pycom16g02490
TCP Family

1-phosphatidylinositol-3-phosphate 5-kinase FAB1C

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
1624579 .. 1624931
353 bp
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UTR
Exon/CDS
Intron
pycom16g02490.2

Sequence Viewer

Length: 273 bp
ATGTCAGATGCTGCATGGGGGCTTTCTTTTGGAAAGTTCTTGGAACTGAGCTTTTCAAATCATGCAACTGCAAATCGTGTTGCTACTTGTGGCCATTCATTACAACGGGATTGTCTCCGTTACTATGGGTTTGGAAGCATGGTTGCGTTCTTCCGATATGCCGCAATTGATATTCTTTCTGTCCATTTGCCACCTTCAGTGCTTGAATTCAATGGCCAAGTCCAACCAGAGTGGATAAGAAAAGAGGCAACAGATTTAAGAATTTTAATCTAA

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

6.81

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029436)

Species Orthologous Gene IDs
pyrus_communis pycom13g02460 pycom16g02490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 91, 214
AcsI RAATTY 2 cut(s) 206, 261
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 3 cut(s) 57, 206, 211
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 2 cut(s) 91, 214
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 206, 261
BalI TGGCCA 2 cut(s) 93, 216
BcoDI GTCTC 1 cut(s) 119
BisI GCNGC 2 cut(s) 12, 162
BlsI GCNGC 2 cut(s) 13, 163
BseMII CTCAG 1 cut(s) 38
BshFI GGCC 2 cut(s) 93, 216
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 2 cut(s) 93, 216
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 93, 216
BspCNI CTCAG 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 93, 216
BtsIMutI CAGTG 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 3 cut(s) 15, 62, 139
CviJI RGCY 4 cut(s) 22, 51, 93, 216
CviKI_1 RGCY 4 cut(s) 22, 51, 93, 216
DdeI CTNAG 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 91, 214
Eco57I CTGAAG 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 206
FaeI CATG 3 cut(s) 18, 65, 142
FaiI YATR 5 cut(s) 16, 63, 126, 140, 159
FatI CATG 3 cut(s) 14, 61, 138
Fnu4HI GCNGC 2 cut(s) 12, 162
Fsp4HI GCNGC 2 cut(s) 12, 162
GluI GCNGC 2 cut(s) 12, 162
HaeIII GGCC 2 cut(s) 93, 216
Hin1II CATG 3 cut(s) 18, 65, 142
Hpy188I TCNGA 2 cut(s) 7, 155
HpyAV CCTTC 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 14, 65, 71
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 3 cut(s) 18, 65, 142
LpnPI CCDG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 165
MlsI TGGCCA 2 cut(s) 93, 216
MluCI AATT 3 cut(s) 165, 206, 261
MluNI TGGCCA 2 cut(s) 93, 216
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 1 cut(s) 238
Mox20I TGGCCA 2 cut(s) 93, 216
MscI TGGCCA 2 cut(s) 93, 216
MseI TTAA 2 cut(s) 257, 266
Msp20I TGGCCA 2 cut(s) 93, 216
MunI CAATTG 1 cut(s) 165
NlaIII CATG 3 cut(s) 18, 65, 142
PkrI GCNGC 2 cut(s) 13, 163
PstNI CAGNNNCTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 257, 266
SatI GCNGC 2 cut(s) 12, 162
SetI ASST 2 cut(s) 53, 196
Sse9I AATT 3 cut(s) 165, 206, 261
SsiI CCGC 1 cut(s) 162
TasI AATT 3 cut(s) 165, 206, 261
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 2 cut(s) 257, 266
Tru9I TTAA 2 cut(s) 257, 266
TscAI CASTG 1 cut(s) 204
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 204
XapI RAATTY 2 cut(s) 206, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.