FvH4_6g14060

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006626
Physical Location & Seq
Reverse (-)
8620099 .. 8620905
807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14060.t1

Sequence Viewer

Length: 807 bp
ATGAAGTTGTTTGACGCTCACTGTCATCTTCAAGACCCAAGAATCTTCCACAAGGCACCCCAATTGATTGCTTCCGCCATCGATTCCGGCGTGGTTCGCTTCGCCGTTAACGGGGTCTCCGAGCTAGACTGGCCTTTGGTGAAGCAGATGGGCGAGTCTCATCATCCTCACATAGTCCCCTGCTTCGGTCTCCACCCTTGGTACGTTGCAGACAGAACACCCAATTGGCTCAACACCCTCAAACAAAGCTTTGCCTCCACACCCTCTGCCGCAGTCGGCGAGATTGGATTGGACAAAGGGAAGAAGATGGGTGATTTCACCGATCAGGTTCATGTGTTCCGGCAACAACTCGAACTCGCCAAGGAGTTAAAGAGACCGGCATCGATCCACTGTGTTCTTGCTTTCGGCGATCTTCTTGAGATAATGAAATCTTTGGGGCCGTTTCCTGAGGGGTTTTTATTTCATTCTTACCTTGGTTCTGCTGAGATGGTTCCTGAGTTTGCCAATCTGGGTGGTTACTTTTCGTTTTCGGGGTTTCTTATGTCCATGAAAACAAGCAAGGCCAAGAGGATGGTGAAGGCAGTGCCATTTGATAGGATTTTACTGGAGACGGATGCGCCTGATGCATTGCCGAAGTCTCAAGAAGAATCGGAGCCGCCTCTGCAGCCGGTTGAAGGTGATGCATCGCTGAACCATCCGGCAACTATTCACAATGTGCTGGTTTATGTTGCATCTTTGTTAGAGATGGACAAGGAGGAAGTTGCTGAGGCAAGTTATCAGAATGCTGTGCGTTTGTTCTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

269

Amino Acids

29.79

Weight (kDa)

5.82

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 4 - 267 1.2e-62 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 3 cut(s) 75, 270, 656
AclWI GGATC 1 cut(s) 379
AdeI CACNNNGTG 1 cut(s) 715
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 111, 185, 674
AgsI TTSAA 2 cut(s) 32, 674
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 124, 249
AluI AGCT 2 cut(s) 124, 249
Alw26I GTCTC 6 cut(s) 121, 162, 194, 367, 602, 642
AlwI GGATC 1 cut(s) 379
AoxI GGCC 3 cut(s) 131, 437, 561
ApeKI GCWGC 1 cut(s) 664
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 5 cut(s) 151, 310, 323, 586, 689
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 765
BbvI GCAGC 1 cut(s) 676
BccI CCATC 7 cut(s) 86, 142, 301, 481, 565, 702, 739
BceAI ACGGC 2 cut(s) 89, 424
BcoDI GTCTC 6 cut(s) 121, 162, 194, 367, 602, 642
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 662
BisI GCNGC 3 cut(s) 270, 656, 665
BlsI GCNGC 3 cut(s) 271, 657, 666
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 4 cut(s) 57, 438, 492, 654
BmsI GCATC 6 cut(s) 389, 604, 613, 670, 692, 740
BpmI CTGGAG 1 cut(s) 626
Bpu10I CCTNAGC 1 cut(s) 765
BpuEI CTTGAG 2 cut(s) 437, 624
Bsa29I ATCGAT 2 cut(s) 81, 383
BsaI GGTCTC 3 cut(s) 121, 194, 367
BsaJI CCNNGG 3 cut(s) 197, 360, 472
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 185, 674
Bse118I RCCGGY 2 cut(s) 376, 667
Bse1I ACTGG 2 cut(s) 134, 609
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 626
BseCI ATCGAT 2 cut(s) 81, 383
BseDI CCNNGG 3 cut(s) 197, 360, 472
BseGI GGATG 4 cut(s) 163, 576, 619, 694
BseLI CCNNNNNNNGG 3 cut(s) 111, 185, 674
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 4 cut(s) 438, 474, 486, 756
BseNI ACTGG 2 cut(s) 134, 609
BseXI GCAGC 1 cut(s) 676
BshFI GGCC 3 cut(s) 133, 439, 563
BshNI GGYRCC 1 cut(s) 55
BshVI ATCGAT 2 cut(s) 81, 383
BsiSI CCGG 5 cut(s) 87, 340, 377, 668, 698
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 111, 185, 674
BsmAI GTCTC 6 cut(s) 121, 162, 194, 367, 602, 642
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 3 cut(s) 133, 439, 563
Bso31I GGTCTC 3 cut(s) 121, 194, 367
Bsp143I GATC 3 cut(s) 322, 384, 409
BspACI CCGC 3 cut(s) 75, 270, 656
BspANI GGCC 3 cut(s) 133, 439, 563
BspCNI CTCAG 4 cut(s) 439, 475, 487, 757
BspDI ATCGAT 2 cut(s) 81, 383
BspLI GGNNCC 4 cut(s) 57, 438, 492, 654
BspMAI CTGCAG 1 cut(s) 666
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 3 cut(s) 121, 194, 367
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 376, 667
BsrI ACTGG 2 cut(s) 134, 609
BssAI RCCGGY 2 cut(s) 376, 667
BssECI CCNNGG 3 cut(s) 197, 360, 472
BssMI GATC 3 cut(s) 322, 384, 409
BssT1I CCWWGG 3 cut(s) 197, 360, 472
Bst4CI ACNGT 2 cut(s) 23, 392
BstDEI CTNAG 4 cut(s) 447, 483, 495, 765
BstF5I GGATG 4 cut(s) 163, 576, 619, 694
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 3 cut(s) 325, 387, 412
BstMAI GTCTC 6 cut(s) 121, 162, 194, 367, 602, 642
BstMBI GATC 3 cut(s) 322, 384, 409
BstMWI GCNNNNNNNGC 5 cut(s) 96, 130, 623, 661, 664
BstSFI CTRYAG 1 cut(s) 662
BstV1I GCAGC 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 571
Bsu15I ATCGAT 2 cut(s) 81, 383
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 133, 439, 563
BsuTUI ATCGAT 2 cut(s) 81, 383
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 4 cut(s) 163, 576, 619, 694
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 19, 388, 588
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 2 cut(s) 376, 667
Cfr13I GGNCC 1 cut(s) 437
ClaI ATCGAT 2 cut(s) 81, 383
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 2 cut(s) 332, 547
CviJI RGCY 8 cut(s) 124, 133, 229, 249, 439, 563, 655, 667
CviKI_1 RGCY 8 cut(s) 124, 133, 229, 249, 439, 563, 655, 667
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 4 cut(s) 447, 483, 495, 765
DpnI GATC 3 cut(s) 324, 386, 411
DpnII GATC 3 cut(s) 322, 384, 409
DraIII CACNNNGTG 1 cut(s) 715
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 197, 360, 472
Eco31I GGTCTC 3 cut(s) 121, 194, 367
Eco81I CCTNAGG 1 cut(s) 447
EcoT14I CCWWGG 3 cut(s) 197, 360, 472
EcoT22I ATGCAT 2 cut(s) 628, 685
ErhI CCWWGG 3 cut(s) 197, 360, 472
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 2 cut(s) 335, 550
FaiI YATR 5 cut(s) 173, 333, 542, 548, 726
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 331, 546
Fnu4HI GCNGC 3 cut(s) 270, 656, 665
FokI GGATG 4 cut(s) 150, 583, 626, 681
Fsp4HI GCNGC 3 cut(s) 270, 656, 665
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 618
GluI GCNGC 3 cut(s) 270, 656, 665
GsuI CTGGAG 1 cut(s) 626
HaeIII GGCC 3 cut(s) 133, 439, 563
HapII CCGG 5 cut(s) 87, 340, 377, 668, 698
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 619
Hin1II CATG 2 cut(s) 335, 550
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 4 cut(s) 42, 83, 155, 647
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 5 cut(s) 87, 340, 377, 668, 698
HphI GGTGA 5 cut(s) 151, 310, 323, 586, 689
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 121, 652, 780
Hpy188III TCNNGA 5 cut(s) 32, 416, 446, 494, 641
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 571, 668
HpyCH4III ACNGT 2 cut(s) 23, 392
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 209, 626, 664, 683, 731
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 130, 623, 661, 664
HpyF3I CTNAG 4 cut(s) 447, 483, 495, 765
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 2 cut(s) 335, 550
HspAI GCGC 1 cut(s) 617
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 322, 384, 409
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 1 cut(s) 676
LweI GCATC 6 cut(s) 389, 604, 613, 670, 692, 740
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 515
MalI GATC 3 cut(s) 324, 386, 411
MboI GATC 3 cut(s) 322, 384, 409
MboII GAAGA 6 cut(s) 20, 37, 313, 316, 404, 656
MfeI CAATTG 2 cut(s) 62, 223
MluCI AATT 2 cut(s) 62, 223
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 9 cut(s) 177, 248, 265, 274, 442, 561, 669, 748, 760
Mph1103I ATGCAT 2 cut(s) 628, 685
MseI TTAA 2 cut(s) 108, 368
MspI CCGG 5 cut(s) 87, 340, 377, 668, 698
MunI CAATTG 2 cut(s) 62, 223
Mva1269I GAATGC 1 cut(s) 787
MwoI GCNNNNNNNGC 5 cut(s) 96, 130, 623, 661, 664
NdeII GATC 3 cut(s) 322, 384, 409
NlaIII CATG 2 cut(s) 335, 550
NlaIV GGNNCC 4 cut(s) 57, 438, 492, 654
NsiI ATGCAT 2 cut(s) 628, 685
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 117
PctI GAATGC 1 cut(s) 787
PfeI GAWTC 3 cut(s) 42, 83, 647
PkrI GCNGC 3 cut(s) 271, 657, 666
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 4 cut(s) 57, 438, 492, 654
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 666
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 108, 368
SatI GCNGC 3 cut(s) 270, 656, 665
Sau3AI GATC 3 cut(s) 322, 384, 409
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 164
SetI ASST 6 cut(s) 126, 207, 251, 330, 474, 679
SfaNI GCATC 6 cut(s) 389, 604, 613, 670, 692, 740
SfcI CTRYAG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 416, 639
SmoI CTYRAG 2 cut(s) 416, 639
Sse9I AATT 2 cut(s) 62, 223
SsiI CCGC 3 cut(s) 75, 270, 656
SspMI CTAG 1 cut(s) 125
StyI CCWWGG 3 cut(s) 197, 360, 472
TaaI ACNGT 2 cut(s) 23, 392
TaiI ACGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 81, 351, 383
TaqII GACCGA 1 cut(s) 176
TasI AATT 2 cut(s) 62, 223
TauI GCSGC 2 cut(s) 272, 658
TfiI GAWTC 3 cut(s) 42, 83, 647
Tru1I TTAA 2 cut(s) 108, 368
Tru9I TTAA 2 cut(s) 108, 368
TscAI CASTG 3 cut(s) 26, 395, 588
TseI GCWGC 1 cut(s) 664
TspDTI ATGAA 5 cut(s) 17, 320, 440, 452, 563
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 3 cut(s) 26, 395, 588
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 2 cut(s) 628, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.