Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029225

Physical Location & Seq

Genomic Coordinates Reverse (-)

11056107 .. 11056460

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCACCACTAGGATCTAATTCAGAAATTTCACGGCAAATAGACTTTACCTTGTGGAAATACTGCGCAATCGTCATGTCCCTTTGGGCCACTGATAACAACTTGTTCTCGAGAAGCTGCAGTCTTGTATCGTTCCTCTTTGAAAAGAGTGTGGCGAAGGTGTCCCACGCTTCTTTTGGTGTCTTGGCCTTCCGTATGTGCTCTAACATGTCATCTTCAACTGTAGTTTTTAAGGCAAACATGGCCTTACCTGCCTTGATCTTCCACTTCCTCAAAGCGCCGCTGGTGTCTTCTTCTGGCTGCGTAACTTCATTACCGCCGACGACATCCCAAAGATCTTGGCCTTGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006417 GO:0006450 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031982 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

118

Amino Acids

12.85

Weight (kDa)

9.45

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029225)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g24460 pycom13g15190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	281, 317
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	143, 219
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	4 cut(s)	87, 186, 243, 341
ApeKI	GCWGC	2 cut(s)	117, 300
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	68, 280
AspS9I	GGNCC	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	104, 287
BceAI	ACGGC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	2 cut(s)	118, 222
BfoI	RGCGCY	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	3 cut(s)	118, 281, 301
BlsI	GCNGC	3 cut(s)	119, 282, 302
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	282
BseGI	GGATG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	104, 287
BshFI	GGCC	4 cut(s)	89, 188, 245, 343
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	64, 148
BsmFI	GGGAC	2 cut(s)	64, 148
BsnI	GGCC	4 cut(s)	89, 188, 245, 343
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	14, 258, 335
BspACI	CCGC	2 cut(s)	281, 317
BspANI	GGCC	4 cut(s)	89, 188, 245, 343
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	3 cut(s)	14, 258, 335
Bst4CI	ACNGT	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	68, 280
BstKTI	GATC	3 cut(s)	17, 261, 338
BstMBI	GATC	3 cut(s)	14, 258, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstNSI	RCATGY	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	118, 222
BstV1I	GCAGC	2 cut(s)	104, 287
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	14, 335
BstYI	RGATCY	2 cut(s)	14, 335
BsuRI	GGCC	4 cut(s)	89, 188, 245, 343
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	259
CfoI	GCGC	2 cut(s)	68, 280
Cfr13I	GGNCC	1 cut(s)	87
CviAII	CATG	3 cut(s)	76, 208, 241
CviJI	RGCY	6 cut(s)	89, 117, 188, 245, 300, 343
CviKI_1	RGCY	6 cut(s)	89, 117, 188, 245, 300, 343
DpnI	GATC	3 cut(s)	16, 260, 337
DpnII	GATC	3 cut(s)	14, 258, 335
Eco88I	CYCGRG	1 cut(s)	109
FaeI	CATG	3 cut(s)	79, 211, 244
FaiI	YATR	4 cut(s)	77, 197, 209, 242
FaqI	GGGAC	2 cut(s)	64, 148
FatI	CATG	3 cut(s)	75, 207, 240
Fnu4HI	GCNGC	3 cut(s)	118, 281, 301
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	118, 281, 301
FspBI	CTAG	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	2 cut(s)	67, 279
GluI	GCNGC	3 cut(s)	118, 281, 301
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	4 cut(s)	89, 188, 245, 343
HhaI	GCGC	2 cut(s)	68, 280
Hin1II	CATG	3 cut(s)	79, 211, 244
Hin6I	GCGC	2 cut(s)	66, 278
HinP1I	GCGC	2 cut(s)	66, 278
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	109, 111
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	151, 199
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
Hsp92II	CATG	3 cut(s)	79, 211, 244
HspAI	GCGC	2 cut(s)	66, 278
Kzo9I	GATC	3 cut(s)	14, 258, 335
LpnPI	CCDG	3 cut(s)	264, 269, 282
Lsp1109I	GCAGC	2 cut(s)	104, 287
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	3 cut(s)	16, 260, 337
MboI	GATC	3 cut(s)	14, 258, 335
MboII	GAAGA	4 cut(s)	207, 253, 282, 285
MflI	RGATCY	2 cut(s)	14, 335
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	19, 27
MnlI	CCTC	2 cut(s)	146, 281
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NdeII	GATC	3 cut(s)	14, 258, 335
NlaIII	CATG	3 cut(s)	79, 211, 244
NlaIV	GGNNCC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	67
NspI	RCATGY	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	109
PciI	ACATGT	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	119, 282, 302
PscI	ACATGT	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	14, 335
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	118, 281, 301
Sau3AI	GATC	3 cut(s)	14, 258, 335
Sau96I	GGNCC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	53, 119, 162, 253, 353
SfcI	CTRYAG	2 cut(s)	118, 222
Sfr274I	CTCGAG	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	19, 27
SsiI	CCGC	2 cut(s)	281, 317
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	19, 27
TauI	GCSGC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	117, 300
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.