pycom13g15790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0029442
Physical Location & Seq
Forward (+)
11570972 .. 11571411
440 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15790.2

Sequence Viewer

Length: 390 bp
ATGCCGGAGAAGGGACTGGGCTGGCCACCATCGCAGCCGTGGACGGCGAGTACGAGGTTGGGTCCTTTGCTTCAATGGCGAGTTGGGTTGTTAACGGCGGCGGTCCTCGTCGGAATGGTGGTAGTTTGGAGCGTCGATGCCGGAACTATGCAGAACTTCGTCGACGCTACAAGGACCCGCCAAGCTTACCTCACCACAAAGGTTAGTGCTTTAGCTAATCTCGCCCAAACCCATCAAAATATCGACGTCAAATCGTTCGACATTGCGGTTAATCAGAACCAGAACCAGACCACTCCAACCCAGAAGCCAAATCAACCAGACCAATATGACCCAGAACCAAATCAGTGCGACCCAGTTCAAAACCCACTTGGATTCTCAGAACCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.2

Weight (kDa)

5.11

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029442)

Species Orthologous Gene IDs
pyrus_communis pycom13g15790
rosa_multiflora Rmu_ssc0000369.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 162
AciI CCGC 4 cut(s) 98, 101, 178, 266
AcoI YGGCCR 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 74, 359
AluBI AGCT 2 cut(s) 185, 215
AluI AGCT 2 cut(s) 185, 215
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 62, 103, 174
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 3 cut(s) 62, 103, 174
BalI TGGCCA 1 cut(s) 25
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 37, 240
BceAI ACGGC 3 cut(s) 22, 60, 111
BisI GCNGC 2 cut(s) 35, 99
BlsI GCNGC 2 cut(s) 36, 100
Bme18I GGWCC 3 cut(s) 62, 103, 174
BmgT120I GGNCC 3 cut(s) 62, 103, 174
BmiI GGNNCC 2 cut(s) 63, 176
BmrI ACTGGG 2 cut(s) 26, 347
BmsI GCATC 1 cut(s) 127
BmuI ACTGGG 2 cut(s) 26, 347
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 21, 353
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 21, 353
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 5, 141
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 25
BspACI CCGC 4 cut(s) 98, 101, 178, 266
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 63, 176
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 21, 353
BssECI CCNNGG 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 38
BstMWI GCNNNNNNNGC 3 cut(s) 31, 76, 221
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 62, 103, 174
CseI GACGC 2 cut(s) 121, 173
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 6 cut(s) 21, 25, 37, 185, 215, 307
CviKI_1 RGCY 6 cut(s) 21, 25, 37, 185, 215, 307
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 62, 103, 174
EcoO109I RGGNCCY 2 cut(s) 62, 174
FaiI YATR 2 cut(s) 149, 327
FaqI GGGAC 1 cut(s) 27
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 35, 99
Fsp4HI GCNGC 2 cut(s) 35, 99
GluI GCNGC 2 cut(s) 35, 99
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 5, 141
HgaI GACGC 2 cut(s) 121, 173
Hin1I GRCGYC 1 cut(s) 246
HincII GTYRAC 2 cut(s) 93, 163
HindII GTYRAC 2 cut(s) 93, 163
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 1 cut(s) 372
HpaI GTTAAC 1 cut(s) 93
HpaII CCGG 2 cut(s) 5, 141
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 3 cut(s) 42, 93, 163
Hpy188I TCNGA 3 cut(s) 113, 276, 379
Hpy8I GTNNAC 3 cut(s) 42, 93, 163
Hpy99I CGWCG 5 cut(s) 113, 137, 164, 167, 248
HpyAV CCTTC 1 cut(s) 4
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 76, 221
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 1 cut(s) 385
MluNI TGGCCA 1 cut(s) 25
MmeI TCCRAC 2 cut(s) 91, 320
MnlI CCTC 3 cut(s) 48, 116, 200
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 3 cut(s) 92, 270, 388
Msp20I TGGCCA 1 cut(s) 25
MspI CCGG 2 cut(s) 5, 141
MwoI GCNNNNNNNGC 3 cut(s) 31, 76, 221
NlaIV GGNNCC 2 cut(s) 63, 176
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 1 cut(s) 372
PkrI GCNGC 2 cut(s) 36, 100
PpuMI RGGWCCY 2 cut(s) 62, 174
Psp5II RGGWCCY 2 cut(s) 62, 174
PspN4I GGNNCC 2 cut(s) 63, 176
PspPI GGNCC 3 cut(s) 62, 103, 174
PspPPI RGGWCCY 2 cut(s) 62, 174
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 92, 270, 388
SatI GCNGC 2 cut(s) 35, 99
Sau96I GGNCC 3 cut(s) 62, 103, 174
SetI ASST 6 cut(s) 59, 187, 192, 204, 217, 249
SfaNI GCATC 1 cut(s) 127
SgrDI CGTCGACG 1 cut(s) 161
SinI GGWCC 3 cut(s) 62, 103, 174
Sse9I AATT 1 cut(s) 385
SsiI CCGC 4 cut(s) 98, 101, 178, 266
TaiI ACGT 1 cut(s) 249
TaqI TCGA 4 cut(s) 135, 162, 243, 258
TasI AATT 1 cut(s) 385
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 3 cut(s) 92, 270, 388
Tru9I TTAA 3 cut(s) 92, 270, 388
TscAI CASTG 1 cut(s) 350
TseI GCWGC 1 cut(s) 34
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 62, 103, 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 162
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.