Rmu_ssc0000369.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000369.1
Physical Location & Seq
Reverse (-)
2 .. 934
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000369.1_g000001.1.cds

Sequence Viewer

Length: 475 bp
atggggggcttccttactctgttcaaattgacccacatacccctacctcgcacacaccgacgctcctcccaattttgtccccttgtcggtgcattcctcatctacctcaccgccactcccatcactacaccgagggcatttcggtccacccacattaaaactaaccccagtaggctagtactaatcaaacacttacccatagttttagtgatgccggagaagggagctatgagctggccttcatcgtcaaaacaaagtcctctgcttcaatggcgacttgcgttacttacagctctggttcttgtgggaatggtgttgatttggagcatggatgcaacaactatgaagaacttggttgaagctaccaagtctcagcaaggttatttcactacaaaggttagtacttttgctaataatcttgctcagaaccatgagaatgttgaagttagcacagcccccagtgtagttaatcaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

10.55

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029442)

Species Orthologous Gene IDs
pyrus_communis pycom13g15790
rosa_multiflora Rmu_ssc0000369.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AfaI GTAC 2 cut(s) 180, 403
AfiI CCNNNNNNNGG 2 cut(s) 86, 221
AgsI TTSAA 4 cut(s) 25, 269, 359, 443
AluBI AGCT 4 cut(s) 227, 234, 293, 362
AluI AGCT 4 cut(s) 227, 234, 293, 362
Alw26I GTCTC 1 cut(s) 375
AoxI GGCC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 144
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 176
BmcAI AGTACT 2 cut(s) 180, 403
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmrI ACTGGG 2 cut(s) 162, 453
BmsI GCATC 2 cut(s) 201, 322
BmuI ACTGGG 2 cut(s) 162, 453
BsaJI CCNNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 100, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 221
Bse1I ACTGG 2 cut(s) 168, 459
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 86, 221
BseMII CTCAG 2 cut(s) 386, 437
BseNI ACTGG 2 cut(s) 168, 459
BseRI GAGGAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 86, 221
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 1 cut(s) 238
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 385, 436
BsrI ACTGG 2 cut(s) 168, 459
BssECI CCNNGG 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 372, 423
BstF5I GGATG 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 179, 402
CviAII CATG 2 cut(s) 328, 431
CviJI RGCY 8 cut(s) 9, 175, 227, 234, 238, 293, 362, 455
CviKI_1 RGCY 8 cut(s) 9, 175, 227, 234, 238, 293, 362, 455
CviQI GTAC 2 cut(s) 179, 402
DdeI CTNAG 2 cut(s) 372, 423
Eco47I GGWCC 1 cut(s) 144
FaeI CATG 2 cut(s) 331, 434
FaiI YATR 6 cut(s) 38, 200, 230, 329, 344, 432
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 327, 430
FokI GGATG 1 cut(s) 344
FspBI CTAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 331, 434
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 426, 474
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 214, 249
HpyCH4V TGCA 2 cut(s) 92, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 2 cut(s) 372, 423
Hsp92II CATG 2 cut(s) 331, 434
LmnI GCTCC 3 cut(s) 68, 224, 324
LpnPI CCDG 4 cut(s) 181, 220, 228, 281
LweI GCATC 2 cut(s) 201, 322
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 282
MboII GAAGA 1 cut(s) 358
MluCI AATT 2 cut(s) 26, 71
MnlI CCTC 6 cut(s) 57, 76, 107, 116, 126, 270
MseI TTAA 2 cut(s) 156, 468
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 271
NlaIII CATG 2 cut(s) 331, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 144
RsaI GTAC 2 cut(s) 180, 403
RsaNI GTAC 2 cut(s) 179, 402
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 2 cut(s) 156, 468
Sau96I GGNCC 1 cut(s) 144
ScaI AGTACT 2 cut(s) 180, 403
SetI ASST 8 cut(s) 49, 108, 229, 236, 295, 364, 382, 399
SfaNI GCATC 2 cut(s) 201, 322
SinI GGWCC 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 2 cut(s) 26, 71
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 176
TaqII GACCGA 1 cut(s) 132
TasI AATT 2 cut(s) 26, 71
TatI WGTACW 2 cut(s) 178, 401
Tru1I TTAA 2 cut(s) 156, 468
Tru9I TTAA 2 cut(s) 156, 468
TscAI CASTG 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 231, 359
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 144
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 2 cut(s) 180, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.