Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8273227.1

Orthogroup ID

OG0029439

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 793

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8273227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 658 bp

atgataccgccggagcaggaaaacaccatgacaaacactactccaactaacaagtctagcatactctctaatgtaagcaggtctgagaattatcagaccggctgggttcatgccgaaccgtctgctggaactactaacggaagcccgcgtctggcaccggatgacatgccggaacaaccacgtccgagtacccctcatagagcttccgtcttgcgcgagtccctgcgccctgtgacacttaagttcgaagacgtcacctacagcattaagctggagccgacaaagggtagttgcgtcacttcatataatgagccaaagcaaacacgaaatctactgaatggggtgagtgggattgtgcgaccgggggagctcctcgcaatgctggggccctccggcagcggcaagaccactctcttgacggcactcggcggccgcttgccgggaaaaatctccggcaaagtgacctacaatggccagcatttctcaagctccatgaagcacaacaccggctttgtgacacaagatgatgttctatatcctcatctgactgtgctcgaaaccctaacatataccgcccttttgaggcttccaaagcagctgagcaaggaagagaaaaaagagcaggccgagacggttatggtggagctcgggttgaccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

8.61

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029439)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g04350
rosa_multiflora	Rmu_co8273227.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	2 cut(s)	148, 216
AciI	CCGC	6 cut(s)	8, 146, 399, 429, 433, 573
AcoI	YGGCCR	2 cut(s)	430, 472
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	5 cut(s)	125, 151, 284, 439, 582
AflII	CTTAAG	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	6 cut(s)	203, 271, 370, 489, 598, 646
AluI	AGCT	6 cut(s)	203, 271, 370, 489, 598, 646
Alw21I	GWGCWC	3 cut(s)	372, 555, 648
Alw26I	GTCTC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	4 cut(s)	386, 430, 472, 624
ApaI	GGGCCC	1 cut(s)	390
ApeKI	GCWGC	2 cut(s)	396, 595
AspLEI	GCGC	2 cut(s)	216, 228
AspS9I	GGNCC	2 cut(s)	386, 387
AsuC2I	CCSGG	2 cut(s)	363, 441
AsuHPI	GGTGA	2 cut(s)	247, 355
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	3 cut(s)	372, 390, 648
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	3 cut(s)	372, 555, 648
BbvI	GCAGC	2 cut(s)	408, 607
BceAI	ACGGC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcnI	CCSGG	2 cut(s)	363, 441
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	5 cut(s)	397, 400, 430, 433, 596
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	5 cut(s)	398, 401, 431, 434, 597
Bme1390I	CCNGG	2 cut(s)	363, 441
BmeT110I	CYCGRG	1 cut(s)	647
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	386, 387
BmiI	GGNNCC	4 cut(s)	156, 276, 387, 388
BmrFI	CCNGG	2 cut(s)	363, 441
BpiI	GAAGAC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	469
BpuMI	CCSGG	2 cut(s)	363, 441
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 151, 284, 439, 582
Bse118I	RCCGGY	2 cut(s)	98, 506
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	5 cut(s)	125, 151, 284, 439, 582
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	75, 590
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	390
BseX3I	CGGCCG	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	408, 607
BseYI	CCCAGC	2 cut(s)	102, 382
Bsh1236I	CGCG	2 cut(s)	148, 216
Bsh1285I	CGRYCG	2 cut(s)	362, 433
BshFI	GGCC	4 cut(s)	388, 432, 474, 626
BshNI	GGYRCC	1 cut(s)	154
BsiEI	CGRYCG	2 cut(s)	362, 433
BsiHKAI	GWGCWC	3 cut(s)	372, 555, 648
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	9 cut(s)	11, 99, 158, 170, 362, 393, 440, 453, 507
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	5 cut(s)	125, 151, 284, 439, 582
BsmAI	GTCTC	1 cut(s)	623
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	388, 432, 474, 626
BsoBI	CYCGRG	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	246
Bsp120I	GGGCCC	1 cut(s)	386
Bsp1286I	GDGCHC	4 cut(s)	372, 390, 555, 648
Bsp1720I	GCTNAGC	1 cut(s)	599
BspACI	CCGC	6 cut(s)	8, 146, 399, 429, 433, 573
BspANI	GGCC	4 cut(s)	388, 432, 474, 626
BspCNI	CTCAG	2 cut(s)	76, 591
BspFNI	CGCG	2 cut(s)	148, 216
BspLI	GGNNCC	4 cut(s)	156, 276, 387, 388
BspMI	ACCTGC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	2 cut(s)	98, 506
BssAI	RCCGGY	2 cut(s)	98, 506
BssECI	CCNNGG	1 cut(s)	362
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	120, 550, 634
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	4 cut(s)	146, 437, 476, 624
BstDEI	CTNAG	2 cut(s)	84, 599
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	2 cut(s)	148, 216
BstHHI	GCGC	2 cut(s)	216, 228
BstMAI	GTCTC	1 cut(s)	623
BstMCI	CGRYCG	2 cut(s)	362, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	361, 439
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	2 cut(s)	148, 216
BstV1I	GCAGC	2 cut(s)	408, 607
BstV2I	GAAGAC	1 cut(s)	255
BstZI	CGGCCG	1 cut(s)	430
BsuRI	GGCC	4 cut(s)	388, 432, 474, 626
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	4 cut(s)	146, 437, 476, 624
CciNI	GCGGCCGC	1 cut(s)	430
CfoI	GCGC	2 cut(s)	216, 228
Cfr10I	RCCGGY	2 cut(s)	98, 506
Cfr13I	GGNCC	2 cut(s)	386, 387
CseI	GACGC	2 cut(s)	137, 283
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	4 cut(s)	28, 110, 166, 493
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	84, 599
EaeI	YGGCCR	2 cut(s)	430, 472
EagI	CGGCCG	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Ecl136II	GAGCTC	2 cut(s)	370, 646
EclXI	CGGCCG	1 cut(s)	430
Eco24I	GRGCYC	3 cut(s)	372, 390, 648
Eco52I	CGGCCG	1 cut(s)	430
Eco53kI	GAGCTC	2 cut(s)	370, 646
Eco88I	CYCGRG	1 cut(s)	647
EcoICRI	GAGCTC	2 cut(s)	370, 646
EcoO109I	RGGNCCY	2 cut(s)	386, 387
EcoT38I	GRGCYC	3 cut(s)	372, 390, 648
Esp3I	CGTCTC	1 cut(s)	623
FaeI	CATG	4 cut(s)	31, 113, 169, 496
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	27, 109, 165, 492
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	397, 400, 430, 433, 596
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	3 cut(s)	372, 390, 648
Fsp4HI	GCNGC	5 cut(s)	397, 400, 430, 433, 596
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	2 cut(s)	215, 227
GluI	GCNGC	5 cut(s)	397, 400, 430, 433, 596
GsaI	CCCAGC	2 cut(s)	106, 386
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	4 cut(s)	388, 432, 474, 626
HapII	CCGG	9 cut(s)	11, 99, 158, 170, 362, 393, 440, 453, 507
HgaI	GACGC	2 cut(s)	137, 283
HhaI	GCGC	2 cut(s)	216, 228
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	31, 113, 169, 496
Hin6I	GCGC	2 cut(s)	214, 226
HinP1I	GCGC	2 cut(s)	214, 226
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	9 cut(s)	11, 99, 158, 170, 362, 393, 440, 453, 507
HphI	GGTGA	2 cut(s)	247, 355
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	4 cut(s)	85, 96, 186, 546
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	1 cut(s)	654
HpyCH4III	ACNGT	3 cut(s)	120, 550, 634
HpyCH4IV	ACGT	2 cut(s)	181, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	2 cut(s)	84, 599
HpySE526I	ACGT	2 cut(s)	181, 252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	31, 113, 169, 496
HspAI	GCGC	2 cut(s)	214, 226
LmnI	GCTCC	6 cut(s)	13, 274, 367, 375, 494, 643
Lsp1109I	GCAGC	2 cut(s)	408, 607
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	181, 252
MaeIII	GTNAC	5 cut(s)	232, 253, 295, 460, 514
MboII	GAAGA	2 cut(s)	260, 620
MhlI	GDGCHC	4 cut(s)	372, 390, 555, 648
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	204, 383, 400, 549, 576
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	2 cut(s)	240, 267
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	399, 598
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	9 cut(s)	11, 99, 158, 170, 362, 393, 440, 453, 507
MspR9I	CCNGG	2 cut(s)	363, 441
MvnI	CGCG	2 cut(s)	148, 216
MwoI	GCNNNNNNNGC	1 cut(s)	592
NciI	CCSGG	2 cut(s)	363, 441
NlaIII	CATG	4 cut(s)	31, 113, 169, 496
NlaIV	GGNNCC	4 cut(s)	156, 276, 387, 388
NmeAIII	GCCGAG	2 cut(s)	405, 652
NmuCI	GTSAC	5 cut(s)	232, 253, 295, 460, 514
NotI	GCGGCCGC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	246
PkrI	GCNGC	5 cut(s)	398, 401, 431, 434, 597
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp124BI	GAGCTC	2 cut(s)	372, 648
PspFI	CCCAGC	2 cut(s)	102, 382
PspN4I	GGNNCC	4 cut(s)	156, 276, 387, 388
PspOMI	GGGCCC	1 cut(s)	386
PspPI	GGNCC	2 cut(s)	386, 387
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SacI	GAGCTC	2 cut(s)	372, 648
SaqAI	TTAA	2 cut(s)	240, 267
SatI	GCNGC	5 cut(s)	397, 400, 430, 433, 596
Sau96I	GGNCC	2 cut(s)	386, 387
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	363, 441
SduI	GDGCHC	4 cut(s)	372, 390, 555, 648
SfcI	CTRYAG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	239, 484
SmoI	CTYRAG	2 cut(s)	239, 484
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	6 cut(s)	8, 146, 399, 429, 433, 573
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	2 cut(s)	372, 648
StyD4I	CCNGG	2 cut(s)	361, 439
TaaI	ACNGT	3 cut(s)	120, 550, 634
TaiI	ACGT	2 cut(s)	184, 255
TaqI	TCGA	2 cut(s)	246, 555
TasI	AATT	1 cut(s)	88
TauI	GCSGC	3 cut(s)	402, 432, 435
Tru1I	TTAA	2 cut(s)	240, 267
Tru9I	TTAA	2 cut(s)	240, 267
TseFI	GTSAC	5 cut(s)	232, 253, 295, 460, 514
TseI	GCWGC	2 cut(s)	396, 595
Tsp45I	GTSAC	5 cut(s)	232, 253, 295, 460, 514
TspDTI	ATGAA	3 cut(s)	98, 291, 509
TspGWI	ACGGA	2 cut(s)	153, 196
Vha464I	CTTAAG	1 cut(s)	239
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	57
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.