Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g03570 |
| rosa_samantha | Rh4CG423500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 150 |
| Acc36I | ACCTGC | 1 cut(s) | 433 |
| AciI | CCGC | 1 cut(s) | 428 |
| AclWI | GGATC | 3 cut(s) | 341, 354, 865 |
| AcsI | RAATTY | 3 cut(s) | 136, 764, 833 |
| AfaI | GTAC | 3 cut(s) | 458, 522, 688 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 211, 224, 237, 238 |
| AgsI | TTSAA | 6 cut(s) | 131, 287, 406, 533, 669, 832 |
| AluBI | AGCT | 3 cut(s) | 66, 100, 414 |
| AluI | AGCT | 3 cut(s) | 66, 100, 414 |
| Alw26I | GTCTC | 1 cut(s) | 583 |
| AlwI | GGATC | 3 cut(s) | 341, 354, 865 |
| AoxI | GGCC | 3 cut(s) | 109, 311, 486 |
| ApoI | RAATTY | 3 cut(s) | 136, 764, 833 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 280, 312, 845, 877 |
| AspS9I | GGNCC | 5 cut(s) | 110, 214, 311, 487, 563 |
| AvaII | GGWCC | 2 cut(s) | 214, 563 |
| AxyI | CCTNAGG | 1 cut(s) | 567 |
| BaeGI | GKGCMC | 1 cut(s) | 385 |
| BamHI | GGATCC | 1 cut(s) | 346 |
| BccI | CCATC | 5 cut(s) | 27, 155, 176, 550, 646 |
| BceAI | ACGGC | 1 cut(s) | 757 |
| BcoDI | GTCTC | 1 cut(s) | 583 |
| BfaI | CTAG | 2 cut(s) | 386, 696 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BfuAI | ACCTGC | 1 cut(s) | 433 |
| BglII | AGATCT | 1 cut(s) | 208 |
| Bme18I | GGWCC | 2 cut(s) | 214, 563 |
| BmgT120I | GGNCC | 5 cut(s) | 110, 214, 311, 487, 563 |
| BmiI | GGNNCC | 3 cut(s) | 216, 229, 348 |
| BmsI | GCATC | 1 cut(s) | 717 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 170, 202 |
| BpuEI | CTTGAG | 1 cut(s) | 461 |
| Bsa29I | ATCGAT | 1 cut(s) | 615 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 211, 224, 237, 238 |
| Bse118I | RCCGGY | 1 cut(s) | 484 |
| Bse1I | ACTGG | 2 cut(s) | 598, 606 |
| Bse21I | CCTNAGG | 1 cut(s) | 567 |
| BseCI | ATCGAT | 1 cut(s) | 615 |
| BseGI | GGATG | 3 cut(s) | 22, 187, 822 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 211, 224, 237, 238 |
| BseMII | CTCAG | 2 cut(s) | 558, 748 |
| BseNI | ACTGG | 2 cut(s) | 598, 606 |
| BseRI | GAGGAG | 1 cut(s) | 662 |
| BseSI | GKGCMC | 1 cut(s) | 385 |
| BshFI | GGCC | 3 cut(s) | 111, 313, 488 |
| BshVI | ATCGAT | 1 cut(s) | 615 |
| BsiSI | CCGG | 1 cut(s) | 485 |
| BslFI | GGGAC | 2 cut(s) | 5, 200 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 211, 224, 237, 238 |
| BsmAI | GTCTC | 1 cut(s) | 583 |
| BsmFI | GGGAC | 2 cut(s) | 5, 200 |
| BsmI | GAATGC | 1 cut(s) | 779 |
| BsnI | GGCC | 3 cut(s) | 111, 313, 488 |
| Bsp1286I | GDGCHC | 1 cut(s) | 385 |
| Bsp143I | GATC | 3 cut(s) | 208, 346, 870 |
| BspACI | CCGC | 1 cut(s) | 428 |
| BspANI | GGCC | 3 cut(s) | 111, 313, 488 |
| BspCNI | CTCAG | 2 cut(s) | 559, 747 |
| BspDI | ATCGAT | 1 cut(s) | 615 |
| BspLI | GGNNCC | 3 cut(s) | 216, 229, 348 |
| BspMAI | CTGCAG | 1 cut(s) | 238 |
| BspMI | ACCTGC | 1 cut(s) | 433 |
| BspPI | GGATC | 3 cut(s) | 341, 354, 865 |
| BsrFI | RCCGGY | 1 cut(s) | 484 |
| BsrI | ACTGG | 2 cut(s) | 598, 606 |
| BssAI | RCCGGY | 1 cut(s) | 484 |
| BssMI | GATC | 3 cut(s) | 208, 346, 870 |
| BstC8I | GCNNGC | 1 cut(s) | 486 |
| BstDEI | CTNAG | 3 cut(s) | 499, 567, 734 |
| BstF5I | GGATG | 3 cut(s) | 22, 187, 822 |
| BstKTI | GATC | 3 cut(s) | 211, 349, 873 |
| BstMAI | GTCTC | 1 cut(s) | 583 |
| BstMBI | GATC | 3 cut(s) | 208, 346, 870 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 594 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstSLI | GKGCMC | 1 cut(s) | 385 |
| BstX2I | RGATCY | 2 cut(s) | 208, 346 |
| BstYI | RGATCY | 2 cut(s) | 208, 346 |
| Bsu15I | ATCGAT | 1 cut(s) | 615 |
| Bsu36I | CCTNAGG | 1 cut(s) | 567 |
| BsuRI | GGCC | 3 cut(s) | 111, 313, 488 |
| BsuTUI | ATCGAT | 1 cut(s) | 615 |
| BtsCI | GGATG | 3 cut(s) | 22, 187, 822 |
| BtsIMutI | CAGTG | 1 cut(s) | 613 |
| BveI | ACCTGC | 1 cut(s) | 433 |
| Cac8I | GCNNGC | 1 cut(s) | 486 |
| Cfr10I | RCCGGY | 1 cut(s) | 484 |
| Cfr13I | GGNCC | 5 cut(s) | 110, 214, 311, 487, 563 |
| ClaI | ATCGAT | 1 cut(s) | 615 |
| Csp6I | GTAC | 3 cut(s) | 457, 521, 687 |
| CviQI | GTAC | 3 cut(s) | 457, 521, 687 |
| DdeI | CTNAG | 3 cut(s) | 499, 567, 734 |
| DpnI | GATC | 3 cut(s) | 210, 348, 872 |
| DpnII | GATC | 3 cut(s) | 208, 346, 870 |
| DraI | TTTAAA | 1 cut(s) | 268 |
| Eco32I | GATATC | 2 cut(s) | 259, 613 |
| Eco47I | GGWCC | 2 cut(s) | 214, 563 |
| Eco81I | CCTNAGG | 1 cut(s) | 567 |
| EcoRV | GATATC | 2 cut(s) | 259, 613 |
| FaqI | GGGAC | 2 cut(s) | 5, 200 |
| FauNDI | CATATG | 1 cut(s) | 253 |
| FokI | GGATG | 3 cut(s) | 29, 194, 829 |
| FspBI | CTAG | 2 cut(s) | 386, 696 |
| HaeIII | GGCC | 3 cut(s) | 111, 313, 488 |
| HapII | CCGG | 1 cut(s) | 485 |
| HinfI | GANTC | 2 cut(s) | 77, 503 |
| HpaII | CCGG | 1 cut(s) | 485 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 453, 737 |
| Hpy188III | TCNNGA | 3 cut(s) | 122, 440, 566 |
| HpyAV | CCTTC | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 5 cut(s) | 201, 236, 779, 799, 826 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 594 |
| HpyF3I | CTNAG | 3 cut(s) | 499, 567, 734 |
| KroI | GCCGGC | 1 cut(s) | 484 |
| KroNI | GCCGGC | 1 cut(s) | 486 |
| Kzo9I | GATC | 3 cut(s) | 208, 346, 870 |
| LweI | GCATC | 1 cut(s) | 717 |
| MaeI | CTAG | 2 cut(s) | 386, 696 |
| MaeIII | GTNAC | 1 cut(s) | 847 |
| MalI | GATC | 3 cut(s) | 210, 348, 872 |
| MboI | GATC | 3 cut(s) | 208, 346, 870 |
| MboII | GAAGA | 4 cut(s) | 75, 143, 366, 617 |
| MfeI | CAATTG | 1 cut(s) | 794 |
| MflI | RGATCY | 2 cut(s) | 208, 346 |
| MhlI | GDGCHC | 1 cut(s) | 385 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MnlI | CCTC | 7 cut(s) | 172, 436, 486, 519, 562, 640, 888 |
| MroNI | GCCGGC | 1 cut(s) | 484 |
| MseI | TTAA | 4 cut(s) | 171, 267, 272, 573 |
| MspI | CCGG | 1 cut(s) | 485 |
| MunI | CAATTG | 1 cut(s) | 794 |
| Mva1269I | GAATGC | 1 cut(s) | 779 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 594 |
| NaeI | GCCGGC | 1 cut(s) | 486 |
| NdeI | CATATG | 1 cut(s) | 253 |
| NdeII | GATC | 3 cut(s) | 208, 346, 870 |
| NgoMIV | GCCGGC | 1 cut(s) | 484 |
| NlaIV | GGNNCC | 3 cut(s) | 216, 229, 348 |
| PctI | GAATGC | 1 cut(s) | 779 |
| PdiI | GCCGGC | 1 cut(s) | 486 |
| PfeI | GAWTC | 1 cut(s) | 503 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| PsiI | TTATAA | 1 cut(s) | 150 |
| PspN4I | GGNNCC | 3 cut(s) | 216, 229, 348 |
| PspPI | GGNCC | 5 cut(s) | 110, 214, 311, 487, 563 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 513, 545 |
| PstI | CTGCAG | 1 cut(s) | 238 |
| PsuI | RGATCY | 2 cut(s) | 208, 346 |
| RsaI | GTAC | 3 cut(s) | 458, 522, 688 |
| RsaNI | GTAC | 3 cut(s) | 457, 521, 687 |
| SaqAI | TTAA | 4 cut(s) | 171, 267, 272, 573 |
| Sau3AI | GATC | 3 cut(s) | 208, 346, 870 |
| Sau96I | GGNCC | 5 cut(s) | 110, 214, 311, 487, 563 |
| SbfI | CCTGCAGG | 1 cut(s) | 238 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SdaI | CCTGCAGG | 1 cut(s) | 238 |
| SduI | GDGCHC | 1 cut(s) | 385 |
| SfaNI | GCATC | 1 cut(s) | 717 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| SinI | GGWCC | 2 cut(s) | 214, 563 |
| SmlI | CTYRAG | 1 cut(s) | 440 |
| SmoI | CTYRAG | 1 cut(s) | 440 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 238 |
| SsiI | CCGC | 1 cut(s) | 428 |
| SspMI | CTAG | 2 cut(s) | 386, 696 |
| TaqI | TCGA | 2 cut(s) | 615, 837 |
| TaqII | GACCGA | 1 cut(s) | 45 |
| TfiI | GAWTC | 1 cut(s) | 503 |
| Tru1I | TTAA | 4 cut(s) | 171, 267, 272, 573 |
| Tru9I | TTAA | 4 cut(s) | 171, 267, 272, 573 |
| TscAI | CASTG | 1 cut(s) | 613 |
| TspDTI | ATGAA | 5 cut(s) | 17, 75, 435, 624, 798 |
| TspGWI | ACGGA | 1 cut(s) | 538 |
| TspRI | CASTG | 1 cut(s) | 613 |
| VpaK11BI | GGWCC | 2 cut(s) | 214, 563 |
| XapI | RAATTY | 3 cut(s) | 136, 764, 833 |
| XspI | CTAG | 2 cut(s) | 386, 696 |