Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0022559

Physical Location & Seq

Genomic Coordinates Forward (+)

638326 .. 641287

Gene Structure 2962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG009900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAGTTCCGGTACGCCATGGTGTGCTCGTCCAACCAGAACCGGAGCATGGAGGCTCACGCGCTCCTCAAGCGTCAAGGCTTCGACGTCTCGTCGTACGGCACTGGATCCCACGTTAAGCTCCCTGGACCTTCCCTCAGAGAACCCAACGTTTACGAGTTTGGAACTCCTTACAAGCAGATGTTAGACGAGCTCAGACGAAAAGACCCAGAATTGTACAAGCGGAATGGCATTTTGCCTATGCTTAAGAGAAACGCGGCAGTTAAACTGGCACCTCAGCGGTGGCAAGACAATGCTGCTGATGGTTTCTTTGACGTGGTATTTACTTTCGAAGAAAAGGTTTTTGATATGGTTGTTGAAGGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006464 GO:0006470 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0031123 GO:0031124 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Ssu72

Protein Analysis

122

Amino Acids

14.13

Weight (kDa)

9.07

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssu72	PF04722	4 - 120	1.5e-55	Ssu72-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022559)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g15580
rosa_samantha	Rh7AG009800 Rh7BG009900 Rh7CG010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	2 cut(s)	62, 257
AciI	CCGC	3 cut(s)	223, 257, 280
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	2 cut(s)	102, 115
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	3 cut(s)	14, 98, 218
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	359
AhdI	GACNNNNNGTC	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	121, 193
AluI	AGCT	2 cut(s)	121, 193
Alw21I	GWGCWC	2 cut(s)	29, 195
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	102, 115
ApeKI	GCWGC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	29, 195
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	258, 297
BlsI	GCNGC	2 cut(s)	259, 298
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	109, 273
BmrFI	CCNGG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	18, 124
BsaWI	WCCGGW	2 cut(s)	9, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	109, 273
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	18, 124
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	151, 208, 290
BseNI	ACTGG	2 cut(s)	109, 273
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	283
Bsh1236I	CGCG	2 cut(s)	62, 257
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	29, 195
BsiSI	CCGG	2 cut(s)	10, 43
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	29, 195
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	3 cut(s)	223, 257, 280
BspCNI	CTCAG	3 cut(s)	150, 207, 289
BspFNI	CGCG	2 cut(s)	62, 257
BspLI	GGNNCC	2 cut(s)	109, 273
BspPI	GGATC	2 cut(s)	102, 115
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	109, 273
BssECI	CCNNGG	2 cut(s)	18, 124
BssMI	GATC	1 cut(s)	107
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	137, 194, 276
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	2 cut(s)	62, 257
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	2 cut(s)	62, 257
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	13, 97, 217
CviAII	CATG	2 cut(s)	19, 49
CviJI	RGCY	4 cut(s)	56, 81, 121, 193
CviKI_1	RGCY	4 cut(s)	56, 81, 121, 193
CviQI	GTAC	3 cut(s)	13, 97, 217
DdeI	CTNAG	3 cut(s)	137, 194, 276
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	2 cut(s)	22, 52
FaiI	YATR	4 cut(s)	20, 50, 242, 350
FatI	CATG	2 cut(s)	18, 48
Fnu4HI	GCNGC	2 cut(s)	258, 297
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	258, 297
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	258, 297
HapII	CCGG	2 cut(s)	10, 43
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	22, 52
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	10, 43
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	140, 197
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	89, 97
HpyAV	CCTTC	2 cut(s)	141, 353
HpyCH4IV	ACGT	4 cut(s)	87, 114, 150, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	3 cut(s)	137, 194, 276
HpySE526I	ACGT	4 cut(s)	87, 114, 150, 315
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	22, 52
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	45, 69, 126
LpnPI	CCDG	8 cut(s)	23, 50, 56, 90, 111, 138, 222, 254
Lsp1109I	GCAGC	1 cut(s)	283
MaeII	ACGT	4 cut(s)	87, 114, 150, 315
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	1 cut(s)	344
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	29, 195
MluCI	AATT	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	46, 77, 146, 285
MseI	TTAA	3 cut(s)	117, 246, 264
MspA1I	CMGCKG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	10, 43
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	62, 257
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	22, 52
NlaIV	GGNNCC	2 cut(s)	109, 273
NspV	TTCGAA	1 cut(s)	330
Pfl23II	CGTACG	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	259, 298
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	109, 273
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	3 cut(s)	14, 98, 218
RsaNI	GTAC	3 cut(s)	13, 97, 217
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	117, 246, 264
SatI	GCNGC	2 cut(s)	258, 297
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	29, 195
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	68, 245
SmoI	CTYRAG	2 cut(s)	68, 245
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	3 cut(s)	223, 257, 280
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	4 cut(s)	90, 117, 153, 318
TaqI	TCGA	2 cut(s)	84, 330
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	117, 246, 264
Tru9I	TTAA	3 cut(s)	117, 246, 264
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.