RchiOBHm_Chr3g0466941

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006626
Physical Location & Seq
Reverse (-)
13248807 .. 13249436
630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43294

Sequence Viewer

Length: 381 bp
ATGAAATCTCTGGGCCCGTTTCCCCAGGGGTTTTTACTTCATTCATTTCTTGGCTCTGCTGAGATGGTTCCTGAATTCGCCAATTTGGGTGGTTACTTTTCGTTTTCGGGGTTTCTAATGTCCATGAAAGCAAGCAAGGCCAAGAGGATGCTCAAGGCAGTGCCGTTTGATAGGATTCTACTGGAGACGGATGCGCCTGATGCATTGCCAAAGTCTGAAGAATCGGAGCCTCTGCAGCCGGTTGAAGGTGATGATGCTTCGCTGAACCATCCGGCAAATATTCACAACGTGCTGGTTTATGTTGCATCTTTGTTGGAGATAGACAAGGAAGAAGTCGCCGAAGCAAGTTATCATAACGCTGTGCGTTTGTTCTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

126

Amino Acids

13.88

Weight (kDa)

4.95

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 10 - 125 5.2e-25 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 245
AjnI CCWGG 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 2 cut(s) 13, 138
ApaI GGGCCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 13, 14
AsuHPI GGTGA 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 58, 276
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 13, 14
BmiI GGNNCC 3 cut(s) 15, 69, 228
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 5 cut(s) 138, 181, 190, 244, 314
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 24, 25
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 24, 25
BseGI GGATG 3 cut(s) 153, 196, 268
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 15, 140
BsiSI CCGG 2 cut(s) 239, 272
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 15, 140
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 17
BspANI GGCC 2 cut(s) 15, 140
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 3 cut(s) 15, 69, 228
BspMAI CTGCAG 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 24, 25
Bst2UI CCWGG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 153, 196, 268
BstHHI GCGC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 179
BstMWI GCNNNNNNNGC 3 cut(s) 137, 200, 235
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 247
BsuRI GGCC 2 cut(s) 15, 140
BtsCI GGATG 3 cut(s) 153, 196, 268
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 13, 14
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 15, 54, 140, 229, 238
CviKI_1 RGCY 5 cut(s) 15, 54, 140, 229, 238
DdeI CTNAG 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 127
FaiI YATR 3 cut(s) 125, 300, 354
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 3 cut(s) 160, 203, 255
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 236
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 15, 140
HapII CCGG 2 cut(s) 239, 272
HhaI GCGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 2 cut(s) 175, 221
HpaII CCGG 2 cut(s) 239, 272
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 217, 226
Hpy188III TCNNGA 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 203, 235, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 200, 235
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 11, 38, 84, 167, 210, 252, 278, 285
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 5 cut(s) 138, 181, 190, 244, 314
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 2 cut(s) 230, 341
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 74, 82
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 2 cut(s) 138, 240
Mph1103I ATGCAT 1 cut(s) 205
MspI CCGG 2 cut(s) 239, 272
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 137, 200, 235
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 3 cut(s) 15, 69, 228
NsiI ATGCAT 1 cut(s) 205
PasI CCCWGGG 1 cut(s) 25
PfeI GAWTC 2 cut(s) 175, 221
PkrI GCNGC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 15, 69, 228
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 13, 14
PstI CTGCAG 1 cut(s) 237
SatI GCNGC 1 cut(s) 236
Sau96I GGNCC 2 cut(s) 13, 14
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 17
SetI ASST 2 cut(s) 250, 291
SfaNI GCATC 5 cut(s) 138, 181, 190, 244, 314
SfcI CTRYAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 74, 82
SspI AATATT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 24
TaiI ACGT 1 cut(s) 291
TasI AATT 2 cut(s) 74, 82
TfiI GAWTC 2 cut(s) 175, 221
TscAI CASTG 1 cut(s) 165
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 17, 29, 33, 140
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 165
XapI RAATTY 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.