Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006626

Physical Location & Seq

Genomic Coordinates Reverse (-)

6519899 .. 6524722

Gene Structure 4824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGGCGGGGAAGAAAATCATAACAATTTGTCAGTCGGGGGGTGAATTCTTTACTGAGAAGGATGGTACATTGTCATATAGAGGCGGTGACGCTCATGCTATTGACATTGATGAACAGGTGAAGTTTAATGAGTTCAAAATGGAGGTGACAGAGATGTTTGGTTGTAACATCAATAACATGTCCATCAAGTACTTCCTCCCTGGCAACAAGAAGACCCTGATTACTGTTTCGAATGACAAGGATCTGAAGCGCATGATCAAATTCCATGATGATTTTGCAACAGTCGATATTTATGTCATGGAAGAAACAATTGCACCCGATGTCTCGAACATGCCTGCCAGTAGGTCAAGCAGAACAACTTTGTCAGAAACTGTGCTTCCAGTTGATGTTCCTCTGGATGTTTCAGAGTTTGTCGGTGATACCCCCCAGCCAGATCTGCCACTAGATGCCTCTCTTGATGTTCTAGATGATACCAGCCCTATCGATACACATATTGATCTACCCACTGAGATGTCACCCCTTTTCCCTTTTATTGGCCCCAATGACGACAAACATGCTAAGGGTGCACAGCAGTGGCAGAATTCCATTACGGGTGTGGGTCAAAGATTCAGTAGTGTTCATGAATTTCGTGAATCATTGCGTAAATATGCCATTGCACATCAGTTTGCCTTTAGGTATAAGAAGAATGATAGCCATCGTGTGACTGTTAAGTGCAAGGCTGACGGCTGCCCTTGGAGAATTCATGCATCAAGGTTGTCTACGACTCAGTTAATATGTATCAAGAAGATGAATCCAACACATACATGTGAAGGGGCTGTTGCAACAACGGGGCATCAGGCAACAAGGAGTTGGGTGGCTAGTATTATTAAGGAGAAGTTAAAATACTTGCCTAATTATAAGCCCAAGGATATCGTCAATGACATCAAGCAAGAATATGGAATCCAGCTGAACTACTTTCAAGCCTGGCGTGGGAAAGAAATAGCAAAGGAGCAGCTTCAGGGTTCATACAAAGACGCATATAATCAGTTACCCCTTTTCTGTGAGAAGATAATGGAGACAAACCCAGGTAGTTTTGCTATATTTACTACTAAGGAAGACTCCAGTTTCCATCGTCTCTTTGTCTCATTCCATGCCTCATTATCTGGTTTCCAGCAAGGTTGCAGGCCTCTCCTTTTTCTTGATAGCATTCCTTTAAAGTCAAAATATCAAGGCACATTGTTGGCTGCGACTGCTGCAGATGGGGATGATGAGGTTTTCCCTGTTGCTTTCACTGTTGTGGATGCAGAAAGTGATGATAACTGGCATTGGTTTTTACTTCAGCTGAAATCCTCATTTTCAACAACTTGTCCGATAACATTTGTGGCAGACAGACAGAAGGGGCTAAGGGAATCAATTGCTGATGTATTCAAAGACTCATACCATGGCTATTGCCTGCGATACTTGACTGAGCAACTTATCAGAGACTTGAGGGGGCAGTTTTCTCACGAGGTGAAGCGACTCATGGTTGAGGATTTCTATGCTGCTGCGTATGCACCTACTCCAGATAACTTCCAAAGGTGTCTTGAGAGCATTAAAAGTATTTCATTGGAAGCTTACAATTGGATCATACAAAGTGAGCCATACAACTGGGCGAATGCATATTTTAAGGGTGCCAGATATAACCATATGACATCAAACTTTGGAGAGCTGTTTTACAGTTGGGCATCAGATGCACACGAGTTACCAATAACTCAGATGGTTGATGTGATCAGGGGTAAGATTATGGACTTGATCTACAAAAGAAGAGCAGATTCCGATCAATGGTTGACAAGGCTAACTCCATCCATGGAGGAAAAGCTAGATAAGGAAACCCTTAAAGTTCAAAACCTCCAAGTACTACTATCAGCTGGTAGCACATTTGAGGTTCGTGGTGAATCCATTGAAGTTGTCGATTTAGATTGCTGGAACTGCAGTTGTAAAGGGTGGCAGATAACTGGTTTACCATGCTGTCATGCAATTGCTGTCATTGGTTGTACGGGTCGGAACCCATATGATTATTGTTCAAGATTCTTTACTACTGACAGCTACAGATTGACATACTCAGAGTCAATACATCCTATTCCACAAGTAGACATTCCTGTGACAAAGACTACTTCTCAGGTAGCAGTAACTGTAAGCCCTCCTCCAACCCGCCGTCCACCTGGCCGGCCAACGACAAAAAAGTATGGATCTCAAGGAATGAATAAGCGTCAACTCCAGTGTAGCAGATGCAAGGGTCTTGGGCACAACAAATCCACTTGCAAAGAGATATTAATAGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

767

Amino Acids

87.0

Weight (kDa)

6.49

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	24 - 92	1.3e-09	PB1 domain
DBD_Tnp_Mut	PF03108	196 - 260	8.5e-31	MuDR family transposase
MULE	PF10551	391 - 482	8.2e-13	MULE transposase domain
SWIM	PF04434	642 - 671	1.7e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03500 AT3G03500 AT3G03500 AT5G17570 AT5G17570
fragaria_vesca	FvH4_6g13930 FvH4_6g14060
malus_domestica	MD15G1141100.v1.1
prunus_persica	Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1
pyrus_communis	pycom15g12750
rosa_chinensis	RchiOBHm_Chr3g0466941
rosa_laevigata	RLG00000024540 RLG00000024543
rosa_multiflora	Rmu_sc0001193.1_g000012
rosa_roxburghii	Rroxscaffold_6G00414040
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132300 Rh3BG153400 Rh3CG153400 Rh3DG154400
rosa_wichuraiana	Rw3G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AccB1I	GGYRCC	1 cut(s)	1649
AccI	GTMKAC	2 cut(s)	758, 2109
AciI	CCGC	3 cut(s)	5, 84, 2170
AclWI	GGATC	3 cut(s)	249, 1610, 2215
AcoI	YGGCCR	2 cut(s)	2182, 2186
AcsI	RAATTY	5 cut(s)	44, 260, 580, 623, 738
AcuI	CTGAAG	3 cut(s)	266, 980, 1301
AdeI	CACNNNGTG	1 cut(s)	1489
AfaI	GTAC	4 cut(s)	67, 191, 1875, 2014
AfiI	CCNNNNNNNGG	3 cut(s)	533, 969, 1800
AflIII	ACRYGT	2 cut(s)	177, 803
AgsI	TTSAA	7 cut(s)	136, 959, 1338, 1408, 1862, 1922, 2043
AjnI	CCWGG	4 cut(s)	199, 962, 1063, 2179
AleI	CACNNNNGTG	2 cut(s)	571, 1274
AluBI	AGCT	8 cut(s)	946, 994, 1321, 1592, 1687, 1837, 1886, 2064
AluI	AGCT	8 cut(s)	946, 994, 1321, 1592, 1687, 1837, 1886, 2064
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	5 cut(s)	328, 1049, 1118, 1126, 1455
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	3 cut(s)	249, 1610, 2215
AlwNI	CAGNNNCTG	2 cut(s)	371, 2150
AoxI	GGCC	4 cut(s)	535, 1163, 2182, 2186
ApaLI	GTGCAC	1 cut(s)	564
ApeKI	GCWGC	6 cut(s)	726, 991, 1223, 1232, 1520, 1523
ApoI	RAATTY	5 cut(s)	44, 260, 580, 623, 738
AseI	ATTAAT	1 cut(s)	2291
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	8 cut(s)	53, 98, 130, 157, 428, 507, 1501, 1922
AsuII	TTCGAA	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	568, 2265
BanI	GGYRCC	1 cut(s)	1649
BarI	GAAGNNNNNNTAC	2 cut(s)	866, 898
BauI	CACGAG	2 cut(s)	1484, 1715
BbsI	GAAGAC	2 cut(s)	218, 1101
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	6 cut(s)	713, 1003, 1210, 1219, 1507, 1510
BccI	CCATC	7 cut(s)	56, 191, 702, 1116, 1232, 1729, 1828
BceAI	ACGGC	2 cut(s)	739, 2157
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	4 cut(s)	201, 964, 1065, 2181
BclI	TGATCA	2 cut(s)	255, 1746
BcoDI	GTCTC	5 cut(s)	328, 1049, 1118, 1126, 1455
BfaI	CTAG	4 cut(s)	443, 464, 858, 1838
BfmI	CTRYAG	3 cut(s)	1233, 1948, 2065
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	6 cut(s)	727, 992, 1224, 1233, 1521, 1524
BlsI	GCNGC	6 cut(s)	728, 993, 1225, 1234, 1522, 1525
BmcAI	AGTACT	2 cut(s)	191, 1875
Bme1390I	CCNGG	4 cut(s)	201, 964, 1065, 2181
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	3 cut(s)	538, 1651, 2024
BmrFI	CCNGG	4 cut(s)	201, 964, 1065, 2181
BmrI	ACTGGG	1 cut(s)	1636
BmsI	GCATC	7 cut(s)	436, 755, 841, 1270, 1699, 1712, 2237
BmuI	ACTGGG	1 cut(s)	1636
BpiI	GAAGAC	2 cut(s)	218, 1101
BpmI	CTGGAG	3 cut(s)	1084, 1524, 2219
Bpu10I	CCTNAGC	2 cut(s)	558, 1382
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	3 cut(s)	1486, 1583, 2196
Bsa29I	ATCGAT	1 cut(s)	483
BsaBI	GATNNNNATC	2 cut(s)	693, 1794
BsaJI	CCNNGG	6 cut(s)	199, 731, 903, 1063, 1420, 1824
Bsc4I	CCNNNNNNNGG	3 cut(s)	533, 969, 1800
Bse118I	RCCGGY	1 cut(s)	2184
Bse1I	ACTGG	7 cut(s)	339, 380, 1101, 1304, 1631, 1978, 2236
Bse3DI	GCAATG	2 cut(s)	635, 651
Bse8I	GATNNNNATC	2 cut(s)	693, 1794
BseBI	CCWGG	4 cut(s)	201, 964, 1065, 2181
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	6 cut(s)	199, 731, 903, 1063, 1420, 1824
BseGI	GGATG	6 cut(s)	67, 403, 1249, 1285, 1820, 2092
BseJI	GATNNNNATC	2 cut(s)	693, 1794
BseLI	CCNNNNNNNGG	3 cut(s)	533, 969, 1800
BseMI	GCAATG	2 cut(s)	635, 651
BseMII	CTCAG	7 cut(s)	45, 498, 779, 1437, 1745, 2094, 2150
BseNI	ACTGG	7 cut(s)	339, 380, 1101, 1304, 1631, 1978, 2236
BseRI	GAGGAG	1 cut(s)	2151
BseSI	GKGCMC	2 cut(s)	568, 2265
BseXI	GCAGC	6 cut(s)	713, 1003, 1210, 1219, 1507, 1510
BseYI	CCCAGC	1 cut(s)	426
BshFI	GGCC	4 cut(s)	537, 1165, 2184, 2188
BshNI	GGYRCC	1 cut(s)	1649
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	2185
BslI	CCNNNNNNNGG	3 cut(s)	533, 969, 1800
BsmAI	GTCTC	5 cut(s)	328, 1049, 1118, 1126, 1455
BsmBI	CGTCTC	1 cut(s)	1118
BsmI	GAATGC	2 cut(s)	1185, 1639
BsnI	GGCC	4 cut(s)	537, 1165, 2184, 2188
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	568, 2265
Bsp143I	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
Bsp19I	CCATGG	2 cut(s)	1420, 1824
BspACI	CCGC	3 cut(s)	5, 84, 2170
BspANI	GGCC	4 cut(s)	537, 1165, 2184, 2188
BspCNI	CTCAG	7 cut(s)	46, 499, 778, 1438, 1744, 2093, 2149
BspDI	ATCGAT	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	538, 1651, 2024
BspMAI	CTGCAG	2 cut(s)	1237, 1952
BspPI	GGATC	3 cut(s)	249, 1610, 2215
BspQI	GCTCTTC	1 cut(s)	1777
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	1649
BsrDI	GCAATG	2 cut(s)	635, 651
BsrFI	RCCGGY	1 cut(s)	2184
BsrI	ACTGG	7 cut(s)	339, 380, 1101, 1304, 1631, 1978, 2236
BssAI	RCCGGY	1 cut(s)	2184
BssECI	CCNNGG	6 cut(s)	199, 731, 903, 1063, 1420, 1824
BssMI	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
BssSI	CACGAG	2 cut(s)	1484, 1715
BssT1I	CCWWGG	4 cut(s)	731, 903, 1420, 1824
Bst2BI	CACGAG	2 cut(s)	1484, 1715
Bst2UI	CCWGG	4 cut(s)	201, 964, 1065, 2181
Bst4CI	ACNGT	7 cut(s)	226, 283, 373, 706, 1273, 1697, 2152
Bst6I	CTCTTC	1 cut(s)	1777
BstAPI	GCANNNNNTGC	1 cut(s)	1709
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	336, 1163, 1433, 2186
BstDSI	CCRYGG	2 cut(s)	1420, 1824
BstF5I	GGATG	6 cut(s)	67, 403, 1249, 1285, 1820, 2092
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	9 cut(s)	244, 258, 436, 499, 1605, 1749, 1773, 1798, 2210
BstMAI	GTCTC	5 cut(s)	328, 1049, 1118, 1126, 1455
BstMBI	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
BstMWI	GCNNNNNNNGC	7 cut(s)	436, 563, 1229, 1232, 1529, 1709, 1947
BstNI	CCWGG	4 cut(s)	201, 964, 1065, 2181
BstNSI	RCATGY	4 cut(s)	181, 334, 557, 807
BstSCI	CCNGG	4 cut(s)	199, 962, 1063, 2179
BstSFI	CTRYAG	3 cut(s)	1233, 1948, 2065
BstSLI	GKGCMC	2 cut(s)	568, 2265
BstV1I	GCAGC	6 cut(s)	713, 1003, 1210, 1219, 1507, 1510
BstV2I	GAAGAC	2 cut(s)	218, 1101
BstX2I	RGATCY	3 cut(s)	241, 433, 2207
BstXI	CCANNNNNNTGG	1 cut(s)	1626
BstYI	RGATCY	3 cut(s)	241, 433, 2207
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	4 cut(s)	537, 1165, 2184, 2188
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	1420, 1824
BtsCI	GGATG	6 cut(s)	67, 403, 1249, 1285, 1820, 2092
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	4 cut(s)	504, 578, 1269, 2243
Cac8I	GCNNGC	4 cut(s)	336, 1163, 1433, 2186
CaiI	CAGNNNCTG	2 cut(s)	371, 2150
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	2184
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	3 cut(s)	98, 1022, 2216
Csp6I	GTAC	4 cut(s)	66, 190, 1874, 2013
CviQI	GTAC	4 cut(s)	66, 190, 1874, 2013
DpnI	GATC	9 cut(s)	243, 257, 435, 498, 1604, 1748, 1772, 1797, 2209
DpnII	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
DraI	TTTAAA	1 cut(s)	1194
DraIII	CACNNNGTG	1 cut(s)	1489
EaeI	YGGCCR	2 cut(s)	2182, 2186
Eam1104I	CTCTTC	1 cut(s)	1777
EarI	CTCTTC	1 cut(s)	1777
Eco130I	CCWWGG	4 cut(s)	731, 903, 1420, 1824
Eco147I	AGGCCT	1 cut(s)	1165
Eco32I	GATATC	1 cut(s)	910
Eco57I	CTGAAG	3 cut(s)	266, 980, 1301
EcoRI	GAATTC	3 cut(s)	44, 580, 738
EcoRII	CCWGG	4 cut(s)	199, 962, 1063, 2179
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	4 cut(s)	731, 903, 1420, 1824
EcoT22I	ATGCAT	2 cut(s)	748, 1639
ErhI	CCWWGG	4 cut(s)	731, 903, 1420, 1824
Esp3I	CGTCTC	1 cut(s)	1118
FauI	CCCGC	1 cut(s)	2177
FauNDI	CATATG	2 cut(s)	1665, 2029
FbaI	TGATCA	2 cut(s)	255, 1746
FblI	GTMKAC	2 cut(s)	758, 2109
Fnu4HI	GCNGC	6 cut(s)	727, 992, 1224, 1233, 1521, 1524
FokI	GGATG	6 cut(s)	74, 410, 1256, 1292, 1807, 2079
FseI	GGCCGGCC	1 cut(s)	2188
Fsp4HI	GCNGC	6 cut(s)	727, 992, 1224, 1233, 1521, 1524
FspBI	CTAG	4 cut(s)	443, 464, 858, 1838
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	6 cut(s)	727, 992, 1224, 1233, 1521, 1524
GsaI	CCCAGC	1 cut(s)	430
GsuI	CTGGAG	3 cut(s)	1084, 1524, 2219
HaeIII	GGCC	4 cut(s)	537, 1165, 2184, 2188
HapII	CCGG	1 cut(s)	2185
HgaI	GACGC	3 cut(s)	98, 1022, 2216
HhaI	GCGC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	1806, 2231
HindII	GTYRAC	2 cut(s)	1806, 2231
HindIII	AAGCTT	1 cut(s)	1590
HpaII	CCGG	1 cut(s)	2185
HphI	GGTGA	8 cut(s)	53, 98, 130, 157, 428, 507, 1501, 1922
Hpy166II	GTNNAC	7 cut(s)	566, 759, 1806, 1979, 2110, 2177, 2231
Hpy8I	GTNNAC	7 cut(s)	566, 759, 1806, 1979, 2110, 2177, 2231
HpyAV	CCTTC	3 cut(s)	52, 803, 1369
HpyCH4III	ACNGT	7 cut(s)	226, 283, 373, 706, 1273, 1697, 2152
HpyF10VI	GCNNNNNNNGC	7 cut(s)	436, 563, 1229, 1232, 1529, 1709, 1947
HspAI	GCGC	1 cut(s)	250
KroI	GCCGGC	1 cut(s)	2184
KroNI	GCCGGC	1 cut(s)	2186
Ksp22I	TGATCA	2 cut(s)	255, 1746
Kzo9I	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
LguI	GCTCTTC	1 cut(s)	1777
LmnI	GCTCC	1 cut(s)	988
Lsp1109I	GCAGC	6 cut(s)	713, 1003, 1210, 1219, 1507, 1510
LweI	GCATC	7 cut(s)	436, 755, 841, 1270, 1699, 1712, 2237
MaeI	CTAG	4 cut(s)	443, 464, 858, 1838
MaeIII	GTNAC	9 cut(s)	86, 145, 164, 513, 700, 1026, 1719, 2119, 2146
MalI	GATC	9 cut(s)	243, 257, 435, 498, 1604, 1748, 1772, 1797, 2209
MboI	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
MboII	GAAGA	8 cut(s)	22, 223, 314, 694, 796, 1057, 1106, 1794
MfeI	CAATTG	4 cut(s)	309, 1392, 1597, 1995
MflI	RGATCY	3 cut(s)	241, 433, 2207
MhlI	GDGCHC	2 cut(s)	568, 2265
MlyI	GAGTC	5 cut(s)	757, 1091, 1406, 1491, 2093
MmeI	TCCRAC	3 cut(s)	818, 2000, 2189
Mph1103I	ATGCAT	2 cut(s)	748, 1639
MroNI	GCCGGC	1 cut(s)	2184
MslI	CAYNNNNRTG	6 cut(s)	509, 571, 802, 804, 1274, 2117
MspA1I	CMGCKG	3 cut(s)	946, 1321, 1886
MspI	CCGG	1 cut(s)	2185
MspR9I	CCNGG	4 cut(s)	201, 964, 1065, 2181
MunI	CAATTG	4 cut(s)	309, 1392, 1597, 1995
Mva1269I	GAATGC	2 cut(s)	1185, 1639
MvaI	CCWGG	4 cut(s)	201, 964, 1065, 2181
MwoI	GCNNNNNNNGC	7 cut(s)	436, 563, 1229, 1232, 1529, 1709, 1947
NaeI	GCCGGC	1 cut(s)	2186
NcoI	CCATGG	2 cut(s)	1420, 1824
NdeI	CATATG	2 cut(s)	1665, 2029
NdeII	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
NgoMIV	GCCGGC	1 cut(s)	2184
NlaIV	GGNNCC	3 cut(s)	538, 1651, 2024
NmuCI	GTSAC	5 cut(s)	86, 145, 513, 700, 2119
NsiI	ATGCAT	2 cut(s)	748, 1639
NspI	RCATGY	4 cut(s)	181, 334, 557, 807
NspV	TTCGAA	1 cut(s)	230
OliI	CACNNNNGTG	2 cut(s)	571, 1274
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	1165
PciI	ACATGT	2 cut(s)	177, 803
PciSI	GCTCTTC	1 cut(s)	1777
PctI	GAATGC	2 cut(s)	1185, 1639
PdiI	GCCGGC	1 cut(s)	2186
PfeI	GAWTC	8 cut(s)	606, 632, 790, 939, 1388, 1790, 1913, 2046
PkrI	GCNGC	6 cut(s)	728, 993, 1225, 1234, 1522, 1525
PleI	GAGTC	5 cut(s)	757, 1091, 1406, 1491, 2092
PpsI	GAGTC	5 cut(s)	757, 1091, 1406, 1491, 2092
PscI	ACATGT	2 cut(s)	177, 803
PshBI	ATTAAT	1 cut(s)	2291
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	4 cut(s)	199, 962, 1063, 2179
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	4 cut(s)	199, 962, 1063, 2179
PspN4I	GGNNCC	3 cut(s)	538, 1651, 2024
PspPI	GGNCC	1 cut(s)	536
PstI	CTGCAG	2 cut(s)	1237, 1952
PstNI	CAGNNNCTG	2 cut(s)	371, 2150
PsuI	RGATCY	3 cut(s)	241, 433, 2207
PvuII	CAGCTG	3 cut(s)	946, 1321, 1886
RigI	GGCCGGCC	1 cut(s)	2188
RsaI	GTAC	4 cut(s)	67, 191, 1875, 2014
RsaNI	GTAC	4 cut(s)	66, 190, 1874, 2013
RseI	CAYNNNNRTG	6 cut(s)	509, 571, 802, 804, 1274, 2117
SapI	GCTCTTC	1 cut(s)	1777
SatI	GCNGC	6 cut(s)	727, 992, 1224, 1233, 1521, 1524
Sau3AI	GATC	9 cut(s)	241, 255, 433, 496, 1602, 1746, 1770, 1795, 2207
Sau96I	GGNCC	1 cut(s)	536
ScaI	AGTACT	2 cut(s)	191, 1875
SchI	GAGTC	5 cut(s)	757, 1091, 1406, 1491, 2093
ScrFI	CCNGG	4 cut(s)	201, 964, 1065, 2181
SduI	GDGCHC	2 cut(s)	568, 2265
SfaNI	GCATC	7 cut(s)	436, 755, 841, 1270, 1699, 1712, 2237
SfcI	CTRYAG	3 cut(s)	1233, 1948, 2065
SfuI	TTCGAA	1 cut(s)	230
SmiMI	CAYNNNNRTG	6 cut(s)	509, 571, 802, 804, 1274, 2117
SmlI	CTYRAG	3 cut(s)	1465, 1562, 2211
SmoI	CTYRAG	3 cut(s)	1465, 1562, 2211
SseBI	AGGCCT	1 cut(s)	1165
SsiI	CCGC	3 cut(s)	5, 84, 2170
SspMI	CTAG	4 cut(s)	443, 464, 858, 1838
StuI	AGGCCT	1 cut(s)	1165
StyD4I	CCNGG	4 cut(s)	199, 962, 1063, 2179
StyI	CCWWGG	4 cut(s)	731, 903, 1420, 1824
TaaI	ACNGT	7 cut(s)	226, 283, 373, 706, 1273, 1697, 2152
TaqI	TCGA	5 cut(s)	230, 285, 326, 483, 1929
TatI	WGTACW	2 cut(s)	189, 1873
TfiI	GAWTC	8 cut(s)	606, 632, 790, 939, 1388, 1790, 1913, 2046
TscAI	CASTG	4 cut(s)	511, 578, 1276, 2243
TseFI	GTSAC	5 cut(s)	86, 145, 513, 700, 2119
TseI	GCWGC	6 cut(s)	726, 991, 1223, 1232, 1520, 1523
Tsp45I	GTSAC	5 cut(s)	86, 145, 513, 700, 2119
TspDTI	ATGAA	8 cut(s)	126, 608, 636, 731, 803, 993, 1572, 2234
TspRI	CASTG	4 cut(s)	511, 578, 1276, 2243
VneI	GTGCAC	1 cut(s)	564
VspI	ATTAAT	1 cut(s)	2291
XapI	RAATTY	5 cut(s)	44, 260, 580, 623, 738
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	4 cut(s)	181, 334, 557, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmiI	GTMKAC	2 cut(s)	758, 2109
XspI	CTAG	4 cut(s)	443, 464, 858, 1838
ZrmI	AGTACT	2 cut(s)	191, 1875
Zsp2I	ATGCAT	2 cut(s)	748, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.