FvH4_6g13930

Deoxyribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006626
Physical Location & Seq
Forward (+)
8541245 .. 8542319
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13930.t1

Sequence Viewer

Length: 807 bp
ATGAAGTTGTTTGACGCACACTGTCATCTTCAAGACCCAAGAATCTTCCACAAGGCACCCCAACTGATTGCTTCAGCCATCGATTCCGGCGTGGTTCGATTCGCCGTTAATGGGGTCTCCGAGCAAGACTGGCCTTTGGTGAAGCAGATGGGCGAGTCTCATCATCCTCATATAATTCCCTGCTTCGGTCTCCACCCTTGGTATGTTGCGGACAGAACACCCAATTGGCTCAATACCCTCAAACAAAGCTTTGCTTCCACACCCTCTGCCGCAGTCGGAGAGATTGGATTGGACAAAGGGAAGAAGATGGGTGATTTCGCCGATCAGGTTCATGTGTTCCGGCAGCAACTCGAACTCGCCAAGGAGTTAAAGAGGCCGGCGTCCATCCACTGCGTTCGAGCTTTCGGCGATCTTCTTGAGATAATGAACTCATTGGGGCCGTTTCCTGAGGGGTTTATACTTCATTCTTACCTTGGCTCTGCTGAGATGGTTCCTGAGTTTGCCAATCTGGGTGGTTACTTTTCGTTTTCGGGGTTTCTTATGTCCATGAAAACGAGCAAGGCTAAGAGGATGGTGAAGGCAGTGCCATTTGATAGGCTTTTACTGGAGACGGATGCGCCTGATGCATTGCCTAAGTCTCAAGGAGAATCGGAGCCGCCTCTGCAGCCGGTTGAAGGTGATGCATCGCTGAACCATCCGGCAAATATTCACAATGTGCTGGTATATGTTGCATCTTTGTTGGAGATGGACAAGGAAGGAGTTGCCGAAGCAAGTTACCAGAATGCTGTGCGTTTGTTCTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

269

Amino Acids

29.65

Weight (kDa)

6.04

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 4 - 267 6.2e-64 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 3 cut(s) 209, 270, 656
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 715
AfiI CCNNNNNNNGG 3 cut(s) 111, 185, 674
AgsI TTSAA 2 cut(s) 32, 674
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 249, 401
AluI AGCT 2 cut(s) 249, 401
Alw26I GTCTC 5 cut(s) 121, 162, 194, 602, 642
AoxI GGCC 3 cut(s) 131, 374, 437
ApeKI GCWGC 2 cut(s) 343, 664
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 4 cut(s) 151, 323, 586, 689
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 355, 676
BccI CCATC 8 cut(s) 86, 142, 301, 392, 481, 565, 702, 739
BceAI ACGGC 2 cut(s) 89, 424
BcoDI GTCTC 5 cut(s) 121, 162, 194, 602, 642
BfmI CTRYAG 1 cut(s) 662
BisI GCNGC 4 cut(s) 270, 344, 656, 665
BlsI GCNGC 4 cut(s) 271, 345, 657, 666
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 4 cut(s) 57, 438, 492, 654
BmsI GCATC 5 cut(s) 604, 613, 670, 692, 740
BpmI CTGGAG 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 437, 624
Bsa29I ATCGAT 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 380
BsaI GGTCTC 2 cut(s) 121, 194
BsaJI CCNNGG 3 cut(s) 197, 360, 472
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 185, 674
Bse118I RCCGGY 2 cut(s) 376, 667
Bse1I ACTGG 2 cut(s) 134, 609
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 626
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 197, 360, 472
BseGI GGATG 5 cut(s) 163, 384, 576, 619, 694
BseLI CCNNNNNNNGG 3 cut(s) 111, 185, 674
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 3 cut(s) 438, 474, 486
BseNI ACTGG 2 cut(s) 134, 609
BseXI GCAGC 2 cut(s) 355, 676
BshFI GGCC 3 cut(s) 133, 376, 439
BshNI GGYRCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 81
BsiSI CCGG 5 cut(s) 87, 340, 377, 668, 698
BslI CCNNNNNNNGG 3 cut(s) 111, 185, 674
BsmAI GTCTC 5 cut(s) 121, 162, 194, 602, 642
BsmBI CGTCTC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 3 cut(s) 133, 376, 439
Bso31I GGTCTC 2 cut(s) 121, 194
Bsp143I GATC 2 cut(s) 322, 409
BspACI CCGC 3 cut(s) 209, 270, 656
BspANI GGCC 3 cut(s) 133, 376, 439
BspCNI CTCAG 3 cut(s) 439, 475, 487
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 4 cut(s) 57, 438, 492, 654
BspMAI CTGCAG 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 2 cut(s) 121, 194
BsrDI GCAATG 1 cut(s) 626
BsrFI RCCGGY 2 cut(s) 376, 667
BsrI ACTGG 2 cut(s) 134, 609
BssAI RCCGGY 2 cut(s) 376, 667
BssECI CCNNGG 3 cut(s) 197, 360, 472
BssMI GATC 2 cut(s) 322, 409
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 3 cut(s) 197, 360, 472
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 5 cut(s) 447, 483, 495, 564, 633
BstF5I GGATG 5 cut(s) 163, 384, 576, 619, 694
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 2 cut(s) 325, 412
BstMAI GTCTC 5 cut(s) 121, 162, 194, 602, 642
BstMBI GATC 2 cut(s) 322, 409
BstMWI GCNNNNNNNGC 4 cut(s) 130, 623, 661, 664
BstSFI CTRYAG 1 cut(s) 662
BstV1I GCAGC 2 cut(s) 355, 676
Bsu15I ATCGAT 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 133, 376, 439
BsuTUI ATCGAT 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 5 cut(s) 163, 384, 576, 619, 694
BtsI GCAGTG 2 cut(s) 388, 588
BtsIMutI CAGTG 3 cut(s) 19, 388, 588
Cac8I GCNNGC 1 cut(s) 378
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 2 cut(s) 376, 667
Cfr13I GGNCC 1 cut(s) 437
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 2 cut(s) 23, 369
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 2 cut(s) 332, 547
DdeI CTNAG 5 cut(s) 447, 483, 495, 564, 633
DpnI GATC 2 cut(s) 324, 411
DpnII GATC 2 cut(s) 322, 409
DraIII CACNNNGTG 1 cut(s) 715
Eco130I CCWWGG 3 cut(s) 197, 360, 472
Eco31I GGTCTC 2 cut(s) 121, 194
Eco57I CTGAAG 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 447
EcoT14I CCWWGG 3 cut(s) 197, 360, 472
EcoT22I ATGCAT 2 cut(s) 628, 685
ErhI CCWWGG 3 cut(s) 197, 360, 472
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 2 cut(s) 335, 550
FaiI YATR 9 cut(s) 171, 173, 204, 333, 458, 542, 548, 724, 726
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FatI CATG 2 cut(s) 331, 546
Fnu4HI GCNGC 4 cut(s) 270, 344, 656, 665
FokI GGATG 5 cut(s) 150, 371, 583, 626, 681
Fsp4HI GCNGC 4 cut(s) 270, 344, 656, 665
GlaI GCGC 1 cut(s) 618
GluI GCNGC 4 cut(s) 270, 344, 656, 665
GsuI CTGGAG 1 cut(s) 626
HaeIII GGCC 3 cut(s) 133, 376, 439
HapII CCGG 5 cut(s) 87, 340, 377, 668, 698
HgaI GACGC 2 cut(s) 23, 369
HhaI GCGC 1 cut(s) 619
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 2 cut(s) 335, 550
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 5 cut(s) 42, 83, 99, 155, 647
HpaII CCGG 5 cut(s) 87, 340, 377, 668, 698
HphI GGTGA 4 cut(s) 151, 323, 586, 689
Hpy188I TCNGA 3 cut(s) 121, 278, 652
Hpy188III TCNNGA 4 cut(s) 32, 416, 446, 494
HpyAV CCTTC 3 cut(s) 571, 668, 749
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 626, 664, 683, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 623, 661, 664
HpyF3I CTNAG 5 cut(s) 447, 483, 495, 564, 633
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 2 cut(s) 335, 550
HspAI GCGC 1 cut(s) 617
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 2 cut(s) 322, 409
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 2 cut(s) 355, 676
LweI GCATC 5 cut(s) 604, 613, 670, 692, 740
MaeIII GTNAC 2 cut(s) 515, 773
MalI GATC 2 cut(s) 324, 411
MboI GATC 2 cut(s) 322, 409
MboII GAAGA 5 cut(s) 20, 37, 313, 316, 404
MfeI CAATTG 1 cut(s) 223
MluCI AATT 2 cut(s) 174, 223
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 256, 720
MnlI CCTC 7 cut(s) 177, 248, 274, 366, 442, 561, 669
Mph1103I ATGCAT 2 cut(s) 628, 685
MroNI GCCGGC 1 cut(s) 376
MseI TTAA 2 cut(s) 108, 368
MspI CCGG 5 cut(s) 87, 340, 377, 668, 698
MunI CAATTG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 787
MwoI GCNNNNNNNGC 4 cut(s) 130, 623, 661, 664
NaeI GCCGGC 1 cut(s) 378
NdeII GATC 2 cut(s) 322, 409
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 2 cut(s) 335, 550
NlaIV GGNNCC 4 cut(s) 57, 438, 492, 654
NsiI ATGCAT 2 cut(s) 628, 685
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 787
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 42, 83, 99, 647
PkrI GCNGC 4 cut(s) 271, 345, 657, 666
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 4 cut(s) 57, 438, 492, 654
PspPI GGNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 666
SaqAI TTAA 2 cut(s) 108, 368
SatI GCNGC 4 cut(s) 270, 344, 656, 665
Sau3AI GATC 2 cut(s) 322, 409
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 164
SetI ASST 5 cut(s) 251, 330, 403, 474, 679
SfaNI GCATC 5 cut(s) 604, 613, 670, 692, 740
SfcI CTRYAG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 416, 639
SmoI CTYRAG 2 cut(s) 416, 639
Sse9I AATT 2 cut(s) 174, 223
SsiI CCGC 3 cut(s) 209, 270, 656
SspI AATATT 1 cut(s) 706
StyI CCWWGG 3 cut(s) 197, 360, 472
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 4 cut(s) 81, 97, 351, 397
TaqII GACCGA 1 cut(s) 176
TasI AATT 2 cut(s) 174, 223
TauI GCSGC 2 cut(s) 272, 658
TfiI GAWTC 4 cut(s) 42, 83, 99, 647
Tru1I TTAA 2 cut(s) 108, 368
Tru9I TTAA 2 cut(s) 108, 368
TscAI CASTG 3 cut(s) 26, 395, 588
TseI GCWGC 2 cut(s) 343, 664
TspDTI ATGAA 5 cut(s) 17, 320, 440, 452, 563
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 3 cut(s) 26, 395, 588
Zsp2I ATGCAT 2 cut(s) 628, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.