Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029438

Physical Location & Seq

Genomic Coordinates Forward (+)

2369012 .. 2371513

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATCACCGTCCACGCGGTCGTGCTGCTAAGCATCTTCTGATTCAGATGTACGGAGCACCTCGGATTTCTAAGAAGGTCATACGCTCTTCAGGACAAGCATATGAAGATCGTAGTCTGAACTATTTCATGGACTGTGATGACCAGTGGGTCCGGACAACTGATTTCACTCCATCTCGTGCTATTGGGCAGTCTTTTGCATTAAGCTTGGAGCTTCCTCGTGGTCTCAAACTTCCAGATTTTCGAGAAAACTTTCCTGGGTATGAAAAGATTGAAGGTAACCTTGTCTTGGAGGTTGGTCCTCCTTATTCTTGCAACCCGAGTCTGGGTCCCATGGTTGTTCCTCCTCGAGGTGTCAATGTGCCATATGATATCTTGTTTAAAGTACATTCTCTGCTTCAGCTTGGGTGTCTTCCAGGGCCAAGACTTGATGTTAAATTTTATAAGATGGTTGATCCGCGCAGAATTGATCGTGCATGTATAGAGTATGCCCTAGATAAATTATATAATTTGAAAGAGACCTGCTATAAACCTTCAGAGTGGCTTAATGAGCAGTACATGAAGTACCTCACGTCAAAGAGACGTCCACAGTCATCAGTCATATCCTTAGATTCTGGGTTGGTATATGTACGCAGGGTCCAAATTACACCATGTCGTGTATTTTCTTTTGGTCCTGAGGTCAATGTCTCAAATCGTGTACTACGCAATTATCCAGATGATATTGATAACTTCATTCGTGTTTCCTTTGTTGACGAGGAGATGGATCGAGTTTATTCTGCGGATTTGCTTCCACGTACTTATGCTGCCTATGAGGATGGGAAAACTGACATCTACAAGCGGATTCTTTTTATTCTCAGAAACGGCATGGTAATTGGTGCAAAGAAATTCGAGTTTCTCGCATTCTCATCAAGTCAATTGCGAGAGAATTCTATGTGGATGTTTGCTTCAAGACAGGGACTTACTGTTGGAAATTCAAATCAAAACAAGTTGCTATTGTTGAAAATCAATGTCAAAGTTAGGCATGGAAAGTTAGGCAATGTTAGGTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

351

Amino Acids

40.34

Weight (kDa)

9.49

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_RDR2	PF24823	6 - 95	7.4e-25	RDR2 PH-like domain
RDR6_2nd	PF24577	13 - 70	1.1e-06	RNA-dependent RNA polymerase 6 second domain
RdRP_helical	PF26252	111 - 195	4.5e-11	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	215 - 318	9.1e-23	RNA dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029438)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g03570
rosa_samantha	Rh4CG423500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AasI	GACNNNNNNGTC	1 cut(s)	149
AatII	GACGTC	1 cut(s)	586
AbsI	CCTCGAGG	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	530
AccII	CGCG	2 cut(s)	18, 460
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	4 cut(s)	18, 458, 779, 838
AclWI	GGATC	3 cut(s)	12, 449, 771
AcsI	RAATTY	4 cut(s)	437, 884, 925, 970
AcuI	CTGAAG	3 cut(s)	75, 383, 519
AcyI	GRCGYC	1 cut(s)	583
AfaI	GTAC	7 cut(s)	53, 387, 557, 566, 630, 699, 796
AfiI	CCNNNNNNNGG	4 cut(s)	289, 325, 326, 350
AgsI	TTSAA	5 cut(s)	275, 514, 948, 975, 1000
AjiI	CACGTC	1 cut(s)	573
AjnI	CCWGG	2 cut(s)	256, 415
AluBI	AGCT	3 cut(s)	207, 214, 403
AluI	AGCT	3 cut(s)	207, 214, 403
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	4 cut(s)	230, 512, 574, 691
AlwI	GGATC	3 cut(s)	12, 449, 771
Ama87I	CYCGRG	2 cut(s)	319, 348
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	2 cut(s)	26, 803
ApoI	RAATTY	4 cut(s)	437, 884, 925, 970
Asp700I	GAANNNNTTC	2 cut(s)	125, 252
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	6 cut(s)	151, 299, 329, 419, 637, 671
AvaI	CYCGRG	2 cut(s)	319, 348
AvaII	GGWCC	5 cut(s)	151, 299, 329, 637, 671
AxyI	CCTNAGG	1 cut(s)	675
BauI	CACGAG	2 cut(s)	177, 219
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	13, 790
BccI	CCATC	4 cut(s)	181, 442, 754, 809
BceAI	ACGGC	1 cut(s)	877
BciT130I	CCWGG	2 cut(s)	258, 417
BcoDI	GTCTC	4 cut(s)	230, 512, 574, 691
BfaI	CTAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	27, 804
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	28, 805
Bme1390I	CCNGG	2 cut(s)	258, 417
Bme18I	GGWCC	5 cut(s)	151, 299, 329, 637, 671
BmeT110I	CYCGRG	2 cut(s)	319, 348
BmgBI	CACGTC	1 cut(s)	573
BmgT120I	GGNCC	6 cut(s)	151, 299, 329, 419, 637, 671
BmiI	GGNNCC	4 cut(s)	152, 330, 331, 638
BmrFI	CCNGG	2 cut(s)	258, 417
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	794
BsaHI	GRCGYC	1 cut(s)	583
BsaI	GGTCTC	2 cut(s)	230, 512
BsaJI	CCNNGG	4 cut(s)	62, 257, 333, 416
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 325, 326, 350
Bse1I	ACTGG	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	1 cut(s)	1042
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	258, 417
BseDI	CCNNGG	4 cut(s)	62, 257, 333, 416
BseGI	GGATG	2 cut(s)	820, 942
BseLI	CCNNNNNNNGG	4 cut(s)	289, 325, 326, 350
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	2 cut(s)	666, 868
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	336, 770
BseXI	GCAGC	2 cut(s)	13, 790
Bsh1236I	CGCG	2 cut(s)	18, 460
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	2 cut(s)	319, 348
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	315, 969
BslI	CCNNNNNNNGG	4 cut(s)	289, 325, 326, 350
BsmAI	GTCTC	4 cut(s)	230, 512, 574, 691
BsmBI	CGTCTC	1 cut(s)	574
BsmFI	GGGAC	2 cut(s)	315, 969
BsmI	GAATGC	1 cut(s)	899
BsnI	GGCC	1 cut(s)	421
Bso31I	GGTCTC	2 cut(s)	230, 512
BsoBI	CYCGRG	2 cut(s)	319, 348
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	4, 109, 454, 469, 763
Bsp1720I	GCTNAGC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	4 cut(s)	18, 458, 779, 838
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	2 cut(s)	667, 867
BspEI	TCCGGA	1 cut(s)	153
BspFNI	CGCG	2 cut(s)	18, 460
BspLI	GGNNCC	4 cut(s)	152, 330, 331, 638
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	3 cut(s)	12, 449, 771
BspQI	GCTCTTC	1 cut(s)	94
BspTNI	GGTCTC	2 cut(s)	230, 512
BsrDI	GCAATG	1 cut(s)	1042
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	62, 257, 333, 416
BssMI	GATC	5 cut(s)	4, 109, 454, 469, 763
BssNI	GRCGYC	1 cut(s)	583
BssSI	CACGAG	2 cut(s)	177, 219
BssT1I	CCWWGG	1 cut(s)	333
Bst2BI	CACGAG	2 cut(s)	177, 219
Bst2UI	CCWGG	2 cut(s)	258, 417
Bst4CI	ACNGT	4 cut(s)	11, 137, 591, 964
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	794
BstDEI	CTNAG	5 cut(s)	30, 72, 607, 675, 854
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	278
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	820, 942
BstFNI	CGCG	2 cut(s)	18, 460
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	5 cut(s)	7, 112, 457, 472, 766
BstMAI	GTCTC	4 cut(s)	230, 512, 574, 691
BstMBI	GATC	5 cut(s)	4, 109, 454, 469, 763
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNI	CCWGG	2 cut(s)	258, 417
BstNSI	RCATGY	1 cut(s)	480
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	256, 415
BstUI	CGCG	2 cut(s)	18, 460
BstV1I	GCAGC	2 cut(s)	13, 790
BstV2I	GAAGAC	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	421
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	820, 942
BtsIMutI	CAGTG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	530
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	6 cut(s)	151, 299, 329, 419, 637, 671
Csp6I	GTAC	7 cut(s)	52, 386, 556, 565, 629, 698, 795
CviAII	CATG	7 cut(s)	130, 334, 477, 559, 651, 865, 1022
CviJI	RGCY	5 cut(s)	207, 214, 403, 421, 544
CviKI_1	RGCY	5 cut(s)	207, 214, 403, 421, 544
CviQI	GTAC	7 cut(s)	52, 386, 556, 565, 629, 698, 795
DdeI	CTNAG	5 cut(s)	30, 72, 607, 675, 854
DpnI	GATC	5 cut(s)	6, 111, 456, 471, 765
DpnII	GATC	5 cut(s)	4, 109, 454, 469, 763
DraI	TTTAAA	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	230, 512
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	5 cut(s)	151, 299, 329, 637, 671
Eco57I	CTGAAG	3 cut(s)	75, 383, 519
Eco81I	CCTNAGG	1 cut(s)	675
Eco88I	CYCGRG	2 cut(s)	319, 348
Eco91I	GGTNACC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	2 cut(s)	256, 415
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	7 cut(s)	133, 337, 480, 562, 654, 868, 1025
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	315, 969
FatI	CATG	7 cut(s)	129, 333, 476, 558, 650, 864, 1021
FauNDI	CATATG	2 cut(s)	103, 367
Fnu4HI	GCNGC	2 cut(s)	27, 804
FokI	GGATG	2 cut(s)	827, 949
Fsp4HI	GCNGC	2 cut(s)	27, 804
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	2 cut(s)	27, 804
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	583
Hin1II	CATG	7 cut(s)	133, 337, 480, 562, 654, 868, 1025
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	4 cut(s)	43, 322, 611, 841
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	4 cut(s)	14, 587, 698, 751
Hpy188I	TCNGA	6 cut(s)	42, 48, 66, 120, 538, 857
Hpy188III	TCNNGA	7 cut(s)	93, 154, 236, 245, 674, 713, 948
Hpy8I	GTNNAC	4 cut(s)	14, 587, 698, 751
HpyAV	CCTTC	3 cut(s)	70, 269, 543
HpyCH4III	ACNGT	4 cut(s)	11, 137, 591, 964
HpyCH4IV	ACGT	3 cut(s)	572, 583, 793
HpyCH4V	TGCA	4 cut(s)	200, 315, 476, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	5 cut(s)	30, 72, 607, 675, 854
HpySE526I	ACGT	3 cut(s)	572, 583, 793
Hsp92I	GRCGYC	1 cut(s)	583
Hsp92II	CATG	7 cut(s)	133, 337, 480, 562, 654, 868, 1025
HspAI	GCGC	1 cut(s)	460
KflI	GGGWCCC	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	5 cut(s)	4, 109, 454, 469, 763
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	56, 211
Lsp1109I	GCAGC	2 cut(s)	13, 790
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	3 cut(s)	572, 583, 793
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	5 cut(s)	6, 111, 456, 471, 765
MboI	GATC	5 cut(s)	4, 109, 454, 469, 763
MboII	GAAGA	4 cut(s)	29, 81, 119, 404
MfeI	CAATTG	1 cut(s)	914
MhlI	GDGCHC	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	946
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	2 cut(s)	125, 252
MseI	TTAA	4 cut(s)	203, 381, 435, 546
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	258, 417
MunI	CAATTG	1 cut(s)	914
Mva1269I	GAATGC	1 cut(s)	899
MvaI	CCWGG	2 cut(s)	258, 417
MvnI	CGCG	2 cut(s)	18, 460
MwoI	GCNNNNNNNGC	1 cut(s)	550
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	2 cut(s)	103, 367
NdeII	GATC	5 cut(s)	4, 109, 454, 469, 763
NlaIII	CATG	7 cut(s)	133, 337, 480, 562, 654, 868, 1025
NlaIV	GGNNCC	4 cut(s)	152, 330, 331, 638
NspI	RCATGY	1 cut(s)	480
PaeR7I	CTCGAG	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	94
PctI	GAATGC	1 cut(s)	899
PdmI	GAANNNNTTC	2 cut(s)	125, 252
PfeI	GAWTC	3 cut(s)	43, 611, 841
PkrI	GCNGC	2 cut(s)	28, 805
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	794
PpuMI	RGGWCCY	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	256, 415
PspEI	GGTNACC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	256, 415
PspN4I	GGNNCC	4 cut(s)	152, 330, 331, 638
PspPI	GGNCC	6 cut(s)	151, 299, 329, 419, 637, 671
PspPPI	RGGWCCY	1 cut(s)	329
PspXI	VCTCGAGB	1 cut(s)	348
RsaI	GTAC	7 cut(s)	53, 387, 557, 566, 630, 699, 796
RsaNI	GTAC	7 cut(s)	52, 386, 556, 565, 629, 698, 795
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	4 cut(s)	203, 381, 435, 546
SatI	GCNGC	2 cut(s)	27, 804
Sau3AI	GATC	5 cut(s)	4, 109, 454, 469, 763
Sau96I	GGNCC	6 cut(s)	151, 299, 329, 419, 637, 671
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	258, 417
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	43
Sfr274I	CTCGAG	1 cut(s)	348
SinI	GGWCC	5 cut(s)	151, 299, 329, 637, 671
SlaI	CTCGAG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
SsiI	CCGC	4 cut(s)	18, 458, 779, 838
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	2 cut(s)	256, 415
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	11, 137, 591, 964
TaiI	ACGT	3 cut(s)	575, 586, 796
TaqI	TCGA	4 cut(s)	244, 349, 766, 888
TatI	WGTACW	3 cut(s)	385, 555, 697
TfiI	GAWTC	3 cut(s)	43, 611, 841
Tru1I	TTAA	4 cut(s)	203, 381, 435, 546
Tru9I	TTAA	4 cut(s)	203, 381, 435, 546
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	2 cut(s)	26, 803
TspDTI	ATGAA	5 cut(s)	118, 120, 279, 575, 721
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	152
VpaK11BI	GGWCC	5 cut(s)	151, 299, 329, 637, 671
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	4 cut(s)	437, 884, 925, 970
XceI	RCATGY	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	348
XmnI	GAANNNNTTC	2 cut(s)	125, 252
XspI	CTAG	1 cut(s)	494
ZraI	GACGTC	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.