Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029439

Physical Location & Seq

Genomic Coordinates Forward (+)

2960843 .. 2962342

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCATTACCCCTCGCCTATATGCTCAGTCCAACTCAGTTGGTTGGGGTCTCTTTCTGTCCCTCCATTACCTTCATCCACCACTCTCAGTCTCTGTCTCTCTCTCCCTCCCTCTCTCTCTCTCGCTGGTCGACCTGCAGACACCCGTTTGCCTAATATTGACTCTCTATTTGTATTTGATCATCATAGTGCAACATTTTCTGCAATTATGATACCTCTTGGGCAGGAAAACAGCATGACAAACACTCCACCTAACAATCTACTCTCTAATCTGAACCGGCCTGATCAGAACTGTTCGGTTCAGGCCGAACCCTCCGCTTCGTCGAGGACTAATGTGAGCCCATGTTTGGCTGACGACATGCCGGACCAGCCCCGACCAACCTCGCACAGGGCTTCAATTTTGCACCAGTCGTTGCGCCCTATAACACTTAAGTTTGAAGATGTTGGATACAGCATTAAGCTGCAAGCAACAAACGGAGGTTGTGTTGCTTCACATAAGCCAAAACCAACACGCACTGTACTCAATGGAGTGAGTGGAATCGCTTTACCGGGTGAGCTATTCGCAATGTTGGGGCCATCCGGGAGCGGCAAGACCACTCTCTTGACCGCCCTGGGCGGCCGCTTGCCAGGTAAAATCTCTGGCAAGATAACATACAATGGCCAGAACTTCTCAAGCTCCATGAAGCACAACATCGGCTTCGTTTCGCAAGATGACGTCTTGTATCCTCACCTTACTGTTCTGGAGACCCTAGCCTACACTGCCTTGCTAAGGCTGCCCAAGCAGCTTACAAAAGAAGAGAAAATTGAGCAAGTCGAAACGGTGATAATGGAGCTCGGGTTGAACCGGTGTCGTGATACTGTAGTTGGTGGGCCTCTACTACGAGGCATTTCGGGTGGTGAGCGAAAACGGGTCAGTATTGGGCAAGAGATGCTTGTCAACCCGAGTCTTTTGCTTTTGGACGAGCCCACTTCTGGGCTCGACTCAACCACGGCCCAACGTATCATCACGACGTTGCGCAGACTGGCCCGTGGTGGTCGGACGGTGATCGACCACCATCCATCAGCCGTCAAGCAGGCTATACAGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

364

Amino Acids

38.98

Weight (kDa)

8.9

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029439)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g04350
rosa_multiflora	Rmu_co8273227.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	717
Acc16I	TGCGCA	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	142
AccBSI	CCGCTC	1 cut(s)	585
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	5 cut(s)	315, 585, 606, 615, 619
AcoI	YGGCCR	2 cut(s)	616, 658
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	5 cut(s)	346, 387, 768, 971, 972
AflII	CTTAAG	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	843
AgsI	TTSAA	3 cut(s)	396, 437, 841
AjnI	CCWGG	2 cut(s)	609, 625
AluBI	AGCT	5 cut(s)	460, 556, 675, 784, 832
AluI	AGCT	5 cut(s)	460, 556, 675, 784, 832
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	4 cut(s)	54, 95, 101, 737
AlwNI	CAGNNNCTG	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	833, 940
AoxI	GGCC	8 cut(s)	278, 303, 572, 616, 658, 869, 990, 1023
ApeKI	GCWGC	3 cut(s)	460, 772, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AsiGI	ACCGGT	1 cut(s)	843
AspLEI	GCGC	2 cut(s)	417, 1017
AspS9I	GGNCC	5 cut(s)	364, 572, 869, 991, 1024
AsuC2I	CCSGG	2 cut(s)	549, 580
AsuHPI	GGTGA	5 cut(s)	563, 719, 832, 908, 1054
AvaI	CYCGRG	2 cut(s)	833, 940
AvaII	GGWCC	1 cut(s)	364
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BalI	TGGCCA	1 cut(s)	660
BanII	GRGCYC	4 cut(s)	341, 834, 966, 978
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	3 cut(s)	447, 759, 793
BccI	CCATC	3 cut(s)	583, 1062, 1066
BceAI	ACGGC	2 cut(s)	1005, 1049
BcgI	CGANNNNNNTGC	2 cut(s)	931, 965
BciT130I	CCWGG	2 cut(s)	611, 627
BciVI	GTATCC	2 cut(s)	440, 732
BclI	TGATCA	2 cut(s)	178, 283
BcnI	CCSGG	2 cut(s)	549, 580
BcoDI	GTCTC	4 cut(s)	54, 95, 101, 737
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	2 cut(s)	135, 858
BfrI	CTTAAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	2 cut(s)	440, 732
BisI	GCNGC	6 cut(s)	461, 586, 616, 619, 773, 782
BlsI	GCNGC	6 cut(s)	462, 587, 617, 620, 774, 783
Bme1390I	CCNGG	4 cut(s)	549, 580, 611, 627
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	2 cut(s)	833, 940
BmgT120I	GGNCC	5 cut(s)	364, 572, 869, 991, 1024
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	4 cut(s)	549, 580, 611, 627
BmsI	GCATC	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	761
Bpu10I	CCTNAGC	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	655
BpuMI	CCSGG	2 cut(s)	549, 580
BsaHI	GRCGYC	1 cut(s)	714
BsaI	GGTCTC	2 cut(s)	54, 737
BsaJI	CCNNGG	4 cut(s)	609, 610, 987, 1027
BsaWI	WCCGGW	1 cut(s)	843
BsaXI	ACNNNNNCTCC	6 cut(s)	229, 259, 468, 498, 821, 851
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 387, 768, 971, 972
Bse118I	RCCGGY	2 cut(s)	276, 843
Bse1I	ACTGG	2 cut(s)	406, 1026
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	611, 627
BseDI	CCNNGG	4 cut(s)	609, 610, 987, 1027
BseGI	GGATG	4 cut(s)	74, 575, 1054, 1090
BseLI	CCNNNNNNNGG	5 cut(s)	346, 387, 768, 971, 972
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	39, 49, 100
BseNI	ACTGG	2 cut(s)	406, 1026
BseX3I	CGGCCG	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	447, 759, 793
Bsh1285I	CGRYCG	1 cut(s)	619
BshFI	GGCC	8 cut(s)	280, 305, 574, 618, 660, 871, 992, 1025
BshTI	ACCGGT	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	834
BsiHKCI	CYCGRG	2 cut(s)	833, 940
BsiSI	CCGG	5 cut(s)	277, 362, 548, 579, 844
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	5 cut(s)	346, 387, 768, 971, 972
BsmAI	GTCTC	4 cut(s)	54, 95, 101, 737
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	8 cut(s)	280, 305, 574, 618, 660, 871, 992, 1025
Bso31I	GGTCTC	2 cut(s)	54, 737
BsoBI	CYCGRG	2 cut(s)	833, 940
Bsp1286I	GDGCHC	4 cut(s)	341, 834, 966, 978
Bsp143I	GATC	3 cut(s)	178, 283, 1044
BspACI	CCGC	5 cut(s)	315, 585, 606, 615, 619
BspANI	GGCC	8 cut(s)	280, 305, 574, 618, 660, 871, 992, 1025
BspCNI	CTCAG	3 cut(s)	38, 48, 99
BspLI	GGNNCC	1 cut(s)	573
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	428
BspTNI	GGTCTC	2 cut(s)	54, 737
BsrBI	CCGCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	2 cut(s)	276, 843
BsrI	ACTGG	2 cut(s)	406, 1026
BssAI	RCCGGY	2 cut(s)	276, 843
BssECI	CCNNGG	4 cut(s)	609, 610, 987, 1027
BssMI	GATC	3 cut(s)	178, 283, 1044
BssNI	GRCGYC	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	611, 627
Bst4CI	ACNGT	6 cut(s)	293, 517, 736, 820, 859, 1042
Bst6I	CTCTTC	1 cut(s)	789
BstACI	GRCGYC	1 cut(s)	714
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	928
BstC8I	GCNNGC	3 cut(s)	465, 623, 1074
BstDEI	CTNAG	4 cut(s)	25, 35, 86, 767
BstDSI	CCRYGG	2 cut(s)	987, 1027
BstENI	CCTNNNNNAGG	2 cut(s)	385, 766
BstF5I	GGATG	4 cut(s)	74, 575, 1054, 1090
BstHHI	GCGC	2 cut(s)	417, 1017
BstKTI	GATC	3 cut(s)	181, 286, 1047
BstMAI	GTCTC	4 cut(s)	54, 95, 101, 737
BstMBI	GATC	3 cut(s)	178, 283, 1044
BstMCI	CGRYCG	1 cut(s)	619
BstMWI	GCNNNNNNNGC	6 cut(s)	367, 758, 772, 778, 781, 928
BstNI	CCWGG	2 cut(s)	611, 627
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	4 cut(s)	547, 578, 609, 625
BstSFI	CTRYAG	2 cut(s)	135, 858
BstV1I	GCAGC	3 cut(s)	447, 759, 793
BstZI	CGGCCG	1 cut(s)	616
BsuI	GTATCC	2 cut(s)	440, 732
BsuRI	GGCC	8 cut(s)	280, 305, 574, 618, 660, 871, 992, 1025
BtgI	CCRYGG	2 cut(s)	987, 1027
BtsCI	GGATG	4 cut(s)	74, 575, 1054, 1090
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	2 cut(s)	513, 756
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	465, 623, 1074
CaiI	CAGNNNCTG	1 cut(s)	93
CciNI	GCGGCCGC	1 cut(s)	616
CfoI	GCGC	2 cut(s)	417, 1017
Cfr10I	RCCGGY	2 cut(s)	276, 843
Cfr13I	GGNCC	5 cut(s)	364, 572, 869, 991, 1024
Csp6I	GTAC	1 cut(s)	518
CspAI	ACCGGT	1 cut(s)	843
CviAII	CATG	4 cut(s)	235, 342, 358, 679
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	25, 35, 86, 767
DpnI	GATC	3 cut(s)	180, 285, 1046
DpnII	GATC	3 cut(s)	178, 283, 1044
EaeI	YGGCCR	2 cut(s)	616, 658
EagI	CGGCCG	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Ecl136II	GAGCTC	1 cut(s)	832
EclXI	CGGCCG	1 cut(s)	616
Eco24I	GRGCYC	4 cut(s)	341, 834, 966, 978
Eco31I	GGTCTC	2 cut(s)	54, 737
Eco47I	GGWCC	1 cut(s)	364
Eco52I	CGGCCG	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	832
Eco88I	CYCGRG	2 cut(s)	833, 940
EcoICRI	GAGCTC	1 cut(s)	832
EcoNI	CCTNNNNNAGG	2 cut(s)	385, 766
EcoRII	CCWGG	2 cut(s)	609, 625
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	4 cut(s)	341, 834, 966, 978
FaeI	CATG	4 cut(s)	238, 345, 361, 682
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	4 cut(s)	234, 341, 357, 678
FbaI	TGATCA	2 cut(s)	178, 283
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	6 cut(s)	461, 586, 616, 619, 773, 782
FokI	GGATG	3 cut(s)	61, 562, 1041
FriOI	GRGCYC	4 cut(s)	341, 834, 966, 978
Fsp4HI	GCNGC	6 cut(s)	461, 586, 616, 619, 773, 782
FspBI	CTAG	1 cut(s)	749
FspI	TGCGCA	1 cut(s)	1016
GlaI	GCGC	2 cut(s)	416, 1016
GluI	GCNGC	6 cut(s)	461, 586, 616, 619, 773, 782
GsuI	CTGGAG	1 cut(s)	761
HaeIII	GGCC	8 cut(s)	280, 305, 574, 618, 660, 871, 992, 1025
HapII	CCGG	5 cut(s)	277, 362, 548, 579, 844
HhaI	GCGC	2 cut(s)	417, 1017
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	238, 345, 361, 682
Hin6I	GCGC	2 cut(s)	415, 1015
HinP1I	GCGC	2 cut(s)	415, 1015
HincII	GTYRAC	2 cut(s)	131, 937
HindII	GTYRAC	2 cut(s)	131, 937
HinfI	GANTC	4 cut(s)	161, 537, 943, 980
HpaII	CCGG	5 cut(s)	277, 362, 548, 579, 844
HphI	GGTGA	5 cut(s)	563, 719, 832, 908, 1054
Hpy166II	GTNNAC	2 cut(s)	131, 937
Hpy188I	TCNGA	3 cut(s)	273, 288, 1038
Hpy188III	TCNNGA	4 cut(s)	601, 740, 851, 1006
Hpy8I	GTNNAC	2 cut(s)	131, 937
Hpy99I	CGWCG	2 cut(s)	325, 1012
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	6 cut(s)	293, 517, 736, 820, 859, 1042
HpyCH4IV	ACGT	3 cut(s)	714, 997, 1010
HpyCH4V	TGCA	6 cut(s)	4, 137, 191, 203, 403, 463
HpyF10VI	GCNNNNNNNGC	6 cut(s)	367, 758, 772, 778, 781, 928
HpyF3I	CTNAG	4 cut(s)	25, 35, 86, 767
HpySE526I	ACGT	3 cut(s)	714, 997, 1010
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	238, 345, 361, 682
HspAI	GCGC	2 cut(s)	415, 1015
Ksp22I	TGATCA	2 cut(s)	178, 283
Kzo9I	GATC	3 cut(s)	178, 283, 1044
LmnI	GCTCC	3 cut(s)	582, 680, 829
Lsp1109I	GCAGC	3 cut(s)	447, 759, 793
LweI	GCATC	1 cut(s)	918
MaeI	CTAG	1 cut(s)	749
MaeII	ACGT	3 cut(s)	714, 997, 1010
MalI	GATC	3 cut(s)	180, 285, 1046
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	3 cut(s)	178, 283, 1044
MboII	GAAGA	2 cut(s)	449, 806
MhlI	GDGCHC	4 cut(s)	341, 834, 966, 978
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	204, 396, 801
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	3 cut(s)	155, 952, 974
MmeI	TCCRAC	3 cut(s)	55, 424, 1016
Mox20I	TGGCCA	1 cut(s)	660
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	2 cut(s)	429, 456
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	660
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	5 cut(s)	277, 362, 548, 579, 844
MspR9I	CCNGG	4 cut(s)	549, 580, 611, 627
MvaI	CCWGG	2 cut(s)	611, 627
MwoI	GCNNNNNNNGC	6 cut(s)	367, 758, 772, 778, 781, 928
NciI	CCSGG	2 cut(s)	549, 580
NdeII	GATC	3 cut(s)	178, 283, 1044
NlaIII	CATG	4 cut(s)	238, 345, 361, 682
NlaIV	GGNNCC	1 cut(s)	573
NotI	GCGGCCGC	1 cut(s)	616
NsbI	TGCGCA	1 cut(s)	1016
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	361
PasI	CCCWGGG	1 cut(s)	610
PfeI	GAWTC	1 cut(s)	537
PfoI	TCCNGGA	1 cut(s)	578
PinAI	ACCGGT	1 cut(s)	843
PkrI	GCNGC	6 cut(s)	462, 587, 617, 620, 774, 783
PleI	GAGTC	3 cut(s)	155, 951, 974
PpsI	GAGTC	3 cut(s)	155, 951, 974
Psp124BI	GAGCTC	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	609, 625
PspGI	CCWGG	2 cut(s)	609, 625
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	5 cut(s)	364, 572, 869, 991, 1024
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	834
SalI	GTCGAC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	429, 456
SatI	GCNGC	6 cut(s)	461, 586, 616, 619, 773, 782
Sau3AI	GATC	3 cut(s)	178, 283, 1044
Sau96I	GGNCC	5 cut(s)	364, 572, 869, 991, 1024
SchI	GAGTC	3 cut(s)	155, 952, 974
ScrFI	CCNGG	4 cut(s)	549, 580, 611, 627
SduI	GDGCHC	4 cut(s)	341, 834, 966, 978
SfaNI	GCATC	1 cut(s)	918
SfcI	CTRYAG	2 cut(s)	135, 858
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	428, 670
SmoI	CTYRAG	2 cut(s)	428, 670
Sse9I	AATT	3 cut(s)	204, 396, 801
SsiI	CCGC	5 cut(s)	315, 585, 606, 615, 619
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	834
StyD4I	CCNGG	4 cut(s)	547, 578, 609, 625
TaaI	ACNGT	6 cut(s)	293, 517, 736, 820, 859, 1042
TaiI	ACGT	3 cut(s)	717, 1000, 1013
TaqI	TCGA	5 cut(s)	130, 323, 813, 978, 1047
TasI	AATT	3 cut(s)	204, 396, 801
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	3 cut(s)	588, 618, 621
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	429, 456
Tru9I	TTAA	2 cut(s)	429, 456
TscAI	CASTG	2 cut(s)	520, 763
TseI	GCWGC	3 cut(s)	460, 772, 781
TspDTI	ATGAA	2 cut(s)	63, 695
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	2 cut(s)	520, 763
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	2 cut(s)	385, 766
XceI	RCATGY	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	1 cut(s)	749
ZraI	GACGTC	1 cut(s)	715
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.