Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029440

Physical Location & Seq

Genomic Coordinates Forward (+)

3031927 .. 3033780

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGTGAAAGAGGGTATCGAAGATTGGCATCGAAAACAACAGGATATGGAGGTGAACAATCGAAAGGTTAAAGTACGTGATGGTAATGGGGCTTTCAATTATACTGCGTGGAGAAATCTGAGAGTGGGAGATATAGTGAAGGTAGAAAAGGATGAATTCTTTCCGACAGACCTCCTCTTGCTTTCATCCAGTTTTGACGATGCAATTTGCTATGTTGAGACCATGAACCTTGATGGGGAGACAAATTTAAAGTTAAAACAAGCGTTGGAAGTATCTTCATCCTTGCAGGAGGATTCTAACTTCAACGATTTTAGCGCCATTGTTAAATGTGAAGACCCGAATGCAAATTTGTACTCATTTGTTGGAACTATGGAGTTCGACAATGAACAATTTCCTGTCTCTCCTCAACAGCTTCTCCTGAGAGACTCTAAACTCAGAAATACAGACTACGTATATGGAGCTGTTATCTTCACTGGTCCTGACACAAAGGTTATTCAAAATTCTACCGCCCCTCCTTCAAAAAGAAGCAGAGTTGAGAGGAAGATGGATAAAATTATCTACTTCTTGTTCTGTGTTTTATTTATGATGGCATTTGTTGGGTCCATTTTCTTTGGGATTGCAACGAAAGATGACCTAAACAAAGGGACCATGAAAAGGTGGTATCTCAGGCCAGATAATTCAAAAATTTTCTTTGATGCTAAAAGAGCTCCGTATGCAGCAATTTACCACTTTTTGACTGCCCTAATGTTGTATAGCTACTTTATCCCCATCTCCTTGTATGTGTCCATAGAAATTGTCAAGGTTCTTCAGAGCATCTTCATCAATCGAGATGTTCACATGTACTATGAAGAGGCTGACAAACCAGCACACGCCCGTACCTCAAACTTGAACGAGGAACTTGGCCAAGTCGACACAATTCTCTCTGATAAGACGGGAACTTTGACCTGCAATTCAATGGAGTTCATTAAGTGTTCTGTGGCCGGGACAGCTTATGGCCGAGGCTTTACTGAGGTTGAGAGGGCTATGGGTCGACGAAATGGTTCACCATTGGTTCATCAACTAAGTGGAGGGGACAATCTCAAGGACTCTACTGAAACAAGGGCACCCATCAAAGGCTTTAATTTTACAGACAAAAGGGTCATGAATGGAAACTGGGTTAATGAGCCTAATGCAGAATACATCCAGAAGTTTTTCAGTTTATTAGCAATCTGTCATACAGCAATTCCGGAAGTTGATGAAGCTACTGGGAATGTTTCATATGAGGCTGAATCTCCTGATGAAGCAGCATTTGTGATTGCAGCAAGAGAACTTGGTTTTGAATTCTACAAAAGAACGCAAACAACCATATCACTGCGAGAGTTGGATCCAGTGTCTGGCAAAAAAGTTGAGAGGTTCGACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

468

Amino Acids

53.15

Weight (kDa)

5.36

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029440)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g04460
rosa_multiflora	Rmu_co8450211.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1136
Acc36I	ACCTGC	1 cut(s)	953
AccB1I	GGYRCC	1 cut(s)	1102
AccB7I	CCANNNNNTGG	1 cut(s)	1373
AccI	GTMKAC	2 cut(s)	909, 1030
AccIII	TCCGGA	1 cut(s)	1225
AciI	CCGC	1 cut(s)	507
AclWI	GGATC	2 cut(s)	1358, 1371
AcoI	YGGCCR	3 cut(s)	901, 978, 994
AcsI	RAATTY	6 cut(s)	155, 244, 346, 499, 684, 1319
AcuI	CTGAAG	1 cut(s)	791
AfaI	GTAC	4 cut(s)	75, 353, 842, 877
AfiI	CCNNNNNNNGG	4 cut(s)	235, 654, 1112, 1373
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	8 cut(s)	97, 304, 497, 519, 681, 889, 954, 1319
AluBI	AGCT	6 cut(s)	412, 461, 707, 756, 989, 1241
AluI	AGCT	6 cut(s)	412, 461, 707, 756, 989, 1241
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	4 cut(s)	212, 233, 403, 417
AlwI	GGATC	2 cut(s)	1358, 1371
AlwNI	CAGNNNCTG	1 cut(s)	1373
Aor13HI	TCCGGA	1 cut(s)	1225
AoxI	GGCC	4 cut(s)	668, 901, 978, 994
ApeKI	GCWGC	3 cut(s)	716, 1283, 1298
ApoI	RAATTY	6 cut(s)	155, 244, 346, 499, 684, 1319
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
Asp700I	GAANNNNTTC	4 cut(s)	159, 390, 1039, 1190
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	476, 600, 645
AsuC2I	CCSGG	1 cut(s)	982
AsuHPI	GGTGA	3 cut(s)	16, 64, 1035
AvaII	GGWCC	3 cut(s)	476, 600, 645
BaeGI	GKGCMC	1 cut(s)	1105
BaeI	ACNNNNGTAYC	2 cut(s)	859, 892
BalI	TGGCCA	1 cut(s)	903
BamHI	GGATCC	1 cut(s)	1363
BanI	GGYRCC	1 cut(s)	1102
BanII	GRGCYC	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	3 cut(s)	728, 1295, 1310
BccI	CCATC	6 cut(s)	74, 227, 538, 580, 776, 1115
BcnI	CCSGG	1 cut(s)	982
BcoDI	GTCTC	4 cut(s)	212, 233, 403, 417
BfoI	RGCGCY	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	953
BisI	GCNGC	3 cut(s)	717, 1284, 1299
BlsI	GCNGC	3 cut(s)	718, 1285, 1300
Bme1390I	CCNGG	1 cut(s)	982
Bme18I	GGWCC	3 cut(s)	476, 600, 645
BmgT120I	GGNCC	3 cut(s)	476, 600, 645
BmiI	GGNNCC	4 cut(s)	601, 646, 1104, 1365
BmrFI	CCNGG	1 cut(s)	982
BmrI	ACTGGG	2 cut(s)	1162, 1254
BmsI	GCATC	4 cut(s)	37, 190, 685, 822
BmuI	ACTGGG	2 cut(s)	1162, 1254
BpiI	GAAGAC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	1064
BpuMI	CCSGG	1 cut(s)	982
BsaAI	YACGTR	2 cut(s)	77, 451
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	997
BsaWI	WCCGGW	1 cut(s)	1225
BsaXI	ACNNNNNCTCC	6 cut(s)	120, 150, 399, 429, 496, 526
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 654, 1112, 1373
Bse1I	ACTGG	5 cut(s)	189, 478, 1157, 1249, 1367
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	1225
BseDI	CCNNGG	1 cut(s)	997
BseGI	GGATG	4 cut(s)	157, 185, 278, 1179
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	4 cut(s)	235, 654, 1112, 1373
BseMII	CTCAG	5 cut(s)	110, 410, 448, 679, 999
BseNI	ACTGG	5 cut(s)	189, 478, 1157, 1249, 1367
BseRI	GAGGAG	2 cut(s)	164, 393
BseSI	GKGCMC	1 cut(s)	1105
BseXI	GCAGC	3 cut(s)	728, 1295, 1310
BshFI	GGCC	4 cut(s)	670, 903, 980, 996
BshNI	GGYRCC	1 cut(s)	1102
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	2 cut(s)	981, 1226
BslFI	GGGAC	3 cut(s)	658, 997, 1085
BslI	CCNNNNNNNGG	4 cut(s)	235, 654, 1112, 1373
BsmAI	GTCTC	4 cut(s)	212, 233, 403, 417
BsmFI	GGGAC	3 cut(s)	658, 997, 1085
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	670, 903, 980, 996
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	709, 1105
Bsp13I	TCCGGA	1 cut(s)	1225
Bsp143I	GATC	1 cut(s)	1363
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	4 cut(s)	670, 903, 980, 996
BspCNI	CTCAG	5 cut(s)	111, 411, 447, 678, 1000
BspEI	TCCGGA	1 cut(s)	1225
BspHI	TCATGA	1 cut(s)	1140
BspLI	GGNNCC	4 cut(s)	601, 646, 1104, 1365
BspMI	ACCTGC	1 cut(s)	953
BspPI	GGATC	2 cut(s)	1358, 1371
BspT107I	GGYRCC	1 cut(s)	1102
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	5 cut(s)	189, 478, 1157, 1249, 1367
BssECI	CCNNGG	1 cut(s)	997
BssMI	GATC	1 cut(s)	1363
Bst6I	CTCTTC	1 cut(s)	843
BstBAI	YACGTR	2 cut(s)	77, 451
BstDEI	CTNAG	6 cut(s)	119, 419, 434, 665, 1008, 1061
BstF5I	GGATG	4 cut(s)	157, 185, 278, 1179
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	1366
BstMAI	GTCTC	4 cut(s)	212, 233, 403, 417
BstMBI	GATC	1 cut(s)	1363
BstMWI	GCNNNNNNNGC	3 cut(s)	704, 713, 986
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	980
BstSLI	GKGCMC	1 cut(s)	1105
BstSNI	TACGTA	1 cut(s)	451
BstV1I	GCAGC	3 cut(s)	728, 1295, 1310
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	1363
BstYI	RGATCY	1 cut(s)	1363
BsuRI	GGCC	4 cut(s)	670, 903, 980, 996
BtsCI	GGATG	4 cut(s)	157, 185, 278, 1179
BtsI	GCAGTG	1 cut(s)	1349
BtsIMutI	CAGTG	3 cut(s)	471, 1349, 1374
BveI	ACCTGC	1 cut(s)	953
CaiI	CAGNNNCTG	1 cut(s)	1373
CciI	TCATGA	1 cut(s)	1140
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	476, 600, 645
Csp6I	GTAC	4 cut(s)	74, 352, 841, 876
CviAII	CATG	4 cut(s)	223, 649, 838, 1141
CviQI	GTAC	4 cut(s)	74, 352, 841, 876
DdeI	CTNAG	6 cut(s)	119, 419, 434, 665, 1008, 1061
DpnI	GATC	1 cut(s)	1365
DpnII	GATC	1 cut(s)	1363
DraI	TTTAAA	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	1136
DseDI	GACNNNNNNGTC	1 cut(s)	1136
EaeI	YGGCCR	3 cut(s)	901, 978, 994
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Ecl136II	GAGCTC	1 cut(s)	707
Eco105I	TACGTA	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	709
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	3 cut(s)	476, 600, 645
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	707
EcoRI	GAATTC	2 cut(s)	155, 1319
EcoT38I	GRGCYC	1 cut(s)	709
FaeI	CATG	4 cut(s)	226, 652, 841, 1144
FaqI	GGGAC	3 cut(s)	658, 997, 1085
FatI	CATG	4 cut(s)	222, 648, 837, 1140
FauNDI	CATATG	1 cut(s)	1258
FblI	GTMKAC	2 cut(s)	909, 1030
Fnu4HI	GCNGC	3 cut(s)	717, 1284, 1299
FokI	GGATG	4 cut(s)	164, 172, 265, 1166
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	3 cut(s)	717, 1284, 1299
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	717, 1284, 1299
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	670, 903, 980, 996
HapII	CCGG	2 cut(s)	981, 1226
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	226, 652, 841, 1144
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	2 cut(s)	910, 1031
HindII	GTYRAC	2 cut(s)	910, 1031
HinfI	GANTC	4 cut(s)	293, 425, 1085, 1268
HpaII	CCGG	2 cut(s)	981, 1226
HphI	GGTGA	3 cut(s)	16, 64, 1035
Hpy166II	GTNNAC	5 cut(s)	55, 835, 910, 1031, 1043
Hpy188I	TCNGA	5 cut(s)	120, 165, 437, 810, 925
Hpy188III	TCNNGA	7 cut(s)	418, 479, 827, 1141, 1183, 1226, 1274
Hpy8I	GTNNAC	5 cut(s)	55, 835, 910, 1031, 1043
Hpy99I	CGWCG	2 cut(s)	1035, 1400
HpyAV	CCTTC	2 cut(s)	133, 525
HpyCH4IV	ACGT	3 cut(s)	76, 450, 1398
HpyCH4V	TGCA	8 cut(s)	203, 286, 344, 620, 716, 948, 1172, 1298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	704, 713, 986
HpyF3I	CTNAG	6 cut(s)	119, 419, 434, 665, 1008, 1061
HpySE526I	ACGT	3 cut(s)	76, 450, 1398
Hsp92II	CATG	4 cut(s)	226, 652, 841, 1144
HspAI	GCGC	1 cut(s)	315
Kpn2I	TCCGGA	1 cut(s)	1225
Kzo9I	GATC	1 cut(s)	1363
LmnI	GCTCC	2 cut(s)	458, 712
Lsp1109I	GCAGC	3 cut(s)	728, 1295, 1310
LweI	GCATC	4 cut(s)	37, 190, 685, 822
MaeII	ACGT	3 cut(s)	76, 450, 1398
MalI	GATC	1 cut(s)	1365
MboI	GATC	1 cut(s)	1363
MboII	GAAGA	8 cut(s)	32, 267, 344, 460, 553, 797, 808, 860
MflI	RGATCY	1 cut(s)	1363
MhlI	GDGCHC	2 cut(s)	709, 1105
MlsI	TGGCCA	1 cut(s)	903
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	2 cut(s)	419, 1079
MmeI	TCCRAC	4 cut(s)	188, 246, 343, 1341
Mox20I	TGGCCA	1 cut(s)	903
MroI	TCCGGA	1 cut(s)	1225
MroXI	GAANNNNTTC	4 cut(s)	159, 390, 1039, 1190
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	7 cut(s)	69, 248, 254, 324, 966, 1119, 1158
Msp20I	TGGCCA	1 cut(s)	903
MspI	CCGG	2 cut(s)	981, 1226
MspR9I	CCNGG	1 cut(s)	982
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	704, 713, 986
NciI	CCSGG	1 cut(s)	982
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	1 cut(s)	1363
NlaIII	CATG	4 cut(s)	226, 652, 841, 1144
NlaIV	GGNNCC	4 cut(s)	601, 646, 1104, 1365
NmeAIII	GCCGAG	1 cut(s)	1022
NspI	RCATGY	1 cut(s)	841
PagI	TCATGA	1 cut(s)	1140
PciI	ACATGT	1 cut(s)	837
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	4 cut(s)	159, 390, 1039, 1190
PfeI	GAWTC	2 cut(s)	293, 1268
PflMI	CCANNNNNTGG	1 cut(s)	1373
PkrI	GCNGC	3 cut(s)	718, 1285, 1300
PleI	GAGTC	2 cut(s)	419, 1079
PpsI	GAGTC	2 cut(s)	419, 1079
Ppu21I	YACGTR	2 cut(s)	77, 451
PscI	ACATGT	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	709
PspN4I	GGNNCC	4 cut(s)	601, 646, 1104, 1365
PspPI	GGNCC	3 cut(s)	476, 600, 645
PstNI	CAGNNNCTG	1 cut(s)	1373
PsuI	RGATCY	1 cut(s)	1363
RsaI	GTAC	4 cut(s)	75, 353, 842, 877
RsaNI	GTAC	4 cut(s)	74, 352, 841, 876
SacI	GAGCTC	1 cut(s)	709
SalI	GTCGAC	2 cut(s)	908, 1029
SaqAI	TTAA	7 cut(s)	69, 248, 254, 324, 966, 1119, 1158
SatI	GCNGC	3 cut(s)	717, 1284, 1299
Sau3AI	GATC	1 cut(s)	1363
Sau96I	GGNCC	3 cut(s)	476, 600, 645
SchI	GAGTC	2 cut(s)	419, 1079
ScrFI	CCNGG	1 cut(s)	982
SduI	GDGCHC	2 cut(s)	709, 1105
SfaNI	GCATC	4 cut(s)	37, 190, 685, 822
SinI	GGWCC	3 cut(s)	476, 600, 645
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
SnaBI	TACGTA	1 cut(s)	451
SsiI	CCGC	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	709
StyD4I	CCNGG	1 cut(s)	980
TaiI	ACGT	3 cut(s)	79, 453, 1401
TaqI	TCGA	8 cut(s)	18, 31, 61, 378, 826, 909, 1030, 1395
TatI	WGTACW	2 cut(s)	351, 840
TfiI	GAWTC	2 cut(s)	293, 1268
Tru1I	TTAA	7 cut(s)	69, 248, 254, 324, 966, 1119, 1158
Tru9I	TTAA	7 cut(s)	69, 248, 254, 324, 966, 1119, 1158
TscAI	CASTG	3 cut(s)	478, 1356, 1374
TseI	GCWGC	3 cut(s)	716, 1283, 1298
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	3 cut(s)	478, 1356, 1374
Van91I	CCANNNNNTGG	1 cut(s)	1373
VpaK11BI	GGWCC	3 cut(s)	476, 600, 645
XapI	RAATTY	6 cut(s)	155, 244, 346, 499, 684, 1319
XceI	RCATGY	1 cut(s)	841
XmiI	GTMKAC	2 cut(s)	909, 1030
XmnI	GAANNNNTTC	4 cut(s)	159, 390, 1039, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.