Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006626

Physical Location & Seq

Genomic Coordinates Forward (+)

8737402 .. 8740000

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12750.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATGAAATTATTTGACGCGCACTGTCACCTGCAAGACCCAAGAATCTTTGACAAGGCGCCCCAATTGATTGCAGCAACCCTCGATTCTGGCGTCGTTCGTTTTGCCGTCAATGGAGTCTCTGAGAAAGATTGGCACTTGGTCAAGCAGCTTGGGGAGTCCTATCCTTGCGTAATTCCATGCTTCGGTCTCCATCCCTGGTTTGTTGCAGAGAGGACACCAAATTGGCTTAACACTTTAAAACAATTCTTCGAGTCTACGCCCTCTGCAGCAGTTGGAGAGATAGGCTTGGACAAGGGTTCGCATGGGAAGAAGGTCGATTTCGCGGATCAGGTTAATGTATTCAGGCAACAACTTGAACTTGCAAAAGAGTTAAAAAGGCCAGCATCCATCCATTGTGTCCATGCTTTTGGTGACCTTCTTCAGATAATGAAGTACATAGATGCTGCCGTTTTCTCTATTATGTTAATCGTAGCTTGGCCTTTTCCTGCTGGCGTGATTCTTCATTCTTTCCTGGGTTCTGCTGAAATGGTTCCTGAATTTGCCAGTCTTGGTGCTTACTTTTCGTTCTCTGGATTTCTCATGTCCATGAAAGTAAACAAGGCAAAGAGGATGCTGAAGATGGTACCTTCTGAAAGAATATTACTGGAGACAGATGCACCTGATGCATTACCAAAGTCTGAGTTAGGTTCTCTGCATCTGGTTGAAGGAGATGCTTCCTTCCCTAAAGAGCTTCAGTCGCAAGAAATTTCCTCAGCTCCAGTGGCTAGTGCAAGCGATGCTGTAACACTTCCAAAAGTAGTACTAAATCACCCAGCAAATATTCACAATGTACTCATCTATGTCGCATCTTTGCTAGAGATGACCACAGAAGAACTTGCTGAAATAAGTTACCATAATGCAGTGCGCTTATTCTCTTACGATGTAGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TatD_DNase

Protein Analysis

312

Amino Acids

34.31

Weight (kDa)

5.83

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03500 AT3G03500 AT3G03500 AT5G17570 AT5G17570
fragaria_vesca	FvH4_6g13930 FvH4_6g14060
malus_domestica	MD15G1141100.v1.1
prunus_persica	Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1 Prupe.7G272000_v2.0.a1
pyrus_communis	pycom15g12750
rosa_chinensis	RchiOBHm_Chr3g0466941
rosa_laevigata	RLG00000024540 RLG00000024543
rosa_multiflora	Rmu_sc0001193.1_g000012
rosa_roxburghii	Rroxscaffold_6G00414040
rosa_rugosa	Rorug03G0084200
rosa_samantha	Rh3AG132300 Rh3BG153400 Rh3CG153400 Rh3DG154400
rosa_wichuraiana	Rw3G012500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	39
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	2 cut(s)	58, 625
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	2 cut(s)	20, 326
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	539, 747
AcuI	CTGAAG	3 cut(s)	407, 638, 719
AcyI	GRCGYC	2 cut(s)	59, 93
AfaI	GTAC	4 cut(s)	437, 627, 804, 834
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	359, 707
AjnI	CCWGG	2 cut(s)	197, 513
AluBI	AGCT	5 cut(s)	151, 476, 733, 758, 933
AluI	AGCT	5 cut(s)	151, 476, 733, 758, 933
Alw26I	GTCTC	3 cut(s)	124, 194, 644
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	380, 479
ApeKI	GCWGC	4 cut(s)	74, 148, 269, 446
ApoI	RAATTY	2 cut(s)	539, 747
Asp700I	GAANNNNTTC	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	625
AspLEI	GCGC	3 cut(s)	22, 61, 909
AsuHPI	GGTGA	3 cut(s)	20, 425, 803
BanI	GGYRCC	2 cut(s)	58, 625
BbvCI	CCTCAGC	1 cut(s)	754
BbvI	GCAGC	4 cut(s)	86, 160, 281, 433
BccI	CCATC	3 cut(s)	201, 398, 616
BceAI	ACGGC	2 cut(s)	92, 434
BciT130I	CCWGG	2 cut(s)	199, 515
BcoDI	GTCTC	3 cut(s)	124, 194, 644
BfaI	CTAG	2 cut(s)	768, 857
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	4 cut(s)	75, 149, 270, 447
BlsI	GCNGC	4 cut(s)	76, 150, 271, 448
BmcAI	AGTACT	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	199, 515
BmiI	GGNNCC	3 cut(s)	60, 534, 627
BmrFI	CCNGG	2 cut(s)	199, 515
BmsI	GCATC	9 cut(s)	395, 433, 603, 646, 655, 703, 706, 769, 857
BpmI	CTGGAG	2 cut(s)	668, 744
Bpu10I	CCTNAGC	1 cut(s)	754
BsaHI	GRCGYC	2 cut(s)	59, 93
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	197, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	3 cut(s)	546, 651, 761
BseBI	CCWGG	2 cut(s)	199, 515
BseDI	CCNNGG	2 cut(s)	197, 514
BseGI	GGATG	4 cut(s)	193, 386, 390, 618
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	114, 672, 768
BseNI	ACTGG	3 cut(s)	546, 651, 761
BseXI	GCAGC	4 cut(s)	86, 160, 281, 433
BseYI	CCCAGC	1 cut(s)	814
Bsh1236I	CGCG	2 cut(s)	20, 326
BshFI	GGCC	2 cut(s)	382, 481
BshNI	GGYRCC	2 cut(s)	58, 625
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	124, 194, 644
BsnI	GGCC	2 cut(s)	382, 481
Bso31I	GGTCTC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	2 cut(s)	382, 481
BspCNI	CTCAG	3 cut(s)	115, 673, 767
BspFNI	CGCG	2 cut(s)	20, 326
BspLI	GGNNCC	3 cut(s)	60, 534, 627
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	58, 625
BspTNI	GGTCTC	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	546, 651, 761
BssECI	CCNNGG	2 cut(s)	197, 514
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	2 cut(s)	59, 93
Bst2UI	CCWGG	2 cut(s)	199, 515
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	2 cut(s)	59, 93
BstAPI	GCANNNNNTGC	2 cut(s)	665, 779
BstC8I	GCNNGC	3 cut(s)	384, 493, 775
BstDEI	CTNAG	3 cut(s)	123, 681, 754
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	4 cut(s)	193, 386, 390, 618
BstFNI	CGCG	2 cut(s)	20, 326
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	22, 61, 909
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	3 cut(s)	124, 194, 644
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	4 cut(s)	665, 739, 764, 779
BstNI	CCWGG	2 cut(s)	199, 515
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	197, 513
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	20, 326
BstV1I	GCAGC	4 cut(s)	86, 160, 281, 433
BstXI	CCANNNNNNTGG	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	382, 481
BtgZI	GCGATG	1 cut(s)	792
BtsCI	GGATG	4 cut(s)	193, 386, 390, 618
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	3 cut(s)	22, 768, 909
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	384, 493, 775
CfoI	GCGC	3 cut(s)	22, 61, 909
CseI	GACGC	2 cut(s)	26, 82
Csp6I	GTAC	4 cut(s)	436, 626, 803, 833
CviAII	CATG	5 cut(s)	180, 305, 404, 583, 589
CviQI	GTAC	4 cut(s)	436, 626, 803, 833
DdeI	CTNAG	3 cut(s)	123, 681, 754
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DraI	TTTAAA	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	407, 638, 719
Eco91I	GGTNACC	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	197, 513
EcoT22I	ATGCAT	1 cut(s)	670
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
FaeI	CATG	5 cut(s)	183, 308, 407, 586, 592
FaiI	YATR	9 cut(s)	181, 306, 405, 440, 464, 584, 590, 843, 897
FatI	CATG	5 cut(s)	179, 304, 403, 582, 588
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	75, 149, 270, 447
FokI	GGATG	4 cut(s)	180, 373, 377, 625
Fsp4HI	GCNGC	4 cut(s)	75, 149, 270, 447
FspBI	CTAG	2 cut(s)	768, 857
GlaI	GCGC	3 cut(s)	21, 60, 908
GluI	GCNGC	4 cut(s)	75, 149, 270, 447
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	2 cut(s)	668, 744
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	382, 481
HgaI	GACGC	2 cut(s)	26, 82
HhaI	GCGC	3 cut(s)	22, 61, 909
Hin1I	GRCGYC	2 cut(s)	59, 93
Hin1II	CATG	5 cut(s)	183, 308, 407, 586, 592
Hin6I	GCGC	3 cut(s)	20, 59, 907
HinP1I	GCGC	3 cut(s)	20, 59, 907
HinfI	GANTC	6 cut(s)	45, 86, 117, 158, 254, 499
HphI	GGTGA	3 cut(s)	20, 425, 803
Hpy166II	GTNNAC	2 cut(s)	258, 598
Hpy188I	TCNGA	4 cut(s)	124, 426, 634, 682
Hpy188III	TCNNGA	2 cut(s)	536, 573
Hpy8I	GTNNAC	2 cut(s)	258, 598
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	307, 428, 639, 701, 730
HpyCH4III	ACNGT	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	4 cut(s)	665, 739, 764, 779
HpyF3I	CTNAG	3 cut(s)	123, 681, 754
Hsp92I	GRCGYC	2 cut(s)	59, 93
Hsp92II	CATG	5 cut(s)	183, 308, 407, 586, 592
HspAI	GCGC	3 cut(s)	20, 59, 907
KasI	GGCGCC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	629
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	4 cut(s)	86, 160, 281, 433
LweI	GCATC	9 cut(s)	395, 433, 603, 646, 655, 703, 706, 769, 857
MaeI	CTAG	2 cut(s)	768, 857
MaeIII	GTNAC	4 cut(s)	26, 413, 784, 890
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	241, 322, 413, 494, 631, 884
MfeI	CAATTG	1 cut(s)	65
MluCI	AATT	7 cut(s)	8, 65, 174, 223, 245, 539, 747
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	126, 167, 263
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	5 cut(s)	92, 207, 274, 603, 763
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	5 cut(s)	231, 239, 336, 374, 467
MslI	CAYNNNNRTG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	199, 515
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	199, 515
MvnI	CGCG	2 cut(s)	20, 326
MwoI	GCNNNNNNNGC	4 cut(s)	665, 739, 764, 779
NarI	GGCGCC	1 cut(s)	59
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	5 cut(s)	183, 308, 407, 586, 592
NlaIV	GGNNCC	3 cut(s)	60, 534, 627
NmuCI	GTSAC	2 cut(s)	26, 413
NsiI	ATGCAT	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	45, 86, 499
PkrI	GCNGC	4 cut(s)	76, 150, 271, 448
PleI	GAGTC	3 cut(s)	125, 166, 262
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	3 cut(s)	125, 166, 262
Psp6I	CCWGG	2 cut(s)	197, 513
PspEI	GGTNACC	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	2 cut(s)	197, 513
PspN4I	GGNNCC	3 cut(s)	60, 534, 627
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	4 cut(s)	437, 627, 804, 834
RsaNI	GTAC	4 cut(s)	436, 626, 803, 833
RseI	CAYNNNNRTG	1 cut(s)	587
SaqAI	TTAA	5 cut(s)	231, 239, 336, 374, 467
SatI	GCNGC	4 cut(s)	75, 149, 270, 447
Sau3AI	GATC	1 cut(s)	328
ScaI	AGTACT	1 cut(s)	804
SchI	GAGTC	3 cut(s)	126, 167, 263
ScrFI	CCNGG	2 cut(s)	199, 515
SfaNI	GCATC	9 cut(s)	395, 433, 603, 646, 655, 703, 706, 769, 857
SfcI	CTRYAG	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	587
Sse9I	AATT	7 cut(s)	8, 65, 174, 223, 245, 539, 747
SsiI	CCGC	1 cut(s)	326
SspDI	GGCGCC	1 cut(s)	58
SspI	AATATT	2 cut(s)	642, 823
SspMI	CTAG	2 cut(s)	768, 857
StyD4I	CCNGG	2 cut(s)	197, 513
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	84, 252, 318
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	7 cut(s)	8, 65, 174, 223, 245, 539, 747
TatI	WGTACW	3 cut(s)	435, 802, 832
TfiI	GAWTC	3 cut(s)	45, 86, 499
Tru1I	TTAA	5 cut(s)	231, 239, 336, 374, 467
Tru9I	TTAA	5 cut(s)	231, 239, 336, 374, 467
TscAI	CASTG	3 cut(s)	29, 768, 909
TseFI	GTSAC	2 cut(s)	26, 413
TseI	GCWGC	4 cut(s)	74, 148, 269, 446
Tsp45I	GTSAC	2 cut(s)	26, 413
TspDTI	ATGAA	4 cut(s)	20, 446, 494, 605
TspRI	CASTG	3 cut(s)	29, 768, 909
XapI	RAATTY	2 cut(s)	539, 747
XmiI	GTMKAC	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	2 cut(s)	768, 857
ZrmI	AGTACT	1 cut(s)	804
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.