MD04G1125700.v1.1

SLT1 protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
21216871 .. 21219352
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1125700.v1.1.491

Sequence Viewer

Length: 1494 bp
ATGCTCACGGCCCTGTCAATGGAGAATCACCACCCGTCCACGCTCTTGTCCATGGATTCCAGCGCTTCCTCTCACGACGAATTGGATTTGGAGATGAATCGACAGATCATACTTTCCGGCCCCCCTGATATAAATTTGCCCCTGTCAGCCGAGCGCAGCCCACCTCCACCTTCGTGGAATTCAGACGCTTGTGATATTCTAGATGTTGGCCTTGGCCCACAGGTGTATGAGACTGAGAGTTTGCTTACAATGCCCAAGGTTGGACGGAAATGCGCCAAGCGAGTAGACAGCATATGGGGCGCTTGGTTCTTCTTCAGTTTTTACTTCAAGCCCGCATTGAATGAGAAGTCAAAGGCCAAAATCGTCCGGGACAGTAATGGTGTTTCTGGGTATGAGAAATCTGATCTCAAGCTTGATGTTTTCATGGTTCAGCATGACATGGAGAACATGTACATGTGGGTTTTCAAGGAGAGGCCTGAGAATGCTTTGGGGAAGATGCAGCTAAGGAGCTACATGAATGGGCATTCCCGCCAAGGGGAGCGTCTGTTTCCATTTAGTGTCGACAAGGGTTTTGCTCGATCTCACAGGATGCAGCGGAAGCATTATAGGGGTCTTTCAAACCCCCAATGTGTGCATGGGATTGAGCTTGTTCGGTCACCTAATCTCATCGGTCTTGATGAAGAAGACCGTAAAAGGTGGATGGAACTGACTGGGAGGGATGTGAACTTCACAATTCCTATGGAAGCAGGGGATTTTAGTTCTTGGAGAAACCTTCCGAATACAGATTTCGAGCTTGAGAGGCCACCTGCTCCAATAAAGAGCGCGCCCAATTCTCACTCAAAGAAACTTCTGAATGGGTCTGGGCTCAATTTGTCTACCCAGCCATCTATCAACAACAATTCTGATGGAATGGACCTTTCTCCTGTCAGCAAGAGGAGGAAGGAGTTTTTCCCCCACGGGAATGATGACGATTGCTACCTGGCTGTTAATCCTCCGTCCGATCGAATCCCAGATACGGAAACCCACCCAAATGAGGTGCAATGGCCAAATCAATTTAGTGGTGTAATGAAGAACGTCTACGGGCCTGTTACAGCTGCAAAAACAATCTATGAGGATGATGCAGGTTATTTAATCATCATCAGCTTACCCTTTGTGGATCTTCAAAGGGTGAAAGTTTCTTGGAGGAATACTTTTACTCAAGGCATCATTAAGGTATCTTGTATAAGCACATCTCGCTTGCCATACATCAAGAGACATGATCGGACTTTCATTCTTACGGATCCAGCCTCTGAGCATTGTTCCCCAGGAGAGTTTGTCAGGGAAATCCCGCTTGCCACCCGCATTCCTGAAGACGCTAACATAGAAGCTTATTACGACGGGCCAGGCTCTGTGCTTGAGATTATGGTTCCAAAACTCCGCGCTGGGCCAGAAGAACATGAGGTTCGTGTTTGCCTACGCCCTCACCTTGGAGGCAATGATCTCATGTTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

498

Amino Acids

56.25

Weight (kDa)

6.04

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 90 - 256 9.2e-102 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 363 - 471 3.9e-55 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc36I ACCTGC 2 cut(s) 814, 1112
AccI GTMKAC 4 cut(s) 285, 561, 875, 1077
AccII CGCG 2 cut(s) 824, 1419
AciI CCGC 6 cut(s) 333, 529, 595, 1328, 1339, 1417
AclWI GGATC 3 cut(s) 1164, 1274, 1287
AcoI YGGCCR 1 cut(s) 1043
AcsI RAATTY 2 cut(s) 133, 178
AcuI CTGAAG 2 cut(s) 298, 1368
AfaI GTAC 1 cut(s) 452
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 7 cut(s) 19, 260, 534, 535, 1015, 1033, 1466
AflIII ACRYGT 2 cut(s) 447, 453
AgsI TTSAA 5 cut(s) 328, 340, 466, 618, 1163
AjnI CCWGG 3 cut(s) 978, 1303, 1381
AleI CACNNNNGTG 1 cut(s) 172
AluBI AGCT 8 cut(s) 412, 502, 510, 646, 793, 1094, 1143, 1367
AluI AGCT 8 cut(s) 412, 502, 510, 646, 793, 1094, 1143, 1367
Alw26I GTCTC 2 cut(s) 224, 1246
AlwI GGATC 3 cut(s) 1164, 1274, 1287
AlwNI CAGNNNCTG 2 cut(s) 1289, 1388
Aor51HI AGCGCT 1 cut(s) 64
ApeKI GCWGC 4 cut(s) 156, 499, 592, 1094
ApoI RAATTY 2 cut(s) 133, 178
ArsI GACNNNNNNTTYG 4 cut(s) 223, 255, 554, 586
AspLEI GCGC 7 cut(s) 65, 156, 275, 302, 824, 826, 1421
AspS9I GGNCC 7 cut(s) 10, 119, 215, 913, 1082, 1379, 1424
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 4 cut(s) 20, 648, 1180, 1454
AvaII GGWCC 1 cut(s) 913
BalI TGGCCA 1 cut(s) 1045
BamHI GGATCC 1 cut(s) 1279
BanII GRGCYC 1 cut(s) 867
BarI GAAGNNNNNNTAC 2 cut(s) 1061, 1093
BbsI GAAGAC 2 cut(s) 690, 1356
BbvI GCAGC 4 cut(s) 168, 511, 604, 1081
BccI CCATC 3 cut(s) 694, 892, 899
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 3 cut(s) 980, 1305, 1383
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 2 cut(s) 224, 1246
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 2 cut(s) 66, 303
BfuAI ACCTGC 2 cut(s) 814, 1112
BisI GCNGC 4 cut(s) 157, 500, 593, 1095
BlsI GCNGC 4 cut(s) 158, 501, 594, 1096
Bme1390I CCNGG 4 cut(s) 368, 980, 1305, 1383
Bme18I GGWCC 1 cut(s) 913
BmgT120I GGNCC 7 cut(s) 10, 119, 215, 913, 1082, 1379, 1424
BmiI GGNNCC 3 cut(s) 121, 1281, 1407
BmrFI CCNGG 4 cut(s) 368, 980, 1305, 1383
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 4 cut(s) 486, 579, 1108, 1212
BmuI ACTGGG 1 cut(s) 720
BpiI GAAGAC 2 cut(s) 690, 1356
Bpu10I CCTNAGC 1 cut(s) 503
BpuEI CTTGAG 4 cut(s) 392, 815, 1182, 1415
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 7 cut(s) 51, 211, 255, 532, 955, 1303, 1465
BsaXI ACNNNNNCTCC 6 cut(s) 434, 464, 530, 560, 1299, 1329
Bsc4I CCNNNNNNNGG 7 cut(s) 19, 260, 534, 535, 1015, 1033, 1466
Bse1I ACTGG 1 cut(s) 715
Bse3DI GCAATG 2 cut(s) 1046, 1480
BseBI CCWGG 3 cut(s) 980, 1305, 1383
BseDI CCNNGG 7 cut(s) 51, 211, 255, 532, 955, 1303, 1465
BseGI GGATG 4 cut(s) 594, 705, 724, 1120
BseLI CCNNNNNNNGG 7 cut(s) 19, 260, 534, 535, 1015, 1033, 1466
BseMI GCAATG 2 cut(s) 1046, 1480
BseMII CTCAG 3 cut(s) 225, 468, 1281
BseNI ACTGG 1 cut(s) 715
BsePI GCGCGC 1 cut(s) 822
BseRI GAGGAG 1 cut(s) 949
BseXI GCAGC 4 cut(s) 168, 511, 604, 1081
BseYI CCCAGC 2 cut(s) 879, 1421
Bsh1236I CGCG 2 cut(s) 824, 1419
Bsh1285I CGRYCG 1 cut(s) 1003
BsiEI CGRYCG 1 cut(s) 1003
BsiSI CCGG 2 cut(s) 117, 367
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 7 cut(s) 19, 260, 534, 535, 1015, 1033, 1466
BsmAI GTCTC 2 cut(s) 224, 1246
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 3 cut(s) 487, 523, 1341
Bsp1286I GDGCHC 1 cut(s) 867
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 6 cut(s) 333, 529, 595, 1328, 1339, 1417
BspCNI CTCAG 3 cut(s) 226, 469, 1282
BspFNI CGCG 2 cut(s) 824, 1419
BspLI GGNNCC 3 cut(s) 121, 1281, 1407
BspMI ACCTGC 2 cut(s) 814, 1112
BspPI GGATC 3 cut(s) 1164, 1274, 1287
BsrDI GCAATG 2 cut(s) 1046, 1480
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 7 cut(s) 51, 211, 255, 532, 955, 1303, 1465
BssHII GCGCGC 1 cut(s) 822
BssMI GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
BssT1I CCWWGG 5 cut(s) 51, 211, 255, 532, 1465
Bst2UI CCWGG 3 cut(s) 980, 1305, 1383
Bst4CI ACNGT 2 cut(s) 374, 689
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 4 cut(s) 333, 824, 1238, 1332
BstDEI CTNAG 4 cut(s) 234, 477, 503, 1290
BstDSI CCRYGG 2 cut(s) 51, 955
BstEII GGTNACC 1 cut(s) 654
BstF5I GGATG 4 cut(s) 594, 705, 724, 1120
BstFNI CGCG 2 cut(s) 824, 1419
BstH2I RGCGCY 2 cut(s) 66, 303
BstHHI GCGC 7 cut(s) 65, 156, 275, 302, 824, 826, 1421
BstKTI GATC 8 cut(s) 108, 406, 581, 1003, 1159, 1261, 1282, 1480
BstMAI GTCTC 2 cut(s) 224, 1246
BstMBI GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
BstMCI CGRYCG 1 cut(s) 1003
BstMWI GCNNNNNNNGC 5 cut(s) 250, 297, 598, 799, 1233
BstNI CCWGG 3 cut(s) 980, 1305, 1383
BstNSI RCATGY 2 cut(s) 451, 457
BstPI GGTNACC 1 cut(s) 654
BstSCI CCNGG 4 cut(s) 366, 978, 1303, 1381
BstUI CGCG 2 cut(s) 824, 1419
BstV1I GCAGC 4 cut(s) 168, 511, 604, 1081
BstV2I GAAGAC 2 cut(s) 690, 1356
BstX2I RGATCY 2 cut(s) 1156, 1279
BstXI CCANNNNNNTGG 1 cut(s) 174
BstYI RGATCY 2 cut(s) 1156, 1279
BtgI CCRYGG 2 cut(s) 51, 955
BtsCI GGATG 4 cut(s) 594, 705, 724, 1120
BveI ACCTGC 2 cut(s) 814, 1112
Cac8I GCNNGC 4 cut(s) 333, 824, 1238, 1332
CaiI CAGNNNCTG 2 cut(s) 1289, 1388
CfoI GCGC 7 cut(s) 65, 156, 275, 302, 824, 826, 1421
Cfr13I GGNCC 7 cut(s) 10, 119, 215, 913, 1082, 1379, 1424
CseI GACGC 3 cut(s) 194, 530, 1361
Csp6I GTAC 1 cut(s) 451
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 4 cut(s) 234, 477, 503, 1290
DpnI GATC 8 cut(s) 107, 405, 580, 1002, 1158, 1260, 1281, 1479
DpnII GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
EaeI YGGCCR 1 cut(s) 1043
Eco130I CCWWGG 5 cut(s) 51, 211, 255, 532, 1465
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 867
Eco47I GGWCC 1 cut(s) 913
Eco47III AGCGCT 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 298, 1368
Eco91I GGTNACC 1 cut(s) 654
EcoO65I GGTNACC 1 cut(s) 654
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 978, 1303, 1381
EcoT14I CCWWGG 5 cut(s) 51, 211, 255, 532, 1465
EcoT38I GRGCYC 1 cut(s) 867
ErhI CCWWGG 5 cut(s) 51, 211, 255, 532, 1465
FaqI GGGAC 1 cut(s) 383
FauI CCCGC 4 cut(s) 340, 536, 1335, 1346
FauNDI CATATG 1 cut(s) 293
FblI GTMKAC 4 cut(s) 285, 561, 875, 1077
Fnu4HI GCNGC 4 cut(s) 157, 500, 593, 1095
FokI GGATG 4 cut(s) 601, 712, 731, 1127
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 4 cut(s) 157, 500, 593, 1095
FspBI CTAG 1 cut(s) 200
GlaI GCGC 7 cut(s) 64, 155, 274, 301, 823, 825, 1420
GluI GCNGC 4 cut(s) 157, 500, 593, 1095
GsaI CCCAGC 2 cut(s) 883, 1425
HaeII RGCGCY 2 cut(s) 66, 303
HapII CCGG 2 cut(s) 117, 367
HgaI GACGC 3 cut(s) 194, 530, 1361
HhaI GCGC 7 cut(s) 65, 156, 275, 302, 824, 826, 1421
Hin6I GCGC 7 cut(s) 63, 154, 273, 300, 822, 824, 1419
HinP1I GCGC 7 cut(s) 63, 154, 273, 300, 822, 824, 1419
HincII GTYRAC 2 cut(s) 562, 1488
HindII GTYRAC 2 cut(s) 562, 1488
HindIII AAGCTT 2 cut(s) 410, 1365
HinfI GANTC 4 cut(s) 25, 56, 97, 1005
HpaII CCGG 2 cut(s) 117, 367
HphI GGTGA 4 cut(s) 20, 648, 1180, 1454
Hpy166II GTNNAC 7 cut(s) 39, 286, 562, 724, 876, 1078, 1488
Hpy188I TCNGA 8 cut(s) 184, 403, 777, 852, 904, 1000, 1263, 1291
Hpy188III TCNNGA 5 cut(s) 74, 200, 674, 1249, 1346
Hpy8I GTNNAC 7 cut(s) 39, 286, 562, 724, 876, 1078, 1488
Hpy99I CGWCG 2 cut(s) 80, 1379
HpyAV CCTTC 3 cut(s) 180, 782, 934
HpyCH4III ACNGT 2 cut(s) 374, 689
HpyCH4IV ACGT 1 cut(s) 1074
HpyCH4V TGCA 6 cut(s) 499, 592, 634, 1039, 1097, 1121
HpyF10VI GCNNNNNNNGC 5 cut(s) 250, 297, 598, 799, 1233
HpyF3I CTNAG 4 cut(s) 234, 477, 503, 1290
HpySE526I ACGT 1 cut(s) 1074
HspAI GCGC 7 cut(s) 63, 154, 273, 300, 822, 824, 1419
Kzo9I GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
LmnI GCTCC 3 cut(s) 507, 538, 814
Lsp1109I GCAGC 4 cut(s) 168, 511, 604, 1081
LweI GCATC 4 cut(s) 486, 579, 1108, 1212
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 1074
MaeIII GTNAC 2 cut(s) 654, 1087
MalI GATC 8 cut(s) 107, 405, 580, 1002, 1158, 1260, 1281, 1479
MboI GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
MboII GAAGA 9 cut(s) 301, 304, 505, 692, 695, 1081, 1151, 1361, 1442
MflI RGATCY 2 cut(s) 1156, 1279
MhlI GDGCHC 1 cut(s) 867
MlsI TGGCCA 1 cut(s) 1045
MluCI AATT 8 cut(s) 80, 133, 178, 732, 829, 868, 898, 1052
MluNI TGGCCA 1 cut(s) 1045
MmeI TCCRAC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 1045
MscI TGGCCA 1 cut(s) 1045
MseI TTAA 4 cut(s) 987, 1130, 1209, 1492
MslI CAYNNNNRTG 4 cut(s) 172, 452, 960, 1029
Msp20I TGGCCA 1 cut(s) 1045
MspA1I CMGCKG 2 cut(s) 595, 1094
MspI CCGG 2 cut(s) 117, 367
MspR9I CCNGG 4 cut(s) 368, 980, 1305, 1383
Mva1269I GAATGC 3 cut(s) 487, 523, 1341
MvaI CCWGG 3 cut(s) 980, 1305, 1383
MvnI CGCG 2 cut(s) 824, 1419
MwoI GCNNNNNNNGC 5 cut(s) 250, 297, 598, 799, 1233
NciI CCSGG 1 cut(s) 368
NcoI CCATGG 1 cut(s) 51
NdeI CATATG 1 cut(s) 293
NdeII GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
NlaIV GGNNCC 3 cut(s) 121, 1281, 1407
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 654
NspI RCATGY 2 cut(s) 451, 457
OliI CACNNNNGTG 1 cut(s) 172
PaqCI CACCTGC 1 cut(s) 814
PauI GCGCGC 1 cut(s) 822
PceI AGGCCT 1 cut(s) 475
PciI ACATGT 2 cut(s) 447, 453
PctI GAATGC 3 cut(s) 487, 523, 1341
PfeI GAWTC 4 cut(s) 25, 56, 97, 1005
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 4 cut(s) 158, 501, 594, 1096
Ple19I CGATCG 1 cut(s) 1003
PscI ACATGT 2 cut(s) 447, 453
Psp6I CCWGG 3 cut(s) 978, 1303, 1381
PspEI GGTNACC 1 cut(s) 654
PspFI CCCAGC 2 cut(s) 879, 1421
PspGI CCWGG 3 cut(s) 978, 1303, 1381
PspN4I GGNNCC 3 cut(s) 121, 1281, 1407
PspPI GGNCC 7 cut(s) 10, 119, 215, 913, 1082, 1379, 1424
PstNI CAGNNNCTG 2 cut(s) 1289, 1388
PsuI RGATCY 2 cut(s) 1156, 1279
PteI GCGCGC 1 cut(s) 822
PvuI CGATCG 1 cut(s) 1003
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 4 cut(s) 172, 452, 960, 1029
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 4 cut(s) 987, 1130, 1209, 1492
SatI GCNGC 4 cut(s) 157, 500, 593, 1095
Sau3AI GATC 8 cut(s) 105, 403, 578, 1000, 1156, 1258, 1279, 1477
Sau96I GGNCC 7 cut(s) 10, 119, 215, 913, 1082, 1379, 1424
ScrFI CCNGG 4 cut(s) 368, 980, 1305, 1383
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 4 cut(s) 486, 579, 1108, 1212
SinI GGWCC 1 cut(s) 913
SmiMI CAYNNNNRTG 4 cut(s) 172, 452, 960, 1029
SmlI CTYRAG 4 cut(s) 407, 794, 1197, 1394
SmoI CTYRAG 4 cut(s) 407, 794, 1197, 1394
Sse9I AATT 8 cut(s) 80, 133, 178, 732, 829, 868, 898, 1052
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 6 cut(s) 333, 529, 595, 1328, 1339, 1417
SspMI CTAG 1 cut(s) 200
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 4 cut(s) 366, 978, 1303, 1381
StyI CCWWGG 5 cut(s) 51, 211, 255, 532, 1465
TaaI ACNGT 2 cut(s) 374, 689
TaiI ACGT 1 cut(s) 1077
TaqI TCGA 5 cut(s) 100, 561, 577, 789, 1003
TaqII GACCGA 2 cut(s) 642, 659
TasI AATT 8 cut(s) 80, 133, 178, 732, 829, 868, 898, 1052
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 4 cut(s) 25, 56, 97, 1005
Tru1I TTAA 4 cut(s) 987, 1130, 1209, 1492
Tru9I TTAA 4 cut(s) 987, 1130, 1209, 1492
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 4 cut(s) 156, 499, 592, 1094
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 6 cut(s) 110, 412, 530, 693, 1082, 1258
TspGWI ACGGA 4 cut(s) 280, 984, 1031, 1292
VpaK11BI GGWCC 1 cut(s) 913
XapI RAATTY 2 cut(s) 133, 178
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 2 cut(s) 451, 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmiI GTMKAC 4 cut(s) 285, 561, 875, 1077
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.