Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029435

Physical Location & Seq

Genomic Coordinates Forward (+)

755761 .. 756808

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTGGCCTCTGCTCTCGCAGGTTATGGTGTTGCATGCAGGTACGAGATGCCGGAGAATTCTATGAGTGAAAAGGTGGCGGCCCAGATGATAAAGGACGAGCTGAAGCAGGATGCGGACCCAGGGATGAACTTGGCCTCGTTTGTGACAACATCGATGGACAAGAAGGCTAAAGAGCTTATCATGGAATGCCTCGACAAGAACTATGTTGACATGGATGAGTACCCTGCTACCACTGATGCTACACTACCTCGCAATGGTGGTGAAAGAAGGGGTAGAAAAACCGGGCGGTTTAAGATATTGTCAAGGGACATTGGGGTTCTGGTGGTGGCGTTTTCTCTCAAGGACAGAAGCCGTTACAATGAGTTTAAGGTGTCCGAGGGTTTGAGGCGTCACCAATTTATTGTGCCTGCATATCACATGTCAGCGGATGCTAAGCATGTGGCCTTGCTCCGCGTTGTCATAAGGGGATACTTCTCTCGCACTAAGACTGAGGGCCTTCTGTCCTGCATCAACGCCGTGCTTAAAGAGCTCGATGAGCTGCATCCAGTTGCTGCCATTCAAGAAAATGGTCATCATAAACTGTCTCTAAAAGGAGTTGCAAATGGAAACGGTGAGCTGCCACCAGCTGCTGCCGTTGAAAATGGCCATCACATAGTGTGCACAAAAGGAGCTGCAAATGGAAATGGTGTGACAGAGAATGGCCAGAACGGCGCAAAATACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004351 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

243

Amino Acids

26.5

Weight (kDa)

8.57

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029435)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01160 pycom16g01060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	11, 30
AccII	CGCG	1 cut(s)	456
AciI	CCGC	5 cut(s)	80, 116, 289, 428, 454
AcoI	YGGCCR	2 cut(s)	646, 703
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	391
AdeI	CACNNNGTG	1 cut(s)	658
AfaI	GTAC	2 cut(s)	44, 224
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	563, 641
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	7 cut(s)	103, 178, 532, 541, 619, 629, 674
AluI	AGCT	7 cut(s)	103, 178, 532, 541, 619, 629, 674
Alw21I	GWGCWC	2 cut(s)	534, 665
Alw26I	GTCTC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	661
AlwNI	CAGNNNCTG	2 cut(s)	554, 632
AoxI	GGCC	7 cut(s)	6, 81, 135, 444, 496, 646, 703
ApaLI	GTGCAC	1 cut(s)	661
ApeKI	GCWGC	6 cut(s)	541, 554, 619, 629, 632, 674
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	3 cut(s)	82, 118, 496
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	275, 386, 626
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	665
BalI	TGGCCA	2 cut(s)	648, 705
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	534, 665
BbvI	GCAGC	6 cut(s)	528, 541, 606, 616, 619, 661
BccI	CCATC	2 cut(s)	151, 657
BceAI	ACGGC	4 cut(s)	339, 503, 620, 727
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	727
BfuAI	ACCTGC	2 cut(s)	11, 30
BfuI	GTATCC	1 cut(s)	464
BglI	GCCNNNNNGGC	1 cut(s)	711
BisI	GCNGC	7 cut(s)	81, 542, 555, 620, 630, 633, 675
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	7 cut(s)	82, 543, 556, 621, 631, 634, 676
Bme1390I	CCNGG	2 cut(s)	123, 286
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	82, 118, 496
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	123, 286
BmsI	GCATC	6 cut(s)	39, 103, 229, 421, 519, 553
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	3 cut(s)	121, 122, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	121, 122, 378
BseGI	GGATG	5 cut(s)	118, 132, 223, 436, 544
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	665
BseXI	GCAGC	6 cut(s)	528, 541, 606, 616, 619, 661
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	7 cut(s)	8, 83, 137, 446, 498, 648, 705
BshVI	ATCGAT	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	534, 665
BsiSI	CCGG	2 cut(s)	53, 285
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	7 cut(s)	8, 83, 137, 446, 498, 648, 705
Bsp1286I	GDGCHC	2 cut(s)	534, 665
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	5 cut(s)	80, 116, 289, 428, 454
BspANI	GGCC	7 cut(s)	8, 83, 137, 446, 498, 648, 705
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	2 cut(s)	11, 30
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	3 cut(s)	121, 122, 378
BssNI	GRCGYC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	585, 614
BstACI	GRCGYC	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	37, 411
BstDEI	CTNAG	3 cut(s)	435, 486, 492
BstF5I	GGATG	5 cut(s)	118, 132, 223, 436, 544
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	716
BstMAI	GTCTC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	3 cut(s)	529, 538, 711
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	3 cut(s)	39, 424, 443
BstSCI	CCNGG	2 cut(s)	121, 284
BstSLI	GKGCMC	1 cut(s)	665
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	6 cut(s)	528, 541, 606, 616, 619, 661
Bsu15I	ATCGAT	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	7 cut(s)	8, 83, 137, 446, 498, 648, 705
BsuTUI	ATCGAT	1 cut(s)	155
BtsCI	GGATG	5 cut(s)	118, 132, 223, 436, 544
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	2 cut(s)	11, 30
Cac8I	GCNNGC	2 cut(s)	37, 411
CaiI	CAGNNNCTG	2 cut(s)	554, 632
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	3 cut(s)	82, 118, 496
ClaI	ATCGAT	1 cut(s)	155
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	43, 223
CviAII	CATG	5 cut(s)	36, 184, 214, 421, 440
CviQI	GTAC	2 cut(s)	43, 223
DdeI	CTNAG	3 cut(s)	435, 486, 492
DraIII	CACNNNGTG	1 cut(s)	658
EaeI	YGGCCR	2 cut(s)	646, 703
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	5 cut(s)	39, 187, 217, 424, 443
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	5 cut(s)	35, 183, 213, 420, 439
Fnu4HI	GCNGC	7 cut(s)	81, 542, 555, 620, 630, 633, 675
FokI	GGATG	5 cut(s)	125, 139, 230, 443, 531
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	7 cut(s)	81, 542, 555, 620, 630, 633, 675
FspBI	CTAG	1 cut(s)	727
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	7 cut(s)	81, 542, 555, 620, 630, 633, 675
HaeIII	GGCC	7 cut(s)	8, 83, 137, 446, 498, 648, 705
HapII	CCGG	2 cut(s)	53, 285
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	39, 187, 217, 424, 443
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	53, 285
HphI	GGTGA	3 cut(s)	275, 386, 626
Hpy166II	GTNNAC	2 cut(s)	211, 663
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	2 cut(s)	211, 663
HpyAV	CCTTC	3 cut(s)	160, 264, 509
HpyCH4III	ACNGT	2 cut(s)	585, 614
HpyCH4V	TGCA	8 cut(s)	35, 39, 413, 510, 544, 602, 663, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	529, 538, 711
HpyF3I	CTNAG	3 cut(s)	435, 486, 492
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	5 cut(s)	39, 187, 217, 424, 443
HspAI	GCGC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	456, 671
Lsp1109I	GCAGC	6 cut(s)	528, 541, 606, 616, 619, 661
LweI	GCATC	6 cut(s)	39, 103, 229, 421, 519, 553
MaeI	CTAG	1 cut(s)	727
MaeIII	GTNAC	4 cut(s)	145, 356, 392, 691
MhlI	GDGCHC	2 cut(s)	534, 665
MlsI	TGGCCA	2 cut(s)	648, 705
MluCI	AATT	2 cut(s)	58, 398
MluNI	TGGCCA	2 cut(s)	648, 705
MnlI	CCTC	7 cut(s)	19, 148, 203, 261, 373, 381, 487
Mox20I	TGGCCA	2 cut(s)	648, 705
MscI	TGGCCA	2 cut(s)	648, 705
MseI	TTAA	3 cut(s)	294, 369, 525
Msp20I	TGGCCA	2 cut(s)	648, 705
MspA1I	CMGCKG	2 cut(s)	428, 629
MspI	CCGG	2 cut(s)	53, 285
MspR9I	CCNGG	2 cut(s)	123, 286
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	529, 538, 711
NciI	CCSGG	1 cut(s)	286
NlaIII	CATG	5 cut(s)	39, 187, 217, 424, 443
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	3 cut(s)	145, 392, 691
NspI	RCATGY	3 cut(s)	39, 424, 443
PaeI	GCATGC	1 cut(s)	39
PasI	CCCWGGG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	420
PctI	GAATGC	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	82, 543, 556, 621, 631, 634, 676
PscI	ACATGT	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	3 cut(s)	82, 118, 496
PstNI	CAGNNNCTG	2 cut(s)	554, 632
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	44, 224
RsaNI	GTAC	2 cut(s)	43, 223
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	294, 369, 525
SatI	GCNGC	7 cut(s)	81, 542, 555, 620, 630, 633, 675
Sau96I	GGNCC	3 cut(s)	82, 118, 496
ScrFI	CCNGG	2 cut(s)	123, 286
SduI	GDGCHC	2 cut(s)	534, 665
SfaNI	GCATC	6 cut(s)	39, 103, 229, 421, 519, 553
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	2 cut(s)	58, 398
SsiI	CCGC	5 cut(s)	80, 116, 289, 428, 454
SspMI	CTAG	1 cut(s)	727
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	121, 284
TaaI	ACNGT	2 cut(s)	585, 614
TaqI	TCGA	3 cut(s)	155, 195, 534
TasI	AATT	2 cut(s)	58, 398
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	294, 369, 525
Tru9I	TTAA	3 cut(s)	294, 369, 525
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	145, 392, 691
TseI	GCWGC	6 cut(s)	541, 554, 619, 629, 632, 674
Tsp45I	GTSAC	3 cut(s)	145, 392, 691
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	241
VneI	GTGCAC	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	3 cut(s)	39, 424, 443
XspI	CTAG	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.