Rmu_co8314637.1_g000001

Nucleotide-diphospho-sugar transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314637.1
OG0029434
Physical Location & Seq
Forward (+)
176 .. 691
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314637.1_g000001.1.cds

Sequence Viewer

Length: 516 bp
atgccttcgtggtcggtctttctcctccaggatgctgatgttatgtggttcaggaatccttttccgcggttttattcggatgcagattttcagattgcttgcgatcatttcttaggcagctccgatgatttgcagaacagacctaatggagggttcaactatgtgaagtccaataaccggtcaatagagttctacaaatattggtattcttctcgtgaaacctaccctggataccatgatcaggatgttctcaatatgatcaagtttgatccctccactgttaatattggactgaaaatgaaatttctggacactgcttattttggtggattttgtgaacctagtagagatttgaatcaagtttgcacgatgcatgcaaattgttgttttggtctagatagcaagctgcatgaccttagaattatggttcaggactggaaggagtttctgtccttgccaccaagtttgaagagaactttgatatttccatgggcggttccgcagaattgcaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

171

Amino Acids

20.09

Weight (kDa)

6.04

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029434)

Species Orthologous Gene IDs
pyrus_communis pycom13g01070
rosa_multiflora Rmu_co8314637.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 501
AccII CGCG 1 cut(s) 67
AciI CCGC 4 cut(s) 65, 67, 494, 500
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 149, 177, 241
AgeI ACCGGT 1 cut(s) 177
AgsI TTSAA 3 cut(s) 157, 355, 469
AjnI CCWGG 2 cut(s) 27, 226
AluBI AGCT 2 cut(s) 120, 406
AluI AGCT 2 cut(s) 120, 406
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 117, 406
ApoI RAATTY 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 177
BauI CACGAG 1 cut(s) 213
BbvI GCAGC 2 cut(s) 129, 393
BciT130I CCWGG 2 cut(s) 29, 228
BciVI GTATCC 1 cut(s) 224
BclI TGATCA 2 cut(s) 238, 258
BfaI CTAG 2 cut(s) 342, 395
BfuAI ACCTGC 1 cut(s) 501
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 2 cut(s) 118, 407
BlsI GCNGC 2 cut(s) 119, 408
Bme1390I CCNGG 2 cut(s) 29, 228
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 2 cut(s) 29, 228
BmsI GCATC 3 cut(s) 22, 70, 360
BpmI CTGGAG 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 65, 226, 488
BsaWI WCCGGW 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 177, 241
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 2 cut(s) 29, 228
BseDI CCNNGG 3 cut(s) 65, 226, 488
BseGI GGATG 3 cut(s) 37, 85, 250
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 3 cut(s) 149, 177, 241
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 129, 393
Bsh1236I CGCG 1 cut(s) 67
BshTI ACCGGT 1 cut(s) 177
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 3 cut(s) 149, 177, 241
Bsp143I GATC 4 cut(s) 103, 238, 258, 268
Bsp19I CCATGG 1 cut(s) 488
BspACI CCGC 4 cut(s) 65, 67, 494, 500
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 498
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 3 cut(s) 65, 226, 488
BssMI GATC 4 cut(s) 103, 238, 258, 268
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 29, 228
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 464
BstC8I GCNNGC 3 cut(s) 100, 375, 404
BstDEI CTNAG 2 cut(s) 112, 416
BstDSI CCRYGG 2 cut(s) 65, 488
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 37, 85, 250
BstFNI CGCG 1 cut(s) 67
BstKTI GATC 4 cut(s) 106, 241, 261, 271
BstMBI GATC 4 cut(s) 103, 238, 258, 268
BstNI CCWGG 2 cut(s) 29, 228
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 27, 226
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 129, 393
BsuI GTATCC 1 cut(s) 224
BtgI CCRYGG 2 cut(s) 65, 488
BtsCI GGATG 3 cut(s) 37, 85, 250
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 276, 312
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 3 cut(s) 100, 375, 404
Cfr10I RCCGGY 1 cut(s) 177
Cfr42I CCGCGG 1 cut(s) 68
CspAI ACCGGT 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 4 cut(s) 236, 374, 410, 489
CviJI RGCY 2 cut(s) 120, 406
CviKI_1 RGCY 2 cut(s) 120, 406
DdeI CTNAG 2 cut(s) 112, 416
DpnI GATC 4 cut(s) 105, 240, 260, 270
DpnII GATC 4 cut(s) 103, 238, 258, 268
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 488
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 27, 226
EcoT14I CCWWGG 1 cut(s) 488
EcoT22I ATGCAT 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 4 cut(s) 239, 377, 413, 492
FaiI YATR 8 cut(s) 44, 162, 237, 257, 375, 411, 425, 490
FatI CATG 4 cut(s) 235, 373, 409, 488
FbaI TGATCA 2 cut(s) 238, 258
Fnu4HI GCNGC 2 cut(s) 118, 407
FokI GGATG 3 cut(s) 44, 92, 257
Fsp4HI GCNGC 2 cut(s) 118, 407
FspBI CTAG 2 cut(s) 342, 395
GluI GCNGC 2 cut(s) 118, 407
GsuI CTGGAG 1 cut(s) 11
HapII CCGG 1 cut(s) 178
Hin1II CATG 4 cut(s) 239, 377, 413, 492
HinfI GANTC 2 cut(s) 55, 355
HpaII CCGG 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 3 cut(s) 79, 93, 124
Hpy188III TCNNGA 6 cut(s) 52, 215, 242, 308, 395, 431
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 15, 433
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 7 cut(s) 83, 133, 366, 373, 377, 409, 510
HpyF3I CTNAG 2 cut(s) 112, 416
Hsp92II CATG 4 cut(s) 239, 377, 413, 492
Ksp22I TGATCA 2 cut(s) 238, 258
KspI CCGCGG 1 cut(s) 68
Kzo9I GATC 4 cut(s) 103, 238, 258, 268
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 2 cut(s) 129, 393
LweI GCATC 3 cut(s) 22, 70, 360
MaeI CTAG 2 cut(s) 342, 395
MalI GATC 4 cut(s) 105, 240, 260, 270
MboI GATC 4 cut(s) 103, 238, 258, 268
MboII GAAGA 2 cut(s) 201, 481
MluCI AATT 4 cut(s) 302, 379, 420, 505
MnlI CCTC 3 cut(s) 35, 143, 283
Mph1103I ATGCAT 1 cut(s) 375
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 29, 228
MvaI CCWGG 2 cut(s) 29, 228
MvnI CGCG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 488
NdeII GATC 4 cut(s) 103, 238, 258, 268
NlaIII CATG 4 cut(s) 239, 377, 413, 492
NlaIV GGNNCC 1 cut(s) 498
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 377
PaeI GCATGC 1 cut(s) 377
PfeI GAWTC 2 cut(s) 55, 355
PfoI TCCNGGA 1 cut(s) 27
PinAI ACCGGT 1 cut(s) 177
PkrI GCNGC 2 cut(s) 119, 408
Psp6I CCWGG 2 cut(s) 27, 226
PspGI CCWGG 2 cut(s) 27, 226
PspN4I GGNNCC 1 cut(s) 498
SacII CCGCGG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 118, 407
Sau3AI GATC 4 cut(s) 103, 238, 258, 268
ScrFI CCNGG 2 cut(s) 29, 228
SetI ASST 7 cut(s) 122, 145, 224, 343, 408, 417, 515
SfaNI GCATC 3 cut(s) 22, 70, 360
Sfr303I CCGCGG 1 cut(s) 68
SgrBI CCGCGG 1 cut(s) 68
SphI GCATGC 1 cut(s) 377
Sse9I AATT 4 cut(s) 302, 379, 420, 505
SsiI CCGC 4 cut(s) 65, 67, 494, 500
SspI AATATT 2 cut(s) 200, 286
SspMI CTAG 2 cut(s) 342, 395
StyD4I CCNGG 2 cut(s) 27, 226
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 280
TaqII GACCGA 1 cut(s) 4
TasI AATT 4 cut(s) 302, 379, 420, 505
TfiI GAWTC 2 cut(s) 55, 355
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 283, 319
TseI GCWGC 2 cut(s) 117, 406
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 283, 319
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 394
XceI RCATGY 1 cut(s) 377
XspI CTAG 2 cut(s) 342, 395
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.