Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0022559

Physical Location & Seq

Genomic Coordinates Forward (+)

18013209 .. 18014727

Gene Structure 1519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTGTGTTCGTCGAACCAGAATCGGAGCATGGAGGCTCACTCACTCCTCAAGCGGCAGGGCTTCGACGTCGCGTCGTACGGCACCGGAGCCCACGTCAAGCTCCCTGGTCCCTCCCTCAGAGAACCCAATGTTTACGACTTTGGCACACCTTACAAGCAGATGTTCGACGATCTCCGGCGAAAAGACCCCGAACTGTACAAGCGTAATGGCATCTTGCCTATGCTTAAAAGAAACTTGGGAGTCAAACTGGCACCTCAGCGATGGCAGGACAATGCTGCCGACGGTTCCTTTGATGTGGTGTTAACATTCGAAGAAAAGGTTTTTGACATGGTTATTGAAGCTCAACAACCGGGACCATGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006464 GO:0006470 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0031123 GO:0031124 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Ssu72

Protein Analysis

123

Amino Acids

13.79

Weight (kDa)

7.77

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssu72	PF04722	1 - 115	1e-53	Ssu72-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022559)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15580
rosa_samantha	Rh7AG009800 Rh7BG009900 Rh7CG010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccB1I	GGYRCC	2 cut(s)	83, 253
AccII	CGCG	1 cut(s)	74
AciI	CCGC	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	80, 200
AgsI	TTSAA	1 cut(s)	341
AhdI	GACNNNNNGTC	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	2 cut(s)	103, 344
AluI	AGCT	2 cut(s)	103, 344
ApeKI	GCWGC	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspS9I	GGNCC	2 cut(s)	110, 356
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	312
AvaII	GGWCC	2 cut(s)	110, 356
BanI	GGYRCC	2 cut(s)	83, 253
BanII	GRGCYC	1 cut(s)	94
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	354
BisI	GCNGC	2 cut(s)	56, 279
BlsI	GCNGC	2 cut(s)	57, 280
Bme1390I	CCNGG	2 cut(s)	108, 354
Bme18I	GGWCC	2 cut(s)	110, 356
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	110, 356
BmiI	GGNNCC	6 cut(s)	85, 91, 112, 255, 289, 357
BmrFI	CCNGG	2 cut(s)	108, 354
BmsI	GCATC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	133, 272
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	74
BshNI	GGYRCC	2 cut(s)	83, 253
BsiSI	CCGG	3 cut(s)	87, 178, 353
BsiWI	CGTACG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	132, 271
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	6 cut(s)	85, 91, 112, 255, 289, 357
BspT104I	TTCGAA	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	83, 253
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	198, 287
BstACI	GRCGYC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	312
BstDEI	CTNAG	3 cut(s)	119, 258, 366
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	106, 352
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	265
BtgZI	GCGATG	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	110, 356
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	79, 199
CviAII	CATG	3 cut(s)	31, 331, 360
CviJI	RGCY	5 cut(s)	38, 63, 92, 103, 344
CviKI_1	RGCY	5 cut(s)	38, 63, 92, 103, 344
CviQI	GTAC	2 cut(s)	79, 199
DdeI	CTNAG	3 cut(s)	119, 258, 366
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	110, 356
EcoRII	CCWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	3 cut(s)	34, 334, 363
FaiI	YATR	4 cut(s)	32, 224, 332, 361
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	3 cut(s)	30, 330, 359
Fnu4HI	GCNGC	2 cut(s)	56, 279
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	56, 279
GluI	GCNGC	2 cut(s)	56, 279
HapII	CCGG	3 cut(s)	87, 178, 353
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	34, 334, 363
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	2 cut(s)	22, 243
HpaI	GTTAAC	1 cut(s)	306
HpaII	CCGG	3 cut(s)	87, 178, 353
Hpy166II	GTNNAC	2 cut(s)	136, 306
Hpy188I	TCNGA	2 cut(s)	27, 122
Hpy8I	GTNNAC	2 cut(s)	136, 306
Hpy99I	CGWCG	6 cut(s)	16, 71, 74, 79, 173, 287
HpyCH4III	ACNGT	2 cut(s)	198, 287
HpyCH4IV	ACGT	2 cut(s)	69, 96
HpyF3I	CTNAG	3 cut(s)	119, 258, 366
HpySE526I	ACGT	2 cut(s)	69, 96
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	34, 334, 363
KspAI	GTTAAC	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	3 cut(s)	27, 89, 108
LpnPI	CCDG	8 cut(s)	32, 44, 93, 100, 120, 191, 236, 254
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	2 cut(s)	69, 96
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	28, 59, 124, 128, 267
MseI	TTAA	2 cut(s)	228, 305
MspI	CCGG	3 cut(s)	87, 178, 353
MspR9I	CCNGG	2 cut(s)	108, 354
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	74
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	34, 334, 363
NlaIV	GGNNCC	6 cut(s)	85, 91, 112, 255, 289, 357
NspV	TTCGAA	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	22
Pfl23II	CGTACG	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	57, 280
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspLI	CGTACG	1 cut(s)	78
PspN4I	GGNNCC	6 cut(s)	85, 91, 112, 255, 289, 357
PspPI	GGNCC	2 cut(s)	110, 356
RsaI	GTAC	2 cut(s)	80, 200
RsaNI	GTAC	2 cut(s)	79, 199
SaqAI	TTAA	2 cut(s)	228, 305
SatI	GCNGC	2 cut(s)	56, 279
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	110, 356
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	108, 354
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	7 cut(s)	72, 99, 105, 154, 259, 324, 346
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	312
SinI	GGWCC	2 cut(s)	110, 356
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	106, 352
TaaI	ACNGT	2 cut(s)	198, 287
TaiI	ACGT	2 cut(s)	72, 99
TaqI	TCGA	4 cut(s)	14, 66, 168, 312
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	228, 305
Tru9I	TTAA	2 cut(s)	228, 305
TseI	GCWGC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	110, 356
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.