Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450211.1

Orthogroup ID

OG0029440

Physical Location & Seq

Genomic Coordinates Reverse (-)

464 .. 1648

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450211.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgaaccttgatggagaaacaaatttaaaattgaagcatgcactggaggcgacatcccctcttcaagatgaaaattccttggaaagatttagggcagtgatcaagtgtgaggacccaaatgaaaatctatattcatttgttgggactttgttctataacggcagagaatacccactttccttgcaacagatgctcctaagagactctaagctgaaaaatacagaatatgtctatggagttgttgttttcactgggcatgacacaaaagtcatggaaaatgctacagatcctccttcaaagagaagtaaaattgagaggaaaatggataagataatctacatccttttcagtactctatttgtgatagcttttgttggatctgtcttttttggaattgataccaagaaagattatagcggtggaaagatgagaaggtggtatcttcgtccagatgattccgctgtgtattatgaccccaaaaggccagaaattgcagctattttgcattttctgacagctcttatgttgtatggatatctgataccaatatctttatatgtttcaattgagatggtgaaggtattacagagtattttcattaaccgagatcaagatatgtactatgaggaaacagataggccagctcatgcacgcacctctaatctgaatgaggaacttggccagattgatatgatactgtctgacaaaactggtacattgacatgcaactccatggagtttattaaatgttcgatagcaggcactgcttatggccatggtaagacagaagtggaaatggcactggcaaacagaaggaacggagtggctgaaactggtcatatatcatctgatgtggtagagcatagtactggtgaagctgatagctctcgaaagtcaattaagggtttcaacttcagggacgagcgcatcatgaatgggcactgggttaatgaacctcattcagataccatccagaaattccttcgggttttagcaatctgtcatacagccatacctgttgtggataaagaatcaggagaaatatcctatgaagctgagtcaccagatgaagcagcttttgtcatagctgccagggagctcggctttgagttttttgaaaggacacaaacgagcatatcattgcatgagttagattatgagactggacaaaaggttgacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

394

Amino Acids

44.85

Weight (kDa)

5.34

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029440)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g04460
rosa_multiflora	Rmu_co8450211.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AciI	CCGC	2 cut(s)	417, 459
AclWI	GGATC	2 cut(s)	281, 385
AcoI	YGGCCR	2 cut(s)	679, 772
AcsI	RAATTY	3 cut(s)	22, 73, 977
AcuI	CTGAAG	1 cut(s)	898
AfaI	GTAC	4 cut(s)	352, 620, 715, 868
AgsI	TTSAA	6 cut(s)	34, 65, 297, 564, 910, 1118
AjnI	CCWGG	1 cut(s)	1091
Alw21I	GWGCWC	1 cut(s)	1101
Alw26I	GTCTC	2 cut(s)	195, 1154
AlwI	GGATC	2 cut(s)	281, 385
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	4 cut(s)	482, 638, 679, 772
ApeKI	GCWGC	3 cut(s)	494, 1073, 1088
ApoI	RAATTY	3 cut(s)	22, 73, 977
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	586, 884, 1053
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	942
BalI	TGGCCA	2 cut(s)	681, 774
BanII	GRGCYC	1 cut(s)	1101
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	3 cut(s)	506, 1075, 1085
BccI	CCATC	3 cut(s)	5, 565, 977
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	1093
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	195, 1154
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	495, 1074, 1089
BlsI	GCNGC	3 cut(s)	496, 1075, 1090
BmcAI	AGTACT	2 cut(s)	352, 868
Bme1390I	CCNGG	1 cut(s)	1093
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	1093
BmrI	ACTGGG	2 cut(s)	261, 952
BmsI	GCATC	2 cut(s)	180, 936
BmuI	ACTGGG	2 cut(s)	261, 952
BpmI	CTGGAG	1 cut(s)	65
BsaJI	CCNNGG	4 cut(s)	78, 732, 775, 1092
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 228, 258, 274, 304
Bse1I	ACTGG	8 cut(s)	48, 256, 715, 807, 838, 874, 947, 1168
Bse3DI	GCAATG	1 cut(s)	1139
BseBI	CCWGG	1 cut(s)	1093
BseDI	CCNNGG	4 cut(s)	78, 732, 775, 1092
BseGI	GGATG	3 cut(s)	53, 339, 969
BseMI	GCAATG	1 cut(s)	1139
BseMII	CTCAG	1 cut(s)	1047
BseNI	ACTGG	8 cut(s)	48, 256, 715, 807, 838, 874, 947, 1168
BseSI	GKGCMC	1 cut(s)	942
BseXI	GCAGC	3 cut(s)	506, 1075, 1085
BshFI	GGCC	4 cut(s)	484, 640, 681, 774
BsiHKAI	GWGCWC	1 cut(s)	1101
BslFI	GGGAC	2 cut(s)	157, 932
BsmAI	GTCTC	2 cut(s)	195, 1154
BsmFI	GGGAC	2 cut(s)	157, 932
BsnI	GGCC	4 cut(s)	484, 640, 681, 774
Bsp1286I	GDGCHC	2 cut(s)	942, 1101
Bsp143I	GATC	4 cut(s)	99, 286, 377, 607
Bsp19I	CCATGG	2 cut(s)	732, 775
BspACI	CCGC	2 cut(s)	417, 459
BspANI	GGCC	4 cut(s)	484, 640, 681, 774
BspCNI	CTCAG	1 cut(s)	1048
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	281, 385
BsrDI	GCAATG	1 cut(s)	1139
BsrI	ACTGG	8 cut(s)	48, 256, 715, 807, 838, 874, 947, 1168
BssECI	CCNNGG	4 cut(s)	78, 732, 775, 1092
BssMI	GATC	4 cut(s)	99, 286, 377, 607
BssT1I	CCWWGG	3 cut(s)	78, 732, 775
Bst2UI	CCWGG	1 cut(s)	1093
Bst4CI	ACNGT	1 cut(s)	699
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	2 cut(s)	190, 764
BstC8I	GCNNGC	4 cut(s)	39, 642, 652, 760
BstDEI	CTNAG	3 cut(s)	197, 207, 1056
BstDSI	CCRYGG	2 cut(s)	732, 775
BstF5I	GGATG	3 cut(s)	53, 339, 969
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	4 cut(s)	102, 289, 380, 610
BstMAI	GTCTC	2 cut(s)	195, 1154
BstMBI	GATC	4 cut(s)	99, 286, 377, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 190, 764
BstNI	CCWGG	1 cut(s)	1093
BstNSI	RCATGY	2 cut(s)	41, 726
BstSCI	CCNGG	1 cut(s)	1091
BstSFI	CTRYAG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	942
BstV1I	GCAGC	3 cut(s)	506, 1075, 1085
BstX2I	RGATCY	2 cut(s)	286, 377
BstYI	RGATCY	2 cut(s)	286, 377
BsuRI	GGCC	4 cut(s)	484, 640, 681, 774
BtgI	CCRYGG	2 cut(s)	732, 775
BtsCI	GGATG	3 cut(s)	53, 339, 969
BtsI	GCAGTG	2 cut(s)	102, 762
BtsIMutI	CAGTG	6 cut(s)	41, 102, 249, 762, 800, 940
Cac8I	GCNNGC	4 cut(s)	39, 642, 652, 760
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	1 cut(s)	927
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	351, 619, 714, 867
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	9 cut(s)	38, 257, 271, 647, 723, 733, 776, 931, 1145
CviQI	GTAC	4 cut(s)	351, 619, 714, 867
DdeI	CTNAG	3 cut(s)	197, 207, 1056
DpnI	GATC	4 cut(s)	101, 288, 379, 609
DpnII	GATC	4 cut(s)	99, 286, 377, 607
DraI	TTTAAA	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	679, 772
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	1099
Eco130I	CCWWGG	3 cut(s)	78, 732, 775
Eco24I	GRGCYC	1 cut(s)	1101
Eco32I	GATATC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	1099
Eco57I	CTGAAG	1 cut(s)	898
EcoICRI	GAGCTC	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	1091
EcoRV	GATATC	1 cut(s)	536
EcoT14I	CCWWGG	3 cut(s)	78, 732, 775
EcoT38I	GRGCYC	1 cut(s)	1101
ErhI	CCWWGG	3 cut(s)	78, 732, 775
FaeI	CATG	9 cut(s)	41, 260, 274, 650, 726, 736, 779, 934, 1148
FaqI	GGGAC	2 cut(s)	157, 932
FatI	CATG	9 cut(s)	37, 256, 270, 646, 722, 732, 775, 930, 1144
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	495, 1074, 1089
FokI	GGATG	3 cut(s)	40, 326, 956
FriOI	GRGCYC	1 cut(s)	1101
Fsp4HI	GCNGC	3 cut(s)	495, 1074, 1089
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	3 cut(s)	495, 1074, 1089
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	484, 640, 681, 774
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	9 cut(s)	41, 260, 274, 650, 726, 736, 779, 934, 1148
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HincII	GTYRAC	1 cut(s)	1177
HindII	GTYRAC	1 cut(s)	1177
HinfI	GANTC	4 cut(s)	203, 455, 1031, 1058
HphI	GGTGA	3 cut(s)	586, 884, 1053
Hpy166II	GTNNAC	1 cut(s)	1177
Hpy188I	TCNGA	6 cut(s)	513, 540, 666, 703, 850, 964
Hpy188III	TCNNGA	7 cut(s)	65, 449, 611, 888, 931, 973, 1035
Hpy8I	GTNNAC	1 cut(s)	1177
HpyAV	CCTTC	5 cut(s)	303, 426, 571, 807, 992
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4V	TGCA	7 cut(s)	41, 184, 494, 505, 650, 726, 1144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 190, 764
HpyF3I	CTNAG	3 cut(s)	197, 207, 1056
Hsp92II	CATG	9 cut(s)	41, 260, 274, 650, 726, 736, 779, 934, 1148
HspAI	GCGC	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	99, 286, 377, 607
LmnI	GCTCC	2 cut(s)	198, 1096
Lsp1109I	GCAGC	3 cut(s)	506, 1075, 1085
LweI	GCATC	2 cut(s)	180, 936
MaeIII	GTNAC	1 cut(s)	1059
MalI	GATC	4 cut(s)	101, 288, 379, 609
MboI	GATC	4 cut(s)	99, 286, 377, 607
MboII	GAAGA	2 cut(s)	53, 434
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	286, 377
MhlI	GDGCHC	2 cut(s)	942, 1101
MlsI	TGGCCA	2 cut(s)	681, 774
MluCI	AATT	9 cut(s)	22, 29, 73, 309, 393, 489, 564, 897, 977
MluNI	TGGCCA	2 cut(s)	681, 774
MlyI	GAGTC	2 cut(s)	197, 1067
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	9 cut(s)	40, 69, 103, 300, 309, 619, 664, 667, 966
Mox20I	TGGCCA	2 cut(s)	681, 774
MscI	TGGCCA	2 cut(s)	681, 774
MseI	TTAA	5 cut(s)	26, 600, 744, 900, 948
MslI	CAYNNNNRTG	1 cut(s)	721
Msp20I	TGGCCA	2 cut(s)	681, 774
MspA1I	CMGCKG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	1093
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	1093
MwoI	GCNNNNNNNGC	3 cut(s)	47, 190, 764
NcoI	CCATGG	2 cut(s)	732, 775
NdeII	GATC	4 cut(s)	99, 286, 377, 607
NlaIII	CATG	9 cut(s)	41, 260, 274, 650, 726, 736, 779, 934, 1148
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	1080
NmuCI	GTSAC	1 cut(s)	1059
NspI	RCATGY	2 cut(s)	41, 726
PaeI	GCATGC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	930
PfeI	GAWTC	2 cut(s)	455, 1031
PkrI	GCNGC	3 cut(s)	496, 1075, 1090
PleI	GAGTC	2 cut(s)	197, 1066
PpsI	GAGTC	2 cut(s)	197, 1066
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	1101
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	1091
PspGI	CCWGG	1 cut(s)	1091
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	286, 377
RsaI	GTAC	4 cut(s)	352, 620, 715, 868
RsaNI	GTAC	4 cut(s)	351, 619, 714, 867
RseI	CAYNNNNRTG	1 cut(s)	721
SacI	GAGCTC	1 cut(s)	1101
SaqAI	TTAA	5 cut(s)	26, 600, 744, 900, 948
SatI	GCNGC	3 cut(s)	495, 1074, 1089
Sau3AI	GATC	4 cut(s)	99, 286, 377, 607
Sau96I	GGNCC	1 cut(s)	112
ScaI	AGTACT	2 cut(s)	352, 868
SchI	GAGTC	2 cut(s)	197, 1067
ScrFI	CCNGG	1 cut(s)	1093
SduI	GDGCHC	2 cut(s)	942, 1101
SfaNI	GCATC	2 cut(s)	180, 936
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	721
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	9 cut(s)	22, 29, 73, 309, 393, 489, 564, 897, 977
SsiI	CCGC	2 cut(s)	417, 459
SstI	GAGCTC	1 cut(s)	1101
StyD4I	CCNGG	1 cut(s)	1091
StyI	CCWWGG	3 cut(s)	78, 732, 775
TaaI	ACNGT	1 cut(s)	699
TaqI	TCGA	2 cut(s)	752, 889
TasI	AATT	9 cut(s)	22, 29, 73, 309, 393, 489, 564, 897, 977
TatI	WGTACW	3 cut(s)	350, 618, 866
TfiI	GAWTC	2 cut(s)	455, 1031
Tru1I	TTAA	5 cut(s)	26, 600, 744, 900, 948
Tru9I	TTAA	5 cut(s)	26, 600, 744, 900, 948
TscAI	CASTG	6 cut(s)	48, 102, 256, 769, 807, 947
TseFI	GTSAC	1 cut(s)	1059
TseI	GCWGC	3 cut(s)	494, 1073, 1088
Tsp45I	GTSAC	1 cut(s)	1059
TspDTI	ATGAA	9 cut(s)	17, 84, 123, 135, 586, 947, 966, 1065, 1083
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	6 cut(s)	48, 102, 256, 769, 807, 947
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	3 cut(s)	22, 73, 977
XceI	RCATGY	2 cut(s)	41, 726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
ZrmI	AGTACT	2 cut(s)	352, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.