Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0024624

Physical Location & Seq

Genomic Coordinates Forward (+)

17352814 .. 17353802

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAGCCTGCTGCTCCAGATTCTCCTTCTGCTGGTTCCACTCCCACCTTAAACCCTCCGACCTCGAATCCTCCGAACTGGACAATGGGGGCAAAAGCGACAAAAGTATATGGCCGGCCTTCACGGAGTACAGCCTCGACCAACTGAAAGCCTCCACGTCCGGCTTCTCCTCCGACAACATCGTCTCCGAGCACGGAGAAAAAGCTCCGAACATTGTCTACAGGGGAAAGCTCGACAACGGCCGCTTAATCGCCGTCAAACGATTCAACAAGCTCGCCTGGCCCGACAATCGCCAATTCCTCGAGGAGGCGAGGTCGGTGGGGAGCCTGAGGAGCGAGAGGCTGGCGAATCTGATCGGATGCTGCTGCGAAGGGGAGGAGCGGCTGCTCGTGGCGGAGTTCATGGCGCACGAGACGCTGGCGAAGCACTTGTTCCACTGGGAGAGCCAACCGATGAGGTGGGCGATGAGGCTGAGGGTGGCGCTGTATCTTGCTCAGGCTCTCGACTATTGCAGCAGCAAAGGTCGAGCCTTGTACCATGATCGATCAATGCCTACAGGGTTTTGTTTGATCAGGATGGTAATCCCAGGCTGTCATGCTTTGGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

22.94

Weight (kDa)

8.08

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	73 - 174	1.2e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	73 - 175	4.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024624)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06460 pycom12g14870
rosa_samantha	Rh3DG134700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AbsI	CCTCGAGG	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	3 cut(s)	244, 382, 395
AcoI	YGGCCR	2 cut(s)	113, 241
AfaI	GTAC	2 cut(s)	131, 536
AfiI	CCNNNNNNNGG	2 cut(s)	33, 307
AgsI	TTSAA	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	278, 586
AluBI	AGCT	3 cut(s)	206, 232, 274
AluI	AGCT	3 cut(s)	206, 232, 274
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	190, 407
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	5 cut(s)	113, 117, 241, 281, 603
ApeKI	GCWGC	6 cut(s)	12, 363, 366, 385, 513, 516
AspLEI	GCGC	2 cut(s)	409, 484
AspS9I	GGNCC	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	329
BauI	CACGAG	2 cut(s)	389, 410
Bbv12I	GWGCWC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	473
BbvI	GCAGC	5 cut(s)	350, 353, 372, 525, 528
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	2 cut(s)	239, 256
BciT130I	CCWGG	2 cut(s)	280, 588
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	2 cut(s)	190, 407
BfmI	CTRYAG	2 cut(s)	220, 555
BfoI	RGCGCY	1 cut(s)	485
BisI	GCNGC	8 cut(s)	13, 244, 364, 367, 383, 386, 514, 517
BlsI	GCNGC	8 cut(s)	14, 245, 365, 368, 384, 387, 515, 518
Bme1390I	CCNGG	2 cut(s)	280, 588
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	7, 38, 326
BmrFI	CCNGG	2 cut(s)	280, 588
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	448
Bpu10I	CCTNAGC	2 cut(s)	473, 495
Bsa29I	ATCGAT	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	586
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 307
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	84, 443
Bse21I	CCTNAGG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	280, 588
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	365, 582
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	2 cut(s)	33, 307
BseMII	CTCAG	3 cut(s)	320, 464, 509
BseNI	ACTGG	2 cut(s)	84, 443
BseRI	GAGGAG	4 cut(s)	160, 320, 346, 392
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	350, 353, 372, 525, 528
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	5 cut(s)	115, 119, 243, 283, 605
BshVI	ATCGAT	1 cut(s)	544
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	116, 162
BslI	CCNNNNNNNGG	2 cut(s)	33, 307
BsmAI	GTCTC	2 cut(s)	190, 407
BsmBI	CGTCTC	2 cut(s)	190, 407
BsnI	GGCC	5 cut(s)	115, 119, 243, 283, 605
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	354, 541, 545, 570
BspACI	CCGC	3 cut(s)	244, 382, 395
BspANI	GGCC	5 cut(s)	115, 119, 243, 283, 605
BspCNI	CTCAG	3 cut(s)	321, 465, 508
BspDI	ATCGAT	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	608
BspLI	GGNNCC	3 cut(s)	7, 38, 326
BsrBI	CCGCTC	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	2 cut(s)	84, 443
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	4 cut(s)	354, 541, 545, 570
BssSI	CACGAG	2 cut(s)	389, 410
Bst2BI	CACGAG	2 cut(s)	389, 410
Bst2UI	CCWGG	2 cut(s)	280, 588
BstC8I	GCNNGC	5 cut(s)	10, 117, 276, 345, 420
BstDEI	CTNAG	3 cut(s)	329, 473, 495
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	365, 582
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	409, 484
BstKTI	GATC	4 cut(s)	357, 544, 548, 573
BstMAI	GTCTC	2 cut(s)	190, 407
BstMBI	GATC	4 cut(s)	354, 541, 545, 570
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 333, 415, 424
BstNI	CCWGG	2 cut(s)	280, 588
BstSCI	CCNGG	2 cut(s)	278, 586
BstSFI	CTRYAG	2 cut(s)	220, 555
BstV1I	GCAGC	5 cut(s)	350, 353, 372, 525, 528
BstZI	CGGCCG	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	544
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	5 cut(s)	115, 119, 243, 283, 605
BsuTUI	ATCGAT	1 cut(s)	544
BtgZI	GCGATG	1 cut(s)	479
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	365, 582
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	5 cut(s)	10, 117, 276, 345, 420
CciI	TCATGA	1 cut(s)	608
CfoI	GCGC	2 cut(s)	409, 484
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	544
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	130, 535
CviAII	CATG	4 cut(s)	403, 539, 596, 609
CviQI	GTAC	2 cut(s)	130, 535
DdeI	CTNAG	3 cut(s)	329, 473, 495
DpnI	GATC	4 cut(s)	356, 543, 547, 572
DpnII	GATC	4 cut(s)	354, 541, 545, 570
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	2 cut(s)	113, 241
EagI	CGGCCG	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	410
EclXI	CGGCCG	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	278, 586
Esp3I	CGTCTC	2 cut(s)	190, 407
FaeI	CATG	4 cut(s)	406, 542, 599, 612
FaiI	YATR	6 cut(s)	110, 112, 404, 540, 597, 610
FatI	CATG	4 cut(s)	402, 538, 595, 608
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	13, 244, 364, 367, 383, 386, 514, 517
FokI	GGATG	2 cut(s)	372, 589
FseI	GGCCGGCC	1 cut(s)	119
Fsp4HI	GCNGC	8 cut(s)	13, 244, 364, 367, 383, 386, 514, 517
GlaI	GCGC	2 cut(s)	408, 483
GluI	GCNGC	8 cut(s)	13, 244, 364, 367, 383, 386, 514, 517
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	5 cut(s)	115, 119, 243, 283, 605
HapII	CCGG	2 cut(s)	116, 162
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	2 cut(s)	409, 484
Hin1II	CATG	4 cut(s)	406, 542, 599, 612
Hin6I	GCGC	2 cut(s)	407, 482
HinP1I	GCGC	2 cut(s)	407, 482
HinfI	GANTC	4 cut(s)	21, 68, 264, 349
HpaII	CCGG	2 cut(s)	116, 162
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	7 cut(s)	61, 76, 175, 190, 210, 354, 359
Hpy188III	TCNNGA	4 cut(s)	18, 503, 574, 609
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	37, 130, 365
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 333, 415, 424
HpyF3I	CTNAG	3 cut(s)	329, 473, 495
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	406, 542, 599, 612
HspAI	GCGC	2 cut(s)	407, 482
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	354, 541, 545, 570
LmnI	GCTCC	6 cut(s)	5, 20, 211, 324, 333, 379
Lsp1109I	GCAGC	5 cut(s)	350, 353, 372, 525, 528
LweI	GCATC	1 cut(s)	350
MaeII	ACGT	1 cut(s)	158
MalI	GATC	4 cut(s)	356, 543, 547, 572
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	4 cut(s)	354, 541, 545, 570
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	84, 198
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	2 cut(s)	51, 248
MspI	CCGG	2 cut(s)	116, 162
MspR9I	CCNGG	2 cut(s)	280, 588
MvaI	CCWGG	2 cut(s)	280, 588
MwoI	GCNNNNNNNGC	4 cut(s)	280, 333, 415, 424
NaeI	GCCGGC	1 cut(s)	117
NdeII	GATC	4 cut(s)	354, 541, 545, 570
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	406, 542, 599, 612
NlaIV	GGNNCC	3 cut(s)	7, 38, 326
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 282
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	21, 68, 264, 349
PkrI	GCNGC	8 cut(s)	14, 245, 365, 368, 384, 387, 515, 518
Psp6I	CCWGG	2 cut(s)	278, 586
PspGI	CCWGG	2 cut(s)	278, 586
PspN4I	GGNNCC	3 cut(s)	7, 38, 326
PspPI	GGNCC	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	302
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
RigI	GGCCGGCC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	131, 536
RsaNI	GTAC	2 cut(s)	130, 535
SaqAI	TTAA	2 cut(s)	51, 248
SatI	GCNGC	8 cut(s)	13, 244, 364, 367, 383, 386, 514, 517
Sau3AI	GATC	4 cut(s)	354, 541, 545, 570
Sau96I	GGNCC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	280, 588
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	9 cut(s)	51, 66, 161, 208, 234, 276, 317, 461, 526
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	2 cut(s)	220, 555
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	244, 382, 395
StyD4I	CCNGG	2 cut(s)	278, 586
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	7 cut(s)	66, 138, 234, 303, 504, 526, 544
TasI	AATT	1 cut(s)	296
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	2 cut(s)	246, 385
TfiI	GAWTC	4 cut(s)	21, 68, 264, 349
Tru1I	TTAA	2 cut(s)	51, 248
Tru9I	TTAA	2 cut(s)	51, 248
TscAI	CASTG	1 cut(s)	443
TseI	GCWGC	6 cut(s)	12, 363, 366, 385, 513, 516
TspDTI	ATGAA	1 cut(s)	391
TspGWI	ACGGA	2 cut(s)	140, 210
TspRI	CASTG	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.