RLG00000024540

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006626
Physical Location & Seq
Forward (+)
36840152 .. 36841840
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024540

Sequence Viewer

Length: 726 bp
ATGGGCGAGACTCATAAACCTCACATAGTTCCCTGCTTCGGTCTCCACCCCTGGTATGTTGCAGACAGAACCCCCAATTGGCTCAAAACCCTGAGAGAAAGCTTTGGCTCCACACCCTCTGCCGCAGTAGGAGAGATTGGATTGGACAAAGGGAAGAAGATGGGTGATTTCGCCGATCAGGTTCATGTGTTTAAACAACTGGAACTCGCCAAGGAGTTAAAGAGGCCGGTTTCAATCCATTGTGTTCTAGCTTTCGGCGACCTTCTTGAGATTATGAAATCTTTGGGGCCGTTTCCTGAGCGGTTTTTACTTCATTCTCTTCTTGGCTCTATTGAGATGGTTCCTGAATTCGCCAATTTGGGTGGTTACTTTTCATTTTCAGGGTTTCTAATGTCCATGAAAGCAAGCAAGGCCAAGAGGATGCTGAAGGATGTGCCGTTTGATAGGATTCTACTGGAGACCGATGCGCTTGATGCAATGCCAAAGTATGAAGAAATGGAGTCTTGGAAGCTGGTTGAAGGTGATGCTTCGCTGAACCATCTGGCAAATATTCACAATGTGCTTGTGTATGTTGCTTATTTGTTGGAGATGGACAAGGAAGAAGTTGTCGAAGCAAGTTATCAAAATGCTGTTGTGGAGCCCATAGTTCCAGTTATTTTTCAACACACAAAGGCAACTAGTTCCATACAGAGAATAAGGCTAGGAGACCTTGCAAATATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

242

Amino Acids

27.04

Weight (kDa)

5.85

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 4 - 210 1.4e-42 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 301
AciI CCGC 2 cut(s) 123, 301
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 446
AdeI CACNNNGTG 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 38, 78
AgsI TTSAA 3 cut(s) 234, 518, 662
AhlI ACTAGT 1 cut(s) 677
AjnI CCWGG 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 3 cut(s) 102, 251, 511
AluI AGCT 3 cut(s) 102, 251, 511
Alw26I GTCTC 4 cut(s) 2, 47, 452, 699
AoxI GGCC 3 cut(s) 224, 287, 411
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 176, 533
BanII GRGCYC 1 cut(s) 642
BccI CCATC 4 cut(s) 154, 331, 546, 583
BceAI ACGGC 2 cut(s) 274, 421
BciT130I CCWGG 1 cut(s) 52
BcoDI GTCTC 4 cut(s) 2, 47, 452, 699
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 3 cut(s) 248, 678, 701
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 4 cut(s) 109, 288, 342, 639
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 4 cut(s) 411, 454, 463, 514
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 287
BsaI GGTCTC 3 cut(s) 47, 452, 699
BsaJI CCNNGG 2 cut(s) 50, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 78
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 204, 459, 650
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 50, 210
BseGI GGATG 2 cut(s) 426, 436
BseLI CCNNNNNNNGG 2 cut(s) 38, 78
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 83, 288
BseNI ACTGG 3 cut(s) 204, 459, 650
BshFI GGCC 3 cut(s) 226, 289, 413
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 38, 78
BsmAI GTCTC 4 cut(s) 2, 47, 452, 699
BsnI GGCC 3 cut(s) 226, 289, 413
Bso31I GGTCTC 3 cut(s) 47, 452, 699
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 2 cut(s) 123, 301
BspANI GGCC 3 cut(s) 226, 289, 413
BspCNI CTCAG 2 cut(s) 84, 289
BspLI GGNNCC 4 cut(s) 109, 288, 342, 639
BspTNI GGTCTC 3 cut(s) 47, 452, 699
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 3 cut(s) 204, 459, 650
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 50, 210
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 92, 297
BstF5I GGATG 2 cut(s) 426, 436
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 4 cut(s) 2, 47, 452, 699
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 410, 473
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BsuRI GGCC 3 cut(s) 226, 289, 413
BtsCI GGATG 2 cut(s) 426, 436
Cac8I GCNNGC 1 cut(s) 406
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 2 cut(s) 185, 397
DdeI CTNAG 2 cut(s) 92, 297
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
DraI TTTAAA 1 cut(s) 193
DraIII CACNNNGTG 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 3 cut(s) 47, 452, 699
Eco57I CTGAAG 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 188, 400
FatI CATG 2 cut(s) 184, 396
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 433, 443
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 3 cut(s) 248, 678, 701
GlaI GCGC 1 cut(s) 468
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 3 cut(s) 226, 289, 413
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 469
Hin1II CATG 2 cut(s) 188, 400
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 3 cut(s) 10, 448, 500
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 176, 533
Hpy188III TCNNGA 3 cut(s) 266, 296, 344
HpyAV CCTTC 3 cut(s) 272, 421, 512
HpyCH4V TGCA 3 cut(s) 62, 476, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 473
HpyF3I CTNAG 2 cut(s) 92, 297
Hsp92II CATG 2 cut(s) 188, 400
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 113, 637
LweI GCATC 4 cut(s) 411, 454, 463, 514
MaeI CTAG 3 cut(s) 248, 678, 701
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 301
MboI GATC 1 cut(s) 175
MboII GAAGA 5 cut(s) 166, 169, 311, 503, 611
MfeI CAATTG 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 3 cut(s) 76, 347, 355
MlyI GAGTC 2 cut(s) 4, 509
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 4 cut(s) 30, 127, 216, 411
MseI TTAA 2 cut(s) 192, 218
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 52
MssI GTTTAAAC 1 cut(s) 193
MunI CAATTG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 410, 473
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 188, 400
NlaIV GGNNCC 4 cut(s) 109, 288, 342, 639
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 4, 508
PmeI GTTTAAAC 1 cut(s) 193
PpsI GAGTC 2 cut(s) 4, 508
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 109, 288, 342, 639
PspPI GGNCC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 192, 218
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 2 cut(s) 4, 509
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 1 cut(s) 642
SetI ASST 8 cut(s) 22, 104, 183, 253, 264, 513, 523, 711
SfaNI GCATC 4 cut(s) 411, 454, 463, 514
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 677
Sse9I AATT 3 cut(s) 76, 347, 355
SsiI CCGC 2 cut(s) 123, 301
SspI AATATT 2 cut(s) 550, 718
SspMI CTAG 3 cut(s) 248, 678, 701
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 609
TaqII GACCGA 2 cut(s) 29, 476
TasI AATT 3 cut(s) 76, 347, 355
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 2 cut(s) 192, 218
Tru9I TTAA 2 cut(s) 192, 218
TspDTI ATGAA 6 cut(s) 173, 290, 302, 363, 413, 504
XapI RAATTY 1 cut(s) 347
XspI CTAG 3 cut(s) 248, 678, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.