Rw3G012500

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006626
Physical Location & Seq
Reverse (-)
12259741 .. 12260934
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012500.1

Sequence Viewer

Length: 804 bp
ATGAAGTTGTTTGATGCCCACTGTCACCTTCAAGACCCAAGAATCTTCCACAAGGCACCCCAATTGATCGCTTCAGCCATCGATTCCGGCGTCGTTCGCTTCGCCGTTAATGGGGTCTCGGAGCAAGACTGGCCTTTGGTGAAGCAGATGGGCGAGACCCATAAACCTCACGTAGTTCCCTGCTTCGGTCTCCACCCCTGGTATGTTGCGGACAGAACCCCCAATTGGCTCAAAACCCTGAGAGAAAGCTTTGACTCCACACCCTCTGCCGCAGTCGGAGAGATTGGATTGGACAAAGGGAAGAAGATGGGTGATTTCGCCGATCAGGTTCATGTGTTTAAACAACAACTGGAACTCGCCAAGGAGTTGAAGAGGCCGGTTTCAATCCACTGTGTTCGAGCTTTCGGCGACCTTCTTGAGATTATGAAATCTCTGGGTCCGTTTCCCGAGGGGTTTTTACTTCATTCATTTCTTGGCTCTGCTGAGATGGTTCCTGAATTCGCCAATTTGGGTGGTTACTTTTCGTTTTCGGGGTTTCTAATGTCCATGAAAGCAAGCAAGGCGAAGAGGATGCTCAAGGCAGTGCCGTTTGATAGGATTCTACTGGAGACGGATGCGCCTGATGCATTGCCAAAGTCTGAAGAATCGGAGCCTCTGCAGCCGGTTGAAGGTGGTGATGCTTCGCTGAACCATCCGGCAAATATTCACAACGTGCTGGTTTATGTTGCATCTTTGTTGGAGATGGACAAGGAAGAAGTTGCCGAAGCAAGTTATCATAACGCTGTGCGTTTGTTCTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

267

Amino Acids

29.69

Weight (kDa)

5.94

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 4 - 266 1.2e-64 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 2 cut(s) 209, 270
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 2 cut(s) 57, 660
AcyI GRCGYC 1 cut(s) 90
AdeI CACNNNGTG 1 cut(s) 712
AfiI CCNNNNNNNGG 4 cut(s) 111, 185, 225, 668
AgsI TTSAA 4 cut(s) 32, 370, 384, 668
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 249, 401
AluI AGCT 2 cut(s) 249, 401
Alw26I GTCTC 4 cut(s) 121, 149, 194, 602
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 2 cut(s) 131, 374
ApeKI GCWGC 1 cut(s) 658
ApoI RAATTY 1 cut(s) 497
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 4 cut(s) 17, 151, 323, 686
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 437
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 670
BccI CCATC 6 cut(s) 86, 142, 301, 481, 699, 736
BceAI ACGGC 2 cut(s) 89, 571
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 4 cut(s) 121, 149, 194, 602
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 2 cut(s) 270, 659
BlsI GCNGC 2 cut(s) 271, 660
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 4 cut(s) 57, 438, 492, 651
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 6 cut(s) 4, 561, 604, 613, 667, 737
BpmI CTGGAG 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 437, 560
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 3 cut(s) 121, 149, 194
BsaJI CCNNGG 3 cut(s) 197, 360, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 185, 225, 668
Bse118I RCCGGY 2 cut(s) 376, 661
Bse1I ACTGG 3 cut(s) 134, 354, 609
Bse3DI GCAATG 1 cut(s) 626
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 197, 360, 447
BseGI GGATG 3 cut(s) 576, 619, 691
BseLI CCNNNNNNNGG 4 cut(s) 111, 185, 225, 668
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 2 cut(s) 230, 474
BseNI ACTGG 3 cut(s) 134, 354, 609
BseXI GCAGC 1 cut(s) 670
BshFI GGCC 2 cut(s) 133, 376
BshNI GGYRCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 4 cut(s) 87, 377, 662, 695
BslI CCNNNNNNNGG 4 cut(s) 111, 185, 225, 668
BsmAI GTCTC 4 cut(s) 121, 149, 194, 602
BsmBI CGTCTC 1 cut(s) 602
BsnI GGCC 2 cut(s) 133, 376
Bso31I GGTCTC 3 cut(s) 121, 149, 194
BsoBI CYCGRG 1 cut(s) 446
Bsp143I GATC 2 cut(s) 66, 322
BspACI CCGC 2 cut(s) 209, 270
BspANI GGCC 2 cut(s) 133, 376
BspCNI CTCAG 2 cut(s) 231, 475
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 4 cut(s) 57, 438, 492, 651
BspMAI CTGCAG 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 3 cut(s) 121, 149, 194
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 376, 661
BsrI ACTGG 3 cut(s) 134, 354, 609
BssAI RCCGGY 2 cut(s) 376, 661
BssECI CCNNGG 3 cut(s) 197, 360, 447
BssMI GATC 2 cut(s) 66, 322
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 23, 392
Bst6I CTCTTC 2 cut(s) 365, 560
BstACI GRCGYC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 2 cut(s) 239, 483
BstF5I GGATG 3 cut(s) 576, 619, 691
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 2 cut(s) 69, 325
BstMAI GTCTC 4 cut(s) 121, 149, 194, 602
BstMBI GATC 2 cut(s) 66, 322
BstMWI GCNNNNNNNGC 5 cut(s) 96, 130, 560, 623, 658
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 656
BstV1I GCAGC 1 cut(s) 670
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 2 cut(s) 133, 376
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 3 cut(s) 576, 619, 691
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 19, 388, 588
Cac8I GCNNGC 1 cut(s) 556
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 2 cut(s) 376, 661
Cfr13I GGNCC 1 cut(s) 437
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 2 cut(s) 332, 547
CviJI RGCY 9 cut(s) 77, 133, 229, 249, 376, 401, 477, 652, 661
CviKI_1 RGCY 9 cut(s) 77, 133, 229, 249, 376, 401, 477, 652, 661
DdeI CTNAG 2 cut(s) 239, 483
DpnI GATC 2 cut(s) 68, 324
DpnII GATC 2 cut(s) 66, 322
DraI TTTAAA 1 cut(s) 340
DraIII CACNNNGTG 1 cut(s) 712
Eam1104I CTCTTC 2 cut(s) 365, 560
EarI CTCTTC 2 cut(s) 365, 560
Eco130I CCWWGG 1 cut(s) 360
Eco31I GGTCTC 3 cut(s) 121, 149, 194
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 57, 660
Eco88I CYCGRG 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 360
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 2 cut(s) 335, 550
FaiI YATR 7 cut(s) 162, 204, 333, 425, 548, 723, 777
FatI CATG 2 cut(s) 331, 546
Fnu4HI GCNGC 2 cut(s) 270, 659
FokI GGATG 3 cut(s) 583, 626, 678
Fsp4HI GCNGC 2 cut(s) 270, 659
GlaI GCGC 1 cut(s) 618
GluI GCNGC 2 cut(s) 270, 659
GsuI CTGGAG 1 cut(s) 626
HaeIII GGCC 2 cut(s) 133, 376
HapII CCGG 4 cut(s) 87, 377, 662, 695
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 619
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 335, 550
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 5 cut(s) 42, 83, 254, 598, 644
HpaII CCGG 4 cut(s) 87, 377, 662, 695
HphI GGTGA 4 cut(s) 17, 151, 323, 686
Hpy188I TCNGA 4 cut(s) 121, 278, 640, 649
Hpy188III TCNNGA 4 cut(s) 32, 416, 446, 494
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 38, 422, 662
HpyCH4III ACNGT 2 cut(s) 23, 392
HpyCH4IV ACGT 2 cut(s) 171, 711
HpyCH4V TGCA 3 cut(s) 626, 658, 728
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 130, 560, 623, 658
HpyF3I CTNAG 2 cut(s) 239, 483
HpySE526I ACGT 2 cut(s) 171, 711
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 335, 550
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 66, 322
LmnI GCTCC 2 cut(s) 121, 649
Lsp1109I GCAGC 1 cut(s) 670
LweI GCATC 6 cut(s) 4, 561, 604, 613, 667, 737
MaeII ACGT 2 cut(s) 171, 711
MaeIII GTNAC 2 cut(s) 23, 515
MalI GATC 2 cut(s) 68, 324
MboI GATC 2 cut(s) 66, 322
MboII GAAGA 7 cut(s) 37, 313, 316, 382, 577, 653, 764
MfeI CAATTG 2 cut(s) 62, 223
MluCI AATT 4 cut(s) 62, 223, 497, 505
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 256, 717
MnlI CCTC 6 cut(s) 177, 274, 366, 442, 561, 663
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 2 cut(s) 108, 339
MspI CCGG 4 cut(s) 87, 377, 662, 695
MspR9I CCNGG 1 cut(s) 199
MssI GTTTAAAC 1 cut(s) 340
MunI CAATTG 2 cut(s) 62, 223
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 5 cut(s) 96, 130, 560, 623, 658
NdeII GATC 2 cut(s) 66, 322
NlaIII CATG 2 cut(s) 335, 550
NlaIV GGNNCC 4 cut(s) 57, 438, 492, 651
NmuCI GTSAC 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 4 cut(s) 42, 83, 598, 644
PkrI GCNGC 2 cut(s) 271, 660
PleI GAGTC 1 cut(s) 248
PmeI GTTTAAAC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 4 cut(s) 57, 438, 492, 651
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 660
SaqAI TTAA 2 cut(s) 108, 339
SatI GCNGC 2 cut(s) 270, 659
Sau3AI GATC 2 cut(s) 66, 322
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 199
SetI ASST 9 cut(s) 30, 169, 174, 251, 330, 403, 414, 673, 714
SfaNI GCATC 6 cut(s) 4, 561, 604, 613, 667, 737
SfcI CTRYAG 1 cut(s) 656
SinI GGWCC 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 416, 575
SmoI CTYRAG 2 cut(s) 416, 575
Sse9I AATT 4 cut(s) 62, 223, 497, 505
SsiI CCGC 2 cut(s) 209, 270
SspI AATATT 1 cut(s) 703
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 23, 392
TaiI ACGT 2 cut(s) 174, 714
TaqI TCGA 2 cut(s) 81, 397
TaqII GACCGA 1 cut(s) 176
TasI AATT 4 cut(s) 62, 223, 497, 505
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 4 cut(s) 42, 83, 598, 644
Tru1I TTAA 2 cut(s) 108, 339
Tru9I TTAA 2 cut(s) 108, 339
TscAI CASTG 3 cut(s) 26, 395, 588
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 6 cut(s) 17, 320, 440, 452, 456, 563
TspGWI ACGGA 2 cut(s) 429, 626
TspRI CASTG 3 cut(s) 26, 395, 588
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 497
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.