pycom12g16630

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0024425
Physical Location & Seq
Reverse (-)
18972998 .. 18973309
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGCCATTATGTTGTAATTTTGCAGCCACAAGGTGCTTTGGAAGGAGGCCAGACCAGTTCCCTCCGCGTTACCTTTTTGCGGCCGTGAGTCCAGGGTTGTGGGACGGTGGTTCTGCGTGCGGAAGGGTCTATAAAATCAAGTGCCTGAGTGGACCTAATATGCCCTGCAAGTTTGGTGAGACTGTCGAGGTCAAGGTGGTGGACCTTTGCCGGAAATCTCCTTGCCCTTCTGCCATAGCCATGTCAACCGATGCTTTTGCAGCCATTTCACACTCTACTTCTGCACCAATCAACATCGAATATGTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

104

Amino Acids

11.12

Weight (kDa)

8.47

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 27 - 101 2.3e-09 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024425)

Species Orthologous Gene IDs
malus_domestica MD12G1175200.v1.1 MD12G1175900.v1.1
pyrus_communis pycom12g16630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 65, 80, 120
AcoI YGGCCR 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 79
AjnI CCWGG 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 2 cut(s) 47, 81
ApeKI GCWGC 2 cut(s) 23, 260
AspS9I GGNCC 2 cut(s) 152, 202
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 2 cut(s) 152, 202
BbvI GCAGC 2 cut(s) 35, 272
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 173
BisI GCNGC 3 cut(s) 24, 81, 261
BlsI GCNGC 3 cut(s) 25, 82, 262
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 2 cut(s) 152, 202
BmgT120I GGNCC 2 cut(s) 152, 202
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 55
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 35, 272
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 49, 83
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 49, 83
BspACI CCGC 3 cut(s) 65, 80, 120
BspANI GGCC 2 cut(s) 49, 83
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 107, 184
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 146
BstFNI CGCG 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 173
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 35, 272
BstXI CCANNNNNNTGG 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 49, 83
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 152, 202
CviAII CATG 1 cut(s) 241
CviJI RGCY 5 cut(s) 26, 49, 83, 239, 263
CviKI_1 RGCY 5 cut(s) 26, 49, 83, 239, 263
DdeI CTNAG 1 cut(s) 146
DraIII CACNNNGTG 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 152, 202
Eco52I CGGCCG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 1 cut(s) 244
FaiI YATR 6 cut(s) 10, 132, 161, 236, 242, 303
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 24, 81, 261
Fsp4HI GCNGC 3 cut(s) 24, 81, 261
GluI GCNGC 3 cut(s) 24, 81, 261
HaeIII GGCC 2 cut(s) 49, 83
HapII CCGG 1 cut(s) 211
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 3 cut(s) 152, 202, 246
Hpy8I GTNNAC 3 cut(s) 152, 202, 246
HpyAV CCTTC 3 cut(s) 36, 117, 237
HpyCH4III ACNGT 2 cut(s) 107, 184
HpyCH4V TGCA 4 cut(s) 23, 168, 260, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 244
LpnPI CCDG 7 cut(s) 63, 68, 78, 105, 158, 178, 224
Lsp1109I GCAGC 2 cut(s) 35, 272
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 68
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 3 cut(s) 39, 72, 181
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PkrI GCNGC 3 cut(s) 25, 82, 262
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspPI GGNCC 2 cut(s) 152, 202
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 3 cut(s) 24, 81, 261
Sau96I GGNCC 2 cut(s) 152, 202
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 93
SetI ASST 6 cut(s) 35, 75, 157, 192, 198, 207
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 2 cut(s) 152, 202
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 1 cut(s) 16
SsiI CCGC 3 cut(s) 65, 80, 120
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 107, 184
TaqI TCGA 3 cut(s) 186, 297, 306
TasI AATT 1 cut(s) 16
TauI GCSGC 1 cut(s) 83
TseI GCWGC 2 cut(s) 23, 260
VpaK11BI GGWCC 2 cut(s) 152, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.