pycom13g03880

aluminum-activated malate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012092
Physical Location & Seq
Forward (+)
2577076 .. 2578053
978 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGGAAAAGCCACTTTTGGGCAGCTTCAAAGAAACCGAGTACCAAACAGCAGAAAGCAGGTGCATCTGTTTCAATTCCATGGGCAGAATGATGATGAATTCTTGGAAGGATTTACTAGATTTTGCAGTAAATGCATGGCAAATGGGCCGTTCTGATCCCAGGAAAGTCATCTTTGCAATAAAAATGGGACTGGCATTGTCCACGGTTTCCTTGCTAATATTTTGGAAAAAGTCGTATCGCGACGTTAGTCAGTACTCAATCTGGGCTATCCTCACTGTCATTGTGATGTTCGAATTCAGCATCGGAGGGACTTTCATCAAAGGATTTAACCGCGGGCTGGGGACGTTGTTTGCTGGAATGCTTGCATTCTGCTTTGCTGAGTTATCTTTGCTGGCTGCAAAATTGGAGGAAGTTGTGATTATCATAAGATTTTTTGCATCTTACTTGAAGCTGTACCCAACAATGAAGCCCTACGAGTACGGCTTTCGGGTTTTCGTGTTGACATACTGCATCCTAATGGTTGCCGGGAACAGAACAAGGGAGTACAGTGAGGCAGTTGTGACTCGACTGGTTCTTATTGGAGTGGGAGCAGCTGTTTGTTTAGTCGTTAACATATGCATATATCCGATATGGTCGGGAGAGGATCTGCATAACTTGGTGGTGAAGAATTTCAAGGGAGATGCTACTTCATTAGAAGGTACAATTACAATATGTGAATTTTTTTCAAGTTCTAATCAGCTCTCTGCTCTATTAATCTGCTCAAACTTATTGCTTAGGCTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ALMT

Protein Analysis

262

Amino Acids

29.49

Weight (kDa)

8.87

Isoelectric Point (pI)

16.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 46 - 235 6e-79 Aluminium activated malate transporter
FUSC_2 PF13515 84 - 203 3.9e-10 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68600 AT2G17470 AT2G17470
fragaria_vesca FvH4_4g27680
malus_domestica MD13G1044200.v1.1 MD16G1045000.v1.1
prunus_persica Prupe.1G308300_v2.0.a1 Prupe.1G308300_v2.0.a1 Prupe.1G308300_v2.0.a1
pyrus_communis pycom13g03880
rosa_chinensis RchiOBHm_Chr4g0435521
rosa_laevigata RLG00000006585
rosa_multiflora Rmu_sc0001940.1_g000033
rosa_roxburghii Rroxscaffold_5G00376750
rosa_rugosa Rorug04G0285900
rosa_samantha Rh4BG349800 Rh4CG364500 Rh4DG344100
rosa_wichuraiana Rw4G029800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 48
AccII CGCG 2 cut(s) 240, 333
AciI CCGC 2 cut(s) 331, 333
AclWI GGATC 2 cut(s) 149, 651
AcsI RAATTY 4 cut(s) 97, 293, 667, 716
AfaI GTAC 6 cut(s) 41, 254, 455, 479, 545, 700
AfiI CCNNNNNNNGG 2 cut(s) 17, 337
AgsI TTSAA 5 cut(s) 28, 73, 448, 673, 726
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 4 cut(s) 24, 451, 593, 739
AluI AGCT 4 cut(s) 24, 451, 593, 739
AlwI GGATC 2 cut(s) 149, 651
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 4 cut(s) 21, 395, 590, 778
ApoI RAATTY 4 cut(s) 97, 293, 667, 716
AseI ATTAAT 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 1 cut(s) 673
AsuII TTCGAA 1 cut(s) 291
BbvI GCAGC 4 cut(s) 33, 382, 602, 765
BceAI ACGGC 2 cut(s) 132, 496
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 1 cut(s) 526
BfaI CTAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 48
BisI GCNGC 4 cut(s) 22, 396, 591, 779
BlsI GCNGC 4 cut(s) 23, 397, 592, 780
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 160, 526
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 160, 526
BmsI GCATC 5 cut(s) 72, 309, 446, 519, 670
BoxI GACNNNNGTC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 773
Bpu14I TTCGAA 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 526
BsaJI CCNNGG 4 cut(s) 78, 158, 201, 331
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 337
Bse1I ACTGG 2 cut(s) 195, 573
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 4 cut(s) 78, 158, 201, 331
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 17, 337
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 195, 573
BseXI GCAGC 4 cut(s) 33, 382, 602, 765
BseYI CCCAGC 1 cut(s) 337
Bsh1236I CGCG 2 cut(s) 240, 333
BshFI GGCC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 3 cut(s) 201, 322, 355
BslI CCNNNNNNNGG 2 cut(s) 17, 337
BsmFI GGGAC 3 cut(s) 201, 322, 355
BsmI GAATGC 2 cut(s) 363, 365
BsnI GGCC 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 154, 643
Bsp19I CCATGG 1 cut(s) 78
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 2 cut(s) 331, 333
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 2 cut(s) 240, 333
BspMI ACCTGC 1 cut(s) 48
BspPI GGATC 2 cut(s) 149, 651
BspT104I TTCGAA 1 cut(s) 291
BsrI ACTGG 2 cut(s) 195, 573
BssECI CCNNGG 4 cut(s) 78, 158, 201, 331
BssMI GATC 2 cut(s) 154, 643
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 205, 277, 548
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 3 cut(s) 335, 363, 393
BstDEI CTNAG 2 cut(s) 378, 773
BstDSI CCRYGG 3 cut(s) 78, 201, 331
BstF5I GGATG 1 cut(s) 510
BstFNI CGCG 2 cut(s) 240, 333
BstKTI GATC 2 cut(s) 157, 646
BstMBI GATC 2 cut(s) 154, 643
BstMWI GCNNNNNNNGC 2 cut(s) 131, 778
BstNI CCWGG 1 cut(s) 160
BstPAI GACNNNNGTC 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 158, 524
BstUI CGCG 2 cut(s) 240, 333
BstV1I GCAGC 4 cut(s) 33, 382, 602, 765
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 3 cut(s) 78, 201, 331
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 273, 553
BtuMI TCGCGA 1 cut(s) 240
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 335, 363, 393
Cfr13I GGNCC 1 cut(s) 145
Cfr42I CCGCGG 1 cut(s) 334
Csp6I GTAC 6 cut(s) 40, 253, 454, 478, 544, 699
CviAII CATG 2 cut(s) 79, 135
CviQI GTAC 6 cut(s) 40, 253, 454, 478, 544, 699
DdeI CTNAG 2 cut(s) 378, 773
DpnI GATC 2 cut(s) 156, 645
DpnII GATC 2 cut(s) 154, 643
Eco130I CCWWGG 1 cut(s) 78
EcoRI GAATTC 2 cut(s) 97, 293
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 2 cut(s) 136, 620
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 82, 138
FaqI GGGAC 3 cut(s) 201, 322, 355
FatI CATG 2 cut(s) 78, 134
FauI CCCGC 1 cut(s) 326
FauNDI CATATG 1 cut(s) 614
Fnu4HI GCNGC 4 cut(s) 22, 396, 591, 779
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 4 cut(s) 22, 396, 591, 779
FspBI CTAG 1 cut(s) 116
GluI GCNGC 4 cut(s) 22, 396, 591, 779
GsaI CCCAGC 1 cut(s) 341
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 525
Hin1II CATG 2 cut(s) 82, 138
HincII GTYRAC 2 cut(s) 501, 610
HindII GTYRAC 2 cut(s) 501, 610
HinfI GANTC 1 cut(s) 562
HpaI GTTAAC 1 cut(s) 610
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 3 cut(s) 201, 501, 610
Hpy188I TCNGA 3 cut(s) 154, 305, 627
Hpy188III TCNNGA 2 cut(s) 239, 636
Hpy8I GTNNAC 3 cut(s) 201, 501, 610
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 100, 689
HpyCH4III ACNGT 3 cut(s) 205, 277, 548
HpyCH4IV ACGT 2 cut(s) 243, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 778
HpyF3I CTNAG 2 cut(s) 378, 773
HpySE526I ACGT 2 cut(s) 243, 344
Hsp92II CATG 2 cut(s) 82, 138
KspAI GTTAAC 1 cut(s) 610
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 154, 643
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 4 cut(s) 33, 382, 602, 765
LweI GCATC 5 cut(s) 72, 309, 446, 519, 670
MaeI CTAG 1 cut(s) 116
MaeII ACGT 2 cut(s) 243, 344
MaeIII GTNAC 1 cut(s) 559
MalI GATC 2 cut(s) 156, 645
MboI GATC 2 cut(s) 154, 643
MboII GAAGA 1 cut(s) 676
MflI RGATCY 1 cut(s) 643
MluCI AATT 7 cut(s) 73, 97, 293, 401, 667, 702, 716
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 5 cut(s) 281, 299, 400, 544, 634
Mph1103I ATGCAT 2 cut(s) 136, 620
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 4 cut(s) 327, 609, 752, 784
MslI CAYNNNNRTG 2 cut(s) 284, 515
MspA1I CMGCKG 2 cut(s) 333, 593
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 2 cut(s) 160, 526
Mva1269I GAATGC 2 cut(s) 363, 365
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 240, 333
MwoI GCNNNNNNNGC 2 cut(s) 131, 778
NciI CCSGG 1 cut(s) 526
NcoI CCATGG 1 cut(s) 78
NdeI CATATG 1 cut(s) 614
NdeII GATC 2 cut(s) 154, 643
NlaIII CATG 2 cut(s) 82, 138
NmuCI GTSAC 1 cut(s) 559
NruI TCGCGA 1 cut(s) 240
NsiI ATGCAT 2 cut(s) 136, 620
NspV TTCGAA 1 cut(s) 291
PaqCI CACCTGC 1 cut(s) 48
PctI GAATGC 2 cut(s) 363, 365
PdmI GAANNNNTTC 1 cut(s) 668
PkrI GCNGC 4 cut(s) 23, 397, 592, 780
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PshAI GACNNNNGTC 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 158
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 593
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 6 cut(s) 41, 254, 455, 479, 545, 700
RsaNI GTAC 6 cut(s) 40, 253, 454, 478, 544, 699
RseI CAYNNNNRTG 2 cut(s) 284, 515
SacII CCGCGG 1 cut(s) 334
SaqAI TTAA 4 cut(s) 327, 609, 752, 784
SatI GCNGC 4 cut(s) 22, 396, 591, 779
Sau3AI GATC 2 cut(s) 154, 643
Sau96I GGNCC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 2 cut(s) 160, 526
SetI ASST 8 cut(s) 26, 62, 246, 347, 453, 595, 700, 741
SfaNI GCATC 5 cut(s) 72, 309, 446, 519, 670
Sfr303I CCGCGG 1 cut(s) 334
SfuI TTCGAA 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 284, 515
Sse9I AATT 7 cut(s) 73, 97, 293, 401, 667, 702, 716
SsiI CCGC 2 cut(s) 331, 333
SspI AATATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 158, 524
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 3 cut(s) 205, 277, 548
TaiI ACGT 2 cut(s) 246, 347
TaqI TCGA 2 cut(s) 291, 565
TasI AATT 7 cut(s) 73, 97, 293, 401, 667, 702, 716
TatI WGTACW 2 cut(s) 252, 543
Tru1I TTAA 4 cut(s) 327, 609, 752, 784
Tru9I TTAA 4 cut(s) 327, 609, 752, 784
TscAI CASTG 2 cut(s) 280, 553
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 4 cut(s) 21, 395, 590, 778
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 4 cut(s) 110, 304, 479, 678
TspRI CASTG 2 cut(s) 280, 553
VspI ATTAAT 1 cut(s) 752
XapI RAATTY 4 cut(s) 97, 293, 667, 716
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 254
Zsp2I ATGCAT 2 cut(s) 136, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.