Prupe.7G272000_v2.0.a1

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006626
Physical Location & Seq
Forward (+)
22312122 .. 22323753
11632 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G272000.4

Sequence Viewer

Length: 906 bp
ATGAAATTGTTTGACGCACACTGTCACTTGCAAGACCCAAGAATCTTTGACAAGGCACCCCAATTGATTGCAGCGGCCGTTGATTCTGGCGTTGTTCGTTTTGCTGTTAATGGAGTCTCTGAGAAAGATTGGCATTTGGTCAAGCAGATTAGTGAGTCCTATCCTTGCGTAATTCCCTGCTTCGGTCTCCATCCCTGTAGGTATGTTGTAGAGAGGACACCCAATTGGCTCAACACTTTAAAACAATTCTTCGAGGCTACTCCCTCTGCTGCAGTTGGAGAGATTGGCTTGGACAAAGGTTCACAAGGGAAGAAGGTTGATTTCACAGATCAGGTTAATGTATTCAGGCAACAACTTGAAATTGCAAAAGAGTTAAAAAGGCCAGCATCCATCCACTGTGTTCGTGCTTTTGGAGACCTTCTTCAGATAATGAAATCTTTGGGTCCTTTTCCTGCTGGCGTCATTCTTCATTCTTACCTAGGTTCTGCTGAGATGGTTCCTGAATTTGCCAATCTTGGTGCTTACTTTTCTTTCTCTGGATTTCTTATGTCCATGAAAGTACACAAGGCAAAGAGGATGCTGAAGATGGTGCCTTCTGAAAGAATTTTACTGGAGACAGATGCACCTGATGCATTACCCAAGTCTGAGTTAGATTCTGCGCATCTGGTTGAAGGAGCTTCCCTCCCTGAAGAGCTTCAGTCAATAGAAATTTCCTCAGCTCCATTTGCTGGTGCAAGAGATGTATCAACATTTCCAAAAGAAGCACTAAATCACCCAGAAAATATTCACAAGGTTCTCATCTTTGTAGCATCTTTGGTAGAGATGACCAAAGAAGAACTCGCTGAAGTAACTTACCAAAATGCAGTACGCTTATTCTCTTACGATACCTGTGGCGGGCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

302

Amino Acids

33.28

Weight (kDa)

5.94

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 660
AccB1I GGYRCC 2 cut(s) 55, 589
AccB7I CCANNNNNTGG 1 cut(s) 728
AciI CCGC 2 cut(s) 74, 894
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 3 cut(s) 503, 603, 708
AcuI CTGAAG 5 cut(s) 407, 602, 680, 708, 864
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 2 cut(s) 561, 867
AfiI CCNNNNNNNGG 3 cut(s) 182, 728, 894
AgsI TTSAA 2 cut(s) 359, 671
AluBI AGCT 3 cut(s) 677, 694, 719
AluI AGCT 3 cut(s) 677, 694, 719
Alw26I GTCTC 4 cut(s) 121, 191, 408, 608
AoxI GGCC 2 cut(s) 75, 380
ApeKI GCWGC 2 cut(s) 71, 269
ApoI RAATTY 3 cut(s) 503, 603, 708
Asp700I GAANNNNTTC 2 cut(s) 693, 783
AspA2I CCTAGG 1 cut(s) 478
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 443
AvrII CCTAGG 1 cut(s) 478
BanI GGYRCC 2 cut(s) 55, 589
BbvCI CCTCAGC 1 cut(s) 715
BbvI GCAGC 2 cut(s) 83, 256
BccI CCATC 4 cut(s) 198, 398, 487, 580
BceAI ACGGC 1 cut(s) 62
BcoDI GTCTC 4 cut(s) 121, 191, 408, 608
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 2 cut(s) 196, 270
BisI GCNGC 3 cut(s) 72, 75, 270
BlnI CCTAGG 1 cut(s) 478
BlsI GCNGC 3 cut(s) 73, 76, 271
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 4 cut(s) 57, 444, 498, 591
BmsI GCATC 6 cut(s) 395, 567, 610, 619, 670, 818
BplI GAGNNNNNCTC 2 cut(s) 666, 698
BpmI CTGGAG 1 cut(s) 632
Bpu10I CCTNAGC 1 cut(s) 715
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 2 cut(s) 191, 408
BsaJI CCNNGG 1 cut(s) 478
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 728, 894
Bse1I ACTGG 1 cut(s) 615
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 4 cut(s) 190, 386, 390, 582
BseLI CCNNNNNNNGG 3 cut(s) 182, 728, 894
BseMII CTCAG 4 cut(s) 111, 480, 636, 729
BseNI ACTGG 1 cut(s) 615
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 83, 256
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 77, 382
BshNI GGYRCC 2 cut(s) 55, 589
BsiEI CGRYCG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 182, 728, 894
BsmAI GTCTC 4 cut(s) 121, 191, 408, 608
BsnI GGCC 2 cut(s) 77, 382
Bso31I GGTCTC 2 cut(s) 191, 408
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 2 cut(s) 74, 894
BspANI GGCC 2 cut(s) 77, 382
BspCNI CTCAG 4 cut(s) 112, 481, 637, 728
BspLI GGNNCC 4 cut(s) 57, 444, 498, 591
BspMAI CTGCAG 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 684
BspT107I GGYRCC 2 cut(s) 55, 589
BspTNI GGTCTC 2 cut(s) 191, 408
BsrI ACTGG 1 cut(s) 615
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 1 cut(s) 328
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 23, 398
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 384, 457, 896
BstDEI CTNAG 4 cut(s) 120, 489, 645, 715
BstF5I GGATG 4 cut(s) 190, 386, 390, 582
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 4 cut(s) 121, 191, 408, 608
BstMBI GATC 1 cut(s) 328
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 629, 725
BstSFI CTRYAG 2 cut(s) 196, 270
BstV1I GCAGC 2 cut(s) 83, 256
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 2 cut(s) 77, 382
BtsCI GGATG 4 cut(s) 190, 386, 390, 582
BtsIMutI CAGTG 2 cut(s) 19, 394
Cac8I GCNNGC 3 cut(s) 384, 457, 896
CfoI GCGC 1 cut(s) 661
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 2 cut(s) 23, 448
Csp6I GTAC 2 cut(s) 560, 866
CviAII CATG 1 cut(s) 553
CviJI RGCY 8 cut(s) 77, 229, 257, 288, 382, 677, 694, 719
CviKI_1 RGCY 8 cut(s) 77, 229, 257, 288, 382, 677, 694, 719
CviQI GTAC 2 cut(s) 560, 866
DdeI CTNAG 4 cut(s) 120, 489, 645, 715
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 478
Eco31I GGTCTC 2 cut(s) 191, 408
Eco47I GGWCC 1 cut(s) 443
Eco52I CGGCCG 1 cut(s) 75
Eco57I CTGAAG 5 cut(s) 407, 602, 680, 708, 864
EcoO109I RGGNCCY 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 478
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 1 cut(s) 556
FaiI YATR 3 cut(s) 204, 548, 554
FatI CATG 1 cut(s) 552
FauI CCCGC 1 cut(s) 887
Fnu4HI GCNGC 3 cut(s) 72, 75, 270
FokI GGATG 4 cut(s) 177, 373, 377, 589
Fsp4HI GCNGC 3 cut(s) 72, 75, 270
FspBI CTAG 1 cut(s) 479
FspI TGCGCA 1 cut(s) 660
GlaI GCGC 1 cut(s) 660
GluI GCNGC 3 cut(s) 72, 75, 270
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 2 cut(s) 77, 382
HgaI GACGC 2 cut(s) 23, 448
HhaI GCGC 1 cut(s) 661
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 1 cut(s) 556
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HinfI GANTC 5 cut(s) 42, 83, 114, 155, 653
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 2 cut(s) 302, 562
Hpy188I TCNGA 4 cut(s) 121, 426, 598, 646
Hpy188III TCNNGA 2 cut(s) 500, 537
Hpy8I GTNNAC 2 cut(s) 302, 562
HpyAV CCTTC 4 cut(s) 307, 428, 603, 665
HpyCH4III ACNGT 2 cut(s) 23, 398
HpyCH4V TGCA 8 cut(s) 31, 71, 272, 365, 623, 632, 734, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 725
HpyF3I CTNAG 4 cut(s) 120, 489, 645, 715
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 1 cut(s) 556
HspAI GCGC 1 cut(s) 659
Kzo9I GATC 1 cut(s) 328
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 2 cut(s) 674, 724
Lsp1109I GCAGC 2 cut(s) 83, 256
LweI GCATC 6 cut(s) 395, 567, 610, 619, 670, 818
MaeI CTAG 1 cut(s) 479
MaeIII GTNAC 2 cut(s) 23, 847
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 7 cut(s) 241, 322, 413, 458, 595, 701, 845
MfeI CAATTG 2 cut(s) 62, 223
MluCI AATT 9 cut(s) 5, 62, 171, 223, 245, 360, 503, 603, 708
MlyI GAGTC 2 cut(s) 123, 164
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 6 cut(s) 207, 247, 274, 567, 692, 724
Mph1103I ATGCAT 1 cut(s) 634
MroXI GAANNNNTTC 2 cut(s) 693, 783
MseI TTAA 5 cut(s) 108, 239, 336, 374, 904
MspA1I CMGCKG 1 cut(s) 74
MunI CAATTG 2 cut(s) 62, 223
MwoI GCNNNNNNNGC 2 cut(s) 629, 725
NdeII GATC 1 cut(s) 328
NlaIII CATG 1 cut(s) 556
NlaIV GGNNCC 4 cut(s) 57, 444, 498, 591
NmuCI GTSAC 1 cut(s) 23
NsbI TGCGCA 1 cut(s) 660
NsiI ATGCAT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 684
PdmI GAANNNNTTC 2 cut(s) 693, 783
PfeI GAWTC 3 cut(s) 42, 83, 653
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 3 cut(s) 73, 76, 271
PleI GAGTC 2 cut(s) 122, 163
PpsI GAGTC 2 cut(s) 122, 163
PpuMI RGGWCCY 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 443
PspN4I GGNNCC 4 cut(s) 57, 444, 498, 591
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
PstI CTGCAG 1 cut(s) 274
RsaI GTAC 2 cut(s) 561, 867
RsaNI GTAC 2 cut(s) 560, 866
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 5 cut(s) 108, 239, 336, 374, 904
SatI GCNGC 3 cut(s) 72, 75, 270
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 2 cut(s) 123, 164
SfaNI GCATC 6 cut(s) 395, 567, 610, 619, 670, 818
SfcI CTRYAG 2 cut(s) 196, 270
SinI GGWCC 1 cut(s) 443
Sse9I AATT 9 cut(s) 5, 62, 171, 223, 245, 360, 503, 603, 708
SsiI CCGC 2 cut(s) 74, 894
SspI AATATT 1 cut(s) 784
SspMI CTAG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 2 cut(s) 23, 398
TaqI TCGA 1 cut(s) 252
TaqII GACCGA 1 cut(s) 173
TasI AATT 9 cut(s) 5, 62, 171, 223, 245, 360, 503, 603, 708
TatI WGTACW 1 cut(s) 559
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 42, 83, 653
Tru1I TTAA 5 cut(s) 108, 239, 336, 374, 904
Tru9I TTAA 5 cut(s) 108, 239, 336, 374, 904
TscAI CASTG 2 cut(s) 26, 401
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 2 cut(s) 71, 269
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 4 cut(s) 17, 446, 458, 569
TspRI CASTG 2 cut(s) 26, 401
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 3 cut(s) 503, 603, 708
XmaJI CCTAGG 1 cut(s) 478
XmnI GAANNNNTTC 2 cut(s) 693, 783
XspI CTAG 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.