Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0029435

Physical Location & Seq

Genomic Coordinates Forward (+)

642362 .. 642865

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAAACTGTCACTACCTTGCGATGGTGGTGAAAGAAGGAGTGGAAAAAACCGGGCAGTTTAAGATACTGTCAAAGGACATTGGGGTTCCGGTGGTGGCCTTTTCACTAAAGGACAGAAGCCGTTACGATGAGTTTAAGGTGTCGGAGGGTTTGCGTCGGCACCAATTTATTGTGCCTGCATATCACATGCCAGCGGATGCTAAGCATGTGGCCTTGCTCCGTGTTGTCATAAGGGGAGACTTCTCTCGCACTAGGGCTGAGTACCTTCTGGCCAGCATCAACGCTGTGCTGAAAGAGCTCGATGAGCTGCATCCTGTTGCTGCCATTCAAGAAAATGGTCATCATAAACTGTCTCTAATTGGAGTTGCAAATGGAAACGGCGAGTTGCCACCAGCTGCTGCCGTTGAAAATTGTCATCACAAAGTGTGTGCAATTGGAGCTGCAAATGGAAACGGTGGGACAGAGAACGGCCAGATGACGGACGGTGCAAAATGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004351 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

168

Amino Acids

18.17

Weight (kDa)

7.12

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029435)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01160 pycom16g01060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	273, 472
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	25, 481
AgsI	TTSAA	2 cut(s)	332, 410
AluBI	AGCT	4 cut(s)	301, 310, 398, 443
AluI	AGCT	4 cut(s)	301, 310, 398, 443
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	234, 360
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	4 cut(s)	99, 213, 273, 472
ApeKI	GCWGC	5 cut(s)	310, 323, 398, 401, 443
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	297, 310, 385, 388, 430
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	4 cut(s)	108, 389, 397, 487
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	234, 360
BfaI	CTAG	2 cut(s)	255, 502
BisI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	312, 325, 400, 403, 445
Bme1390I	CCNGG	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	90, 164
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	3 cut(s)	190, 288, 322
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 481
BseGI	GGATG	2 cut(s)	205, 313
BseLI	CCNNNNNNNGG	2 cut(s)	25, 481
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	5 cut(s)	297, 310, 385, 388, 430
BshFI	GGCC	4 cut(s)	101, 215, 275, 474
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	54, 92
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	25, 481
BsmAI	GTCTC	2 cut(s)	234, 360
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	4 cut(s)	101, 215, 275, 474
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	4 cut(s)	101, 215, 275, 474
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	90, 164
BspT107I	GGYRCC	1 cut(s)	162
Bst4CI	ACNGT	5 cut(s)	11, 72, 354, 458, 488
BstC8I	GCNNGC	3 cut(s)	180, 195, 277
BstDEI	CTNAG	2 cut(s)	204, 261
BstF5I	GGATG	2 cut(s)	205, 313
BstMAI	GTCTC	2 cut(s)	234, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 307, 440
BstNSI	RCATGY	2 cut(s)	193, 212
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	5 cut(s)	297, 310, 385, 388, 430
BsuRI	GGCC	4 cut(s)	101, 215, 275, 474
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	205, 313
Cac8I	GCNNGC	3 cut(s)	180, 195, 277
CaiI	CAGNNNCTG	1 cut(s)	401
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	190, 209
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	204, 261
DraIII	CACNNNGTG	1 cut(s)	427
EaeI	YGGCCR	2 cut(s)	273, 472
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	2 cut(s)	193, 212
FaiI	YATR	5 cut(s)	184, 191, 210, 233, 348
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	2 cut(s)	189, 208
Fnu4HI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
FokI	GGATG	2 cut(s)	212, 300
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
FspBI	CTAG	2 cut(s)	255, 502
GluI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
HaeIII	GGCC	4 cut(s)	101, 215, 275, 474
HapII	CCGG	2 cut(s)	54, 92
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	193, 212
HpaII	CCGG	2 cut(s)	54, 92
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	332
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	32, 278
HpyCH4III	ACNGT	5 cut(s)	11, 72, 354, 458, 488
HpyCH4V	TGCA	6 cut(s)	182, 313, 371, 434, 446, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 307, 440
HpyF3I	CTNAG	2 cut(s)	204, 261
Hsp92II	CATG	2 cut(s)	193, 212
LmnI	GCTCC	2 cut(s)	225, 440
LpnPI	CCDG	9 cut(s)	67, 105, 192, 207, 257, 289, 330, 408, 488
Lsp1109I	GCAGC	5 cut(s)	297, 310, 385, 388, 430
LweI	GCATC	3 cut(s)	190, 288, 322
MaeI	CTAG	2 cut(s)	255, 502
MaeIII	GTNAC	2 cut(s)	11, 125
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	167, 360, 412, 435
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	1 cut(s)	142
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	63, 138
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	197, 398
MspI	CCGG	2 cut(s)	54, 92
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	298, 307, 440
NciI	CCSGG	1 cut(s)	55
NlaIII	CATG	2 cut(s)	193, 212
NlaIV	GGNNCC	2 cut(s)	90, 164
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	2 cut(s)	193, 212
PkrI	GCNGC	5 cut(s)	312, 325, 400, 403, 445
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	90, 164
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	63, 138
SatI	GCNGC	5 cut(s)	311, 324, 399, 402, 444
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	21, 144, 270, 303, 312, 400, 445
SfaNI	GCATC	3 cut(s)	190, 288, 322
Sse9I	AATT	4 cut(s)	167, 360, 412, 435
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	255, 502
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	5 cut(s)	11, 72, 354, 458, 488
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	167, 360, 412, 435
Tru1I	TTAA	2 cut(s)	63, 138
Tru9I	TTAA	2 cut(s)	63, 138
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	5 cut(s)	310, 323, 398, 401, 443
Tsp45I	GTSAC	1 cut(s)	11
TspGWI	ACGGA	2 cut(s)	212, 497
XceI	RCATGY	2 cut(s)	193, 212
XspI	CTAG	2 cut(s)	255, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.