pycom13g01070

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0029434
Physical Location & Seq
Reverse (-)
709982 .. 710460
479 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01070.2

Sequence Viewer

Length: 423 bp
ATGTGGTTCAGGGATCCATTTCCACAGTTTTATGAGGATGCAGATTTTCAGATTGCATGCGATCATTTCTTTGGCACGTTCTACAAATTTCGGTATTTCTCACGGGAAACCTACCCTGGGTTCCATGATCAAGATGTCCTCAATATTATCAAGTTTTATCCAACCACCGTTAGTATCGGACTGAAAATAAAATTTTTGGATACGGCTTACTTTGGTGGATTTTGTGAACCTAGTAAAGATTTGAATCAAGTTTGTACAATGCATGCAAATTATTGTAAAGGTCTAGGTAGCAAGCTTCATGCCCTTAGAATCCTGGTTCAGAATTGGAAGCGATCTGTGTCCTTGCCGCCAAATTTGAAGAGATATTTGATGGGTTGTCCCGCACAACTGCAGGTAAGACGCTTCAATTACTATGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

141

Amino Acids

16.62

Weight (kDa)

9.1

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029434)

Species Orthologous Gene IDs
pyrus_communis pycom13g01070
rosa_multiflora Rmu_co8314637.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AciI CCGC 2 cut(s) 347, 381
AclWI GGATC 2 cut(s) 8, 21
AcsI RAATTY 3 cut(s) 86, 191, 352
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 244, 358, 406
AjnI CCWGG 2 cut(s) 115, 312
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
AlwI GGATC 2 cut(s) 8, 21
ApoI RAATTY 3 cut(s) 86, 191, 352
BamHI GGATCC 1 cut(s) 13
BccI CCATC 1 cut(s) 364
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 117, 314
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 1 cut(s) 127
BfaI CTAG 2 cut(s) 231, 284
BfmI CTRYAG 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 382
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 117, 314
BmiI GGNNCC 2 cut(s) 15, 122
BmrFI CCNGG 2 cut(s) 117, 314
BmsI GCATC 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 115, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 2 cut(s) 117, 314
BseDI CCNNGG 2 cut(s) 115, 116
BseGI GGATG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 254
Bsp143I GATC 4 cut(s) 13, 61, 127, 332
BspACI CCGC 2 cut(s) 347, 381
BspLI GGNNCC 2 cut(s) 15, 122
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 2 cut(s) 8, 21
BsrGI TGTACA 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 115, 116
BssMI GATC 4 cut(s) 13, 61, 127, 332
Bst2UI CCWGG 2 cut(s) 117, 314
Bst4CI ACNGT 2 cut(s) 27, 169
Bst6I CTCTTC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 58, 264, 293
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 4 cut(s) 16, 64, 130, 335
BstMBI GATC 4 cut(s) 13, 61, 127, 332
BstNI CCWGG 2 cut(s) 117, 314
BstNSI RCATGY 2 cut(s) 60, 266
BstSCI CCNGG 2 cut(s) 115, 312
BstSFI CTRYAG 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuI GTATCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 43
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 58, 264, 293
CseI GACGC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 255
CviAII CATG 4 cut(s) 57, 125, 263, 299
CviJI RGCY 2 cut(s) 206, 295
CviKI_1 RGCY 2 cut(s) 206, 295
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 305
DpnI GATC 4 cut(s) 15, 63, 129, 334
DpnII GATC 4 cut(s) 13, 61, 127, 332
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 115, 312
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 4 cut(s) 60, 128, 266, 302
FaiI YATR 6 cut(s) 33, 58, 126, 264, 300, 414
FaqI GGGAC 1 cut(s) 363
FatI CATG 4 cut(s) 56, 124, 262, 298
FauI CCCGC 1 cut(s) 388
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 2 cut(s) 231, 284
GluI GCNGC 1 cut(s) 347
HgaI GACGC 1 cut(s) 408
Hin1II CATG 4 cut(s) 60, 128, 266, 302
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 244, 309
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 51, 179, 321
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 27, 169
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 5 cut(s) 41, 56, 262, 266, 391
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 4 cut(s) 60, 128, 266, 302
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 4 cut(s) 13, 61, 127, 332
LpnPI CCDG 5 cut(s) 102, 129, 299, 326, 377
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 231, 284
MaeII ACGT 1 cut(s) 77
MalI GATC 4 cut(s) 15, 63, 129, 334
MboI GATC 4 cut(s) 13, 61, 127, 332
MboII GAAGA 1 cut(s) 370
MflI RGATCY 1 cut(s) 13
MluCI AATT 6 cut(s) 86, 191, 268, 322, 352, 406
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 2 cut(s) 28, 149
Mph1103I ATGCAT 1 cut(s) 264
MspR9I CCNGG 2 cut(s) 117, 314
MvaI CCWGG 2 cut(s) 117, 314
NdeII GATC 4 cut(s) 13, 61, 127, 332
NlaIII CATG 4 cut(s) 60, 128, 266, 302
NlaIV GGNNCC 2 cut(s) 15, 122
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 60, 266
PaeI GCATGC 2 cut(s) 60, 266
PasI CCCWGGG 1 cut(s) 116
PfeI GAWTC 2 cut(s) 244, 309
PkrI GCNGC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 115, 312
PspGI CCWGG 2 cut(s) 115, 312
PspN4I GGNNCC 2 cut(s) 15, 122
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 4 cut(s) 13, 61, 127, 332
ScrFI CCNGG 2 cut(s) 117, 314
SetI ASST 7 cut(s) 80, 113, 232, 283, 289, 297, 396
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 389
SphI GCATGC 2 cut(s) 60, 266
Sse9I AATT 6 cut(s) 86, 191, 268, 322, 352, 406
SsiI CCGC 2 cut(s) 347, 381
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 231, 284
StyD4I CCNGG 2 cut(s) 115, 312
TaaI ACNGT 2 cut(s) 27, 169
TaiI ACGT 1 cut(s) 80
TasI AATT 6 cut(s) 86, 191, 268, 322, 352, 406
TatI WGTACW 1 cut(s) 254
TauI GCSGC 1 cut(s) 349
TfiI GAWTC 2 cut(s) 244, 309
TspDTI ATGAA 1 cut(s) 287
XapI RAATTY 3 cut(s) 86, 191, 352
XceI RCATGY 2 cut(s) 60, 266
XspI CTAG 2 cut(s) 231, 284
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.