125
MaeIII GTNAC 2 cut(s) 524, 1138
MboII GAAGA 7 cut(s) 319, 385, 520, 1132, 1202, 1412, 1493
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 3 cut(s) 872, 1207, 1330
MhlI GDGCHC 2 cut(s) 673, 1347
MluCI AATT 4 cut(s) 95, 193, 860, 1080
MlyI GAGTC 1 cut(s) 1094
MseI TTAA 2 cut(s) 881, 1041
MspA1I CMGCKG 3 cut(s) 517, 610, 1145
MspI CCGG 4 cut(s) 382, 491, 667, 1061
MspR9I CCNGG 7 cut(s) 319, 383, 668, 778, 1061, 1356, 1434
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 3 cut(s) 502, 538, 1392
MvaI CCWGG 4 cut(s) 319, 778, 1356, 1434
MvnI CGCG 1 cut(s) 1470
MwoI GCNNNNNNNGC 6 cut(s) 175, 232, 613, 646, 814, 1284
NciI CCSGG 3 cut(s) 383, 668, 1061
NdeI CATATG 1 cut(s) 308
NlaIV GGNNCC 7 cut(s) 201, 316, 626, 672, 1058, 1059, 1458
NmeAIII GCCGAG 1 cut(s) 190
NspI RCATGY 2 cut(s) 472, 1291
PaeI GCATGC 1 cut(s) 1291
PaqCI CACCTGC 1 cut(s) 752
PciI ACATGT 1 cut(s) 468
PctI GAATGC 3 cut(s) 502, 538, 1392
PfeI GAWTC 3 cut(s) 8, 71, 112
PfoI TCCNGGA 4 cut(s) 381, 776, 1059, 1354
PkrI GCNGC 4 cut(s) 173, 516, 609, 1147
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
PpuMI RGGWCCY 1 cut(s) 1057
PscI ACATGT 1 cut(s) 468
Psp1406I AACGTT 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 1057
Psp6I CCWGG 4 cut(s) 317, 776, 1354, 1432
PspGI CCWGG 4 cut(s) 317, 776, 1354, 1432
PspN4I GGNNCC 7 cut(s) 201, 316, 626, 672, 1058, 1059, 1458
PspPI GGNCC 7 cut(s) 230, 625, 964, 1057, 1133, 1430, 1475
PspPPI RGGWCCY 1 cut(s) 1057
PstNI CAGNNNCTG 1 cut(s) 1334
PsuI RGATCY 3 cut(s) 872, 1207, 1330
PvuII CAGCTG 2 cut(s) 517, 1145
RsaI GTAC 2 cut(s) 467, 1315
RsaNI GTAC 2 cut(s) 466, 1314
SaqAI TTAA 2 cut(s) 881, 1041
SatI GCNGC 4 cut(s) 172, 515, 608, 1146
Sau96I GGNCC 7 cut(s) 230, 625, 964, 1057, 1133, 1430, 1475
SchI GAGTC 1 cut(s) 1094
ScrFI CCNGG 7 cut(s) 319, 383, 668, 778, 1061, 1356, 1434
SduI GDGCHC 2 cut(s) 673, 1347
SfaNI GCATC 3 cut(s) 501, 594, 1393
SinI GGWCC 3 cut(s) 230, 964, 1057
SmlI CTYRAG 2 cut(s) 422, 1445
SmoI CTYRAG 2 cut(s) 422, 1445
SphI GCATGC 1 cut(s) 1291
Sse9I AATT 4 cut(s) 95, 193, 860, 1080
SsiI CCGC 8 cut(s) 176, 233, 295, 544, 610, 638, 1390, 1468
StyD4I CCNGG 7 cut(s) 317, 381, 666, 776, 1059, 1354, 1432
StyI CCWWGG 3 cut(s) 270, 547, 1516
TaaI ACNGT 3 cut(s) 389, 838, 1349
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 2 cut(s) 365, 592
TasI AATT 4 cut(s) 95, 193, 860, 1080
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 3 cut(s) 8, 71, 112
Tru1I TTAA 2 cut(s) 881, 1041
Tru9I TTAA 2 cut(s) 881, 1041
TscAI CASTG 7 cut(s) 25, 82, 647, 1097, 1114, 1352, 1446
TseI GCWGC 4 cut(s) 171, 514, 607, 1145
TspDTI ATGAA 6 cut(s) 125, 545, 752, 1133, 1285, 1503
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 7 cut(s) 25, 82, 647, 1097, 1114, 1352, 1446
VpaK11BI GGWCC 3 cut(s) 230, 964, 1057
XapI RAATTY 1 cut(s) 193
XceI RCATGY 2 cut(s) 472, 1291
XmiI GTMKAC 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.