AT5G17570

TatD related DNase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006626
Physical Location & Seq
Forward (+)
5792926 .. 5795107
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17570.2

Sequence Viewer

Length: 978 bp
ATGAAACTGTTCGACGCGCACTGTCACCTTCAAGACCCGAGGATTATCACCAAAGCTCCTCAGATAATCTCCTCCGCCGTTGCTTCCGGCGTCTCTGCTTTCGCCGTCAATGGAGTCTCCGAGAAAGATTGGAGTTTGGTCAAAGAGATGGGAGCTAAATACCCTTCTGTTGTTCCTTGCTTTGGGATCCATCCATGGTATGTAGCAGAGAGGAGTCCTCAATGGTTTGAGACATTAAAGAGTTTCTTTGAGACCACTCCTACTGCTGCTGTTGGAGAAATTGGTTTGGACAAAGGGTCTAAGGGAAGGGAGATTGATTTCTCAGAACAGGTTACCGTCTTTCGTCAACAGCTTGAACTTGCAAAGGAATTGAAGAAACCTGCGTCAGTTCATTGTGTTCGTGCATTTGGGGATCTACTCGAGATATTAAAATCTGTAGGGCCTTTTCCTTCTGGGGTCATGCTTCACTCGTATTTGGGTTCTGCTGAGATGGTTCCTGAATTTGCTAAGCTCGGTGCATATTTCTCCTTCTCCGGTTTCCTTATGTCCATGAGTGAGAAAAAAGCCAAGAAGATGTTGAAAGCAGTTCCATCTGATAGGATCTTATTGGAGACGGATTCACCAGATGCACTACCAAAGGCAGAGTCAGGTTGTCTCTACTTTGTAGACGGAGATCCTTCTCTACCCGAAGAAGGAAATTCAGCTCAGGATCTTGATTCTGCTTCATATGATAAGCCTAATGTGTCTAGTGACTCGATGAAGTTAACAAAGGAAACACTTAATCACCCGGCTAATATTCATATCGTACTCGGATATGTAGCGCAGTTGTTGGATATGAAGAATGAAGAACTCGCGGAACTAAGTTATCAAAATGCTGTTCGGTTATTCTCTTACGAAGGTTCAAAGATACTTCTTGACAGAGGTACTGGTGATGTCTCTGGTCACACTCAAAACCAGTCAACAACACATGTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TatD_DNase

Protein Analysis

325

Amino Acids

35.58

Weight (kDa)

5.53

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatD_DNase PF01026 4 - 297 1e-67 TatD related DNase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 666
AccII CGCG 2 cut(s) 17, 854
AciI CCGC 2 cut(s) 75, 854
AclWI GGATC 6 cut(s) 181, 194, 420, 608, 668, 717
AcsI RAATTY 2 cut(s) 500, 697
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 807, 925
AfiI CCNNNNNNNGG 2 cut(s) 182, 692
AflIII ACRYGT 1 cut(s) 967
AgsI TTSAA 5 cut(s) 32, 356, 373, 580, 903
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 5 cut(s) 56, 155, 352, 511, 704
AluI AGCT 5 cut(s) 56, 155, 352, 511, 704
Alw26I GTCTC 7 cut(s) 97, 121, 224, 245, 605, 659, 940
AlwI GGATC 6 cut(s) 181, 194, 420, 608, 668, 717
Ama87I CYCGRG 2 cut(s) 37, 419
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 2 cut(s) 500, 697
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 19, 823
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 5 cut(s) 17, 40, 612, 776, 941
AvaI CYCGRG 2 cut(s) 37, 419
BaeI ACNNNNGTAYC 1 cut(s) 954
BamHI GGATCC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 253
BccI CCATC 4 cut(s) 142, 198, 484, 598
BceAI ACGGC 2 cut(s) 62, 89
BcnI CCSGG 1 cut(s) 788
BcoDI GTCTC 7 cut(s) 97, 121, 224, 245, 605, 659, 940
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 388
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 788
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 37, 419
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 2 cut(s) 188, 495
BmrFI CCNGG 1 cut(s) 788
BmsI GCATC 1 cut(s) 616
BplI GAGNNNNNCTC 2 cut(s) 202, 234
Bpu10I CCTNAGC 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 788
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 38, 194
BsaWI WCCGGW 1 cut(s) 533
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 692
Bse1I ACTGG 2 cut(s) 931, 955
BseDI CCNNGG 2 cut(s) 38, 194
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 182, 692
BseMII CTCAG 4 cut(s) 74, 336, 477, 719
BseNI ACTGG 2 cut(s) 931, 955
BseRI GAGGAG 3 cut(s) 48, 61, 226
BseXI GCAGC 1 cut(s) 253
Bsh1236I CGCG 2 cut(s) 17, 854
BshFI GGCC 1 cut(s) 442
BsiHKCI CYCGRG 2 cut(s) 37, 419
BsiSI CCGG 3 cut(s) 87, 534, 788
BslI CCNNNNNNNGG 2 cut(s) 182, 692
BsmAI GTCTC 7 cut(s) 97, 121, 224, 245, 605, 659, 940
BsmBI CGTCTC 2 cut(s) 97, 605
BsnI GGCC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 2 cut(s) 37, 419
Bsp143I GATC 5 cut(s) 186, 412, 600, 673, 709
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 2 cut(s) 75, 854
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 4 cut(s) 73, 335, 478, 718
BspFNI CGCG 2 cut(s) 17, 854
BspHI TCATGA 1 cut(s) 974
BspLI GGNNCC 2 cut(s) 188, 495
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 6 cut(s) 181, 194, 420, 608, 668, 717
BspTNI GGTCTC 1 cut(s) 245
BsrI ACTGG 2 cut(s) 931, 955
BssECI CCNNGG 2 cut(s) 38, 194
BssMI GATC 5 cut(s) 186, 412, 600, 673, 709
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 3 cut(s) 9, 23, 337
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 7 cut(s) 60, 300, 322, 486, 507, 705, 860
BstDSI CCRYGG 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 331
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 2 cut(s) 17, 854
BstHHI GCGC 2 cut(s) 19, 823
BstKTI GATC 5 cut(s) 189, 415, 603, 676, 712
BstMAI GTCTC 7 cut(s) 97, 121, 224, 245, 605, 659, 940
BstMBI GATC 5 cut(s) 186, 412, 600, 673, 709
BstNSI RCATGY 1 cut(s) 971
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 786
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 2 cut(s) 17, 854
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 5 cut(s) 186, 412, 600, 673, 709
BstYI RGATCY 5 cut(s) 186, 412, 600, 673, 709
BsuRI GGCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 388
CciI TCATGA 1 cut(s) 974
CfoI GCGC 2 cut(s) 19, 823
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 3 cut(s) 23, 79, 372
Csp6I GTAC 2 cut(s) 806, 924
CviAII CATG 5 cut(s) 195, 460, 550, 968, 975
CviJI RGCY 9 cut(s) 56, 155, 352, 442, 511, 566, 704, 736, 791
CviKI_1 RGCY 9 cut(s) 56, 155, 352, 442, 511, 566, 704, 736, 791
CviQI GTAC 2 cut(s) 806, 924
DdeI CTNAG 7 cut(s) 60, 300, 322, 486, 507, 705, 860
DpnI GATC 5 cut(s) 188, 414, 602, 675, 711
DpnII GATC 5 cut(s) 186, 412, 600, 673, 709
DriI GACNNNNNGTC 1 cut(s) 295
Eam1105I GACNNNNNGTC 1 cut(s) 295
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 245
Eco88I CYCGRG 2 cut(s) 37, 419
Eco91I GGTNACC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 2 cut(s) 97, 605
FaeI CATG 5 cut(s) 198, 463, 553, 971, 978
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 5 cut(s) 194, 459, 549, 967, 974
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 747
GlaI GCGC 2 cut(s) 18, 822
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 442
HapII CCGG 3 cut(s) 87, 534, 788
HgaI GACGC 3 cut(s) 23, 79, 372
HhaI GCGC 2 cut(s) 19, 823
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 5 cut(s) 198, 463, 553, 971, 978
Hin6I GCGC 2 cut(s) 17, 821
HinP1I GCGC 2 cut(s) 17, 821
HincII GTYRAC 3 cut(s) 347, 765, 960
HindII GTYRAC 3 cut(s) 347, 765, 960
HinfI GANTC 6 cut(s) 114, 214, 617, 644, 716, 752
HpaI GTTAAC 1 cut(s) 765
HpaII CCGG 3 cut(s) 87, 534, 788
HphI GGTGA 5 cut(s) 17, 40, 612, 776, 941
Hpy166II GTNNAC 4 cut(s) 347, 667, 765, 960
Hpy188I TCNGA 5 cut(s) 63, 121, 325, 595, 812
Hpy188III TCNNGA 7 cut(s) 32, 421, 497, 707, 713, 914, 975
Hpy8I GTNNAC 4 cut(s) 347, 667, 765, 960
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 8 cut(s) 38, 174, 300, 459, 538, 686, 687, 890
HpyCH4III ACNGT 3 cut(s) 9, 23, 337
HpyCH4V TGCA 4 cut(s) 362, 404, 518, 629
HpyF3I CTNAG 7 cut(s) 60, 300, 322, 486, 507, 705, 860
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 5 cut(s) 198, 463, 553, 971, 978
HspAI GCGC 2 cut(s) 17, 821
KspAI GTTAAC 1 cut(s) 765
Kzo9I GATC 5 cut(s) 186, 412, 600, 673, 709
LmnI GCTCC 2 cut(s) 61, 152
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 616
MaeI CTAG 1 cut(s) 747
MaeIII GTNAC 4 cut(s) 23, 331, 749, 941
MalI GATC 5 cut(s) 188, 414, 602, 675, 711
MboI GATC 5 cut(s) 186, 412, 600, 673, 709
MboII GAAGA 5 cut(s) 385, 583, 701, 850, 857
MflI RGATCY 5 cut(s) 186, 412, 600, 673, 709
MluCI AATT 4 cut(s) 279, 368, 500, 697
MlyI GAGTC 4 cut(s) 123, 223, 653, 746
MmeI TCCRAC 2 cut(s) 253, 810
MnlI CCTC 6 cut(s) 33, 69, 82, 204, 228, 914
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 236, 428, 764, 780
MspI CCGG 3 cut(s) 87, 534, 788
MspR9I CCNGG 1 cut(s) 788
MvnI CGCG 2 cut(s) 17, 854
NciI CCSGG 1 cut(s) 788
NcoI CCATGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 727
NdeII GATC 5 cut(s) 186, 412, 600, 673, 709
NlaIII CATG 5 cut(s) 198, 463, 553, 971, 978
NlaIV GGNNCC 2 cut(s) 188, 495
NmuCI GTSAC 3 cut(s) 23, 749, 941
NspI RCATGY 1 cut(s) 971
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 1 cut(s) 974
PciI ACATGT 1 cut(s) 967
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 617, 716
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 4 cut(s) 122, 222, 652, 746
PpsI GAGTC 4 cut(s) 122, 222, 652, 746
PscI ACATGT 1 cut(s) 967
PspEI GGTNACC 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 188, 495
PspPI GGNCC 1 cut(s) 440
PsuI RGATCY 5 cut(s) 186, 412, 600, 673, 709
RsaI GTAC 2 cut(s) 807, 925
RsaNI GTAC 2 cut(s) 806, 924
SaqAI TTAA 4 cut(s) 236, 428, 764, 780
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 5 cut(s) 186, 412, 600, 673, 709
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 4 cut(s) 123, 223, 653, 746
ScrFI CCNGG 1 cut(s) 788
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 435
Sfr274I CTCGAG 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 279, 368, 500, 697
SsiI CCGC 2 cut(s) 75, 854
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 1 cut(s) 786
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 9, 23, 337
TaqI TCGA 3 cut(s) 12, 420, 755
TasI AATT 4 cut(s) 279, 368, 500, 697
TfiI GAWTC 2 cut(s) 617, 716
Tru1I TTAA 4 cut(s) 236, 428, 764, 780
Tru9I TTAA 4 cut(s) 236, 428, 764, 780
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 3 cut(s) 23, 749, 941
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 3 cut(s) 23, 749, 941
TspDTI ATGAA 7 cut(s) 17, 380, 714, 773, 788, 851, 858
TspGWI ACGGA 2 cut(s) 629, 684
TspRI CASTG 1 cut(s) 26
XapI RAATTY 2 cut(s) 500, 697
XceI RCATGY 1 cut(s) 971
XhoI CTCGAG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.