Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029436

Physical Location & Seq

Genomic Coordinates Forward (+)

1709259 .. 1710571

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCAGATGCTGCATGGGGGCTTTCTTTTGGAAAGTTCTTGGAACTGAGCTTTTCAAACCATGCAACTGCGAATCGTGTTGCTACTTGTGGCCATTCATTACAACGGGATTGTCTCCGTTACTATGGGTTTGGGAGCATGGTTGCGTTCTTCCGATATTCCCCAATTGATATTCTTTCTGTCCATTTGCCCCCTTCAGTGCTTGAATTCAATGGCCAAGTTCAACCAGAGTGGATCAGACAAGAGGCAACAGAGCTTATGGGAAAAATGGAAACCATATATGCAGAGGTTTCTGATGTACTTGACTGCATGGAGGAGAAAAATAGATCCTTTGGACATCAAATATCAGGTACAATTGAGTTACAGAACCACATTATGGAGCTGAAAGATCTGCTTAAGAAGGAAAGAAACGACTACATTGGTTTTCTGCAACCTGCTTTTGTGGAGACGTCAGAACCAGGCCAAATGCCTGTTTCCGACATTCTGGAGCTAAATCGCTTGAGACGTTCTCTTTTAATTGGTTCTCATGTTTGGGATCGCCAGCTTTATTCATTGGACTCGCTGCTTAAAAGGAATCCTGTTTCCATGGCTACTGATGGGGTTGTATCTTTTGCCCACCTGCAAGAGTTGATAAGTGGTCCATCTGGCAAGGATGGCAGCCTTGACTATGGCTCTGAAGATAATGTATCTGATTCTTCAAAATTTCAAGTGCCTTCTGAAGACATATCATGTCACTATAGCCGAGAGGAGGAAATGCAATCAGATAAGGAAATTGTTGGTCAGACATCCTGTGAAGGCTTGTCCTCCCTTAAATCTACACTGTCCGAGAGAATAGATTCTGCATGGACTGGAACAGATCAACTTCTGGTGAAAGCTCAACCTCTTGATGCATCACATTTGACACAACTTCAAGCTGGTGCTGTCATGCATACTAGGCAAAGTGATCGATCCTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010118 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0090332 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 PIP5K

Protein Analysis

320

Amino Acids

35.68

Weight (kDa)

4.97

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029436)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g02460 pycom16g02490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	627
AatII	GACGTC	1 cut(s)	452
Acc36I	ACCTGC	2 cut(s)	442, 627
AccB7I	CCANNNNNTGG	1 cut(s)	376
AclWI	GGATC	4 cut(s)	242, 321, 543, 942
AcoI	YGGCCR	2 cut(s)	91, 214
AcsI	RAATTY	2 cut(s)	206, 701
AcuI	CTGAAG	3 cut(s)	180, 696, 738
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	2 cut(s)	300, 352
AfiI	CCNNNNNNNGG	2 cut(s)	376, 748
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	7 cut(s)	57, 206, 211, 224, 699, 707, 911
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	7 cut(s)	51, 256, 382, 490, 544, 875, 914
AluI	AGCT	7 cut(s)	51, 256, 382, 490, 544, 875, 914
Alw26I	GTCTC	3 cut(s)	119, 440, 496
AlwI	GGATC	4 cut(s)	242, 321, 543, 942
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	91, 214, 460
ApeKI	GCWGC	3 cut(s)	11, 562, 657
ApoI	RAATTY	2 cut(s)	206, 701
Asp700I	GAANNNNTTC	1 cut(s)	835
AspS9I	GGNCC	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	880
AvaII	GGWCC	1 cut(s)	638
BalI	TGGCCA	2 cut(s)	93, 216
BbsI	GAAGAC	1 cut(s)	726
BbvI	GCAGC	2 cut(s)	549, 669
BccI	CCATC	3 cut(s)	590, 647, 649
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	119, 440, 496
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	736
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	2 cut(s)	442, 627
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	12, 563, 658
BlsI	GCNGC	3 cut(s)	13, 564, 659
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	877, 899
BpiI	GAAGAC	1 cut(s)	726
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	946
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 748
Bse1I	ACTGG	1 cut(s)	853
BseBI	CCWGG	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	946
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	658, 785
BseLI	CCNNNNNNNGG	2 cut(s)	376, 748
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	2 cut(s)	329, 761
BseXI	GCAGC	2 cut(s)	549, 669
BshFI	GGCC	3 cut(s)	93, 216, 462
BshVI	ATCGAT	1 cut(s)	946
BslI	CCNNNNNNNGG	2 cut(s)	376, 748
BsmAI	GTCTC	3 cut(s)	119, 440, 496
BsmBI	CGTCTC	2 cut(s)	440, 496
BsnI	GGCC	3 cut(s)	93, 216, 462
Bsp143I	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
Bsp19I	CCATGG	1 cut(s)	585
BspANI	GGCC	3 cut(s)	93, 216, 462
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	946
BspMI	ACCTGC	2 cut(s)	442, 627
BspPI	GGATC	4 cut(s)	242, 321, 543, 942
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	822
BstACI	GRCGYC	1 cut(s)	449
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	658, 785
BstKTI	GATC	7 cut(s)	237, 329, 391, 538, 859, 946, 950
BstMAI	GTCTC	3 cut(s)	119, 440, 496
BstMBI	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
BstMWI	GCNNNNNNNGC	2 cut(s)	654, 934
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	736
BstV1I	GCAGC	2 cut(s)	549, 669
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	2 cut(s)	326, 388
BstYI	RGATCY	2 cut(s)	326, 388
Bsu15I	ATCGAT	1 cut(s)	946
BsuRI	GGCC	3 cut(s)	93, 216, 462
BsuTUI	ATCGAT	1 cut(s)	946
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	658, 785
BtsIMutI	CAGTG	2 cut(s)	204, 818
BveI	ACCTGC	2 cut(s)	442, 627
Cac8I	GCNNGC	1 cut(s)	542
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	638
ClaI	ATCGAT	1 cut(s)	946
Csp6I	GTAC	2 cut(s)	299, 351
CspCI	CAANNNNNGTGG	2 cut(s)	212, 247
CviAII	CATG	9 cut(s)	15, 62, 139, 310, 527, 586, 729, 843, 925
CviQI	GTAC	2 cut(s)	299, 351
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	7 cut(s)	236, 328, 390, 537, 858, 945, 949
DpnII	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
EaeI	YGGCCR	2 cut(s)	91, 214
Eco130I	CCWWGG	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	3 cut(s)	180, 696, 738
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	585
EcoT22I	ATGCAT	2 cut(s)	892, 930
ErhI	CCWWGG	1 cut(s)	585
Esp3I	CGTCTC	2 cut(s)	440, 496
FaeI	CATG	9 cut(s)	18, 65, 142, 313, 530, 589, 732, 846, 928
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	9 cut(s)	14, 61, 138, 309, 526, 585, 728, 842, 924
Fnu4HI	GCNGC	3 cut(s)	12, 563, 658
FokI	GGATG	2 cut(s)	665, 772
Fsp4HI	GCNGC	3 cut(s)	12, 563, 658
FspBI	CTAG	1 cut(s)	933
GluI	GCNGC	3 cut(s)	12, 563, 658
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	3 cut(s)	93, 216, 462
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	9 cut(s)	18, 65, 142, 313, 530, 589, 732, 846, 928
HinfI	GANTC	5 cut(s)	73, 557, 574, 692, 836
HphI	GGTGA	1 cut(s)	880
Hpy188III	TCNNGA	2 cut(s)	485, 884
HpyAV	CCTTC	4 cut(s)	204, 394, 723, 788
HpyCH4III	ACNGT	1 cut(s)	822
HpyCH4IV	ACGT	2 cut(s)	449, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	654, 934
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	449, 505
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	9 cut(s)	18, 65, 142, 313, 530, 589, 732, 846, 928
Kzo9I	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
LmnI	GCTCC	3 cut(s)	135, 379, 487
Lsp1109I	GCAGC	2 cut(s)	549, 669
LweI	GCATC	2 cut(s)	877, 899
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	2 cut(s)	449, 505
MaeIII	GTNAC	3 cut(s)	119, 360, 731
MalI	GATC	7 cut(s)	236, 328, 390, 537, 858, 945, 949
MboI	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
MboII	GAAGA	4 cut(s)	142, 687, 689, 731
MfeI	CAATTG	2 cut(s)	165, 354
MflI	RGATCY	2 cut(s)	326, 388
MlsI	TGGCCA	2 cut(s)	93, 216
MluCI	AATT	6 cut(s)	165, 206, 354, 516, 701, 771
MluNI	TGGCCA	2 cut(s)	93, 216
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	7 cut(s)	238, 280, 307, 739, 742, 814, 891
Mox20I	TGGCCA	2 cut(s)	93, 216
Mph1103I	ATGCAT	2 cut(s)	892, 930
MroXI	GAANNNNTTC	1 cut(s)	835
MscI	TGGCCA	2 cut(s)	93, 216
MseI	TTAA	5 cut(s)	396, 515, 567, 810, 958
Msp20I	TGGCCA	2 cut(s)	93, 216
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	2 cut(s)	165, 354
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	654, 934
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
NlaIII	CATG	9 cut(s)	18, 65, 142, 313, 530, 589, 732, 846, 928
NmeAIII	GCCGAG	1 cut(s)	767
NmuCI	GTSAC	1 cut(s)	731
NsiI	ATGCAT	2 cut(s)	892, 930
PaqCI	CACCTGC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	835
PfeI	GAWTC	4 cut(s)	73, 574, 692, 836
PflMI	CCANNNNNTGG	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	13, 564, 659
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	638
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	326, 388
RsaI	GTAC	2 cut(s)	300, 352
RsaNI	GTAC	2 cut(s)	299, 351
SaqAI	TTAA	5 cut(s)	396, 515, 567, 810, 958
SatI	GCNGC	3 cut(s)	12, 563, 658
Sau3AI	GATC	7 cut(s)	234, 326, 388, 535, 856, 943, 947
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	877, 899
SfcI	CTRYAG	1 cut(s)	736
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	395, 499
SmoI	CTYRAG	2 cut(s)	395, 499
Sse9I	AATT	6 cut(s)	165, 206, 354, 516, 701, 771
SspMI	CTAG	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	822
TaiI	ACGT	2 cut(s)	452, 508
TaqI	TCGA	1 cut(s)	946
TasI	AATT	6 cut(s)	165, 206, 354, 516, 701, 771
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	4 cut(s)	73, 574, 692, 836
Tru1I	TTAA	5 cut(s)	396, 515, 567, 810, 958
Tru9I	TTAA	5 cut(s)	396, 515, 567, 810, 958
TscAI	CASTG	2 cut(s)	204, 825
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	3 cut(s)	11, 562, 657
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	87, 540
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	204, 825
Van91I	CCANNNNNTGG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	2 cut(s)	206, 701
XmnI	GAANNNNTTC	1 cut(s)	835
XspI	CTAG	1 cut(s)	933
ZraI	GACGTC	1 cut(s)	450
Zsp2I	ATGCAT	2 cut(s)	892, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.