Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024687

Physical Location & Seq

Genomic Coordinates Reverse (-)

12079733 .. 12081952

Gene Structure 2220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGGGGGGATTCGGGGGGCCGACAGGCGGCGAAGATTTTGAAGGAAAGGTCACGCCTATTGTGGTCATTTCTTGCATATTGGCCGCTAGCGGAGGCCTAATGTTTGGTTATGATATTGGCATTTCAGGTGGTGTTACATCAATGCCCGACTTCCTAAAGGAATTCTTCCCGGTTGTGTATAGGAAGCAGCAAATTCCAGGACTTGAGAGTAATTACTGTAAATATGACAATCAAGGTCTGCAATTGTTCACGTCTTCATTGTACCTTGCTGCATTGACAGCAACCTTCTTTGCGTCGTACACAACCAGAGTTCTGGGCAGAAGGATGACCATGTTGATGGCCGGGTTTTTCTTCATAGCCGGAACTATTTTTAATGCTGCAGCTAAGAACCTTATCATGCTCATTATTGGGAGGCTCTTACTTGGTTGCGGAGTTGGTTTTGCTAACCAGGCCGTACCACTTTTCCTTTCGGAGATTGCACCCACAAGAATTCGTGGAGCACTTAACTTGCTCTTCCAGCTCATGGTCACCATTGGCATTCTTGTAGCACAACTTATCAATTATGGAACTGCCAAGATTAAAGGGGGATATGGATGGCGGGTATCACTGGGTTTGGCTGGCATTCCATCACTCTTGCTAACATTGGGGGCTGTCATTGTAACAGACACTCCAAACAGTTTGATCGATCGAACGAGGGAAGTTGGAGCAAGGAAAAAAAGTTCTGAAAAGGATCCGGGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

249

Amino Acids

26.45

Weight (kDa)

9.4

Isoelectric Point (pI)

21.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	26 - 241	2.3e-55	Sugar (and other) transporter
MFS_1	PF07690	78 - 227	1.5e-12	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024687)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g16360
rosa_multiflora	Rmu_sc0006800.1_g000011
rosa_samantha	Rh4CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AciI	CCGC	6 cut(s)	5, 30, 87, 93, 432, 601
AclWI	GGATC	2 cut(s)	728, 741
AcoI	YGGCCR	2 cut(s)	84, 342
AcsI	RAATTY	3 cut(s)	164, 195, 492
AfaI	GTAC	3 cut(s)	266, 302, 459
AfiI	CCNNNNNNNGG	2 cut(s)	29, 526
AgsI	TTSAA	1 cut(s)	44
AjiI	CACGTC	1 cut(s)	255
AjnI	CCWGG	2 cut(s)	199, 450
AloI	GAACNNNNNNTCC	2 cut(s)	706, 738
AluBI	AGCT	2 cut(s)	386, 523
AluI	AGCT	2 cut(s)	386, 523
Alw21I	GWGCWC	1 cut(s)	505
AlwI	GGATC	2 cut(s)	728, 741
AoxI	GGCC	5 cut(s)	20, 84, 97, 342, 453
ApeKI	GCWGC	4 cut(s)	190, 272, 380, 383
ApoI	RAATTY	3 cut(s)	164, 195, 492
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	3 cut(s)	173, 346, 738
AsuHPI	GGTGA	1 cut(s)	523
AsuNHI	GCTAGC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	733
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	4 cut(s)	202, 259, 367, 395
BccI	CCATC	3 cut(s)	334, 591, 637
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	2 cut(s)	201, 452
BcnI	CCSGG	3 cut(s)	173, 346, 738
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	6 cut(s)	31, 87, 191, 273, 381, 384
BlsI	GCNGC	6 cut(s)	32, 88, 192, 274, 382, 385
Bme1390I	CCNGG	5 cut(s)	173, 201, 346, 452, 738
BmgBI	CACGTC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	21, 735
BmrFI	CCNGG	5 cut(s)	173, 201, 346, 452, 738
BmrI	ACTGGG	1 cut(s)	620
BmtI	GCTAGC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	3 cut(s)	173, 346, 738
Bsa29I	ATCGAT	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	737
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 526
Bse1I	ACTGG	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	201, 452
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	737
BseGI	GGATG	2 cut(s)	333, 602
BseLI	CCNNNNNNNGG	2 cut(s)	29, 526
BseNI	ACTGG	1 cut(s)	615
BseXI	GCAGC	4 cut(s)	202, 259, 367, 395
Bsh1285I	CGRYCG	1 cut(s)	691
BshFI	GGCC	5 cut(s)	22, 86, 99, 344, 455
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	4 cut(s)	173, 345, 363, 737
BslI	CCNNNNNNNGG	2 cut(s)	29, 526
BsmI	GAATGC	2 cut(s)	540, 624
BsnI	GGCC	5 cut(s)	22, 86, 99, 344, 455
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	684, 688, 733
BspACI	CCGC	6 cut(s)	5, 30, 87, 93, 432, 601
BspANI	GGCC	5 cut(s)	22, 86, 99, 344, 455
BspDI	ATCGAT	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	21, 735
BspMAI	CTGCAG	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	728, 741
BspQI	GCTCTTC	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	3 cut(s)	684, 688, 733
Bst2UI	CCWGG	2 cut(s)	201, 452
Bst4CI	ACNGT	2 cut(s)	221, 680
Bst6I	CTCTTC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	91, 622
BstDEI	CTNAG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	2 cut(s)	333, 602
BstKTI	GATC	3 cut(s)	687, 691, 736
BstMBI	GATC	3 cut(s)	684, 688, 733
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 452, 520
BstNI	CCWGG	2 cut(s)	201, 452
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	5 cut(s)	171, 199, 344, 450, 736
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	4 cut(s)	202, 259, 367, 395
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	2 cut(s)	316, 340
BstYI	RGATCY	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	5 cut(s)	22, 86, 99, 344, 455
BsuTUI	ATCGAT	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	333, 602
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	2 cut(s)	91, 622
Cfr13I	GGNCC	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	265, 301, 458
CviAII	CATG	3 cut(s)	334, 400, 526
CviQI	GTAC	3 cut(s)	265, 301, 458
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	686, 690, 735
DpnII	GATC	3 cut(s)	684, 688, 733
EaeI	YGGCCR	2 cut(s)	84, 342
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco147I	AGGCCT	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	529
EcoRI	GAATTC	2 cut(s)	164, 492
EcoRII	CCWGG	2 cut(s)	199, 450
FaeI	CATG	3 cut(s)	337, 403, 529
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	333, 399, 525
FauI	CCCGC	1 cut(s)	594
Fnu4HI	GCNGC	6 cut(s)	31, 87, 191, 273, 381, 384
FokI	GGATG	2 cut(s)	340, 609
Fsp4HI	GCNGC	6 cut(s)	31, 87, 191, 273, 381, 384
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	6 cut(s)	31, 87, 191, 273, 381, 384
HaeIII	GGCC	5 cut(s)	22, 86, 99, 344, 455
HapII	CCGG	4 cut(s)	173, 345, 363, 737
HgaI	GACGC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	337, 403, 529
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	4 cut(s)	173, 345, 363, 737
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	252, 303
Hpy188I	TCNGA	2 cut(s)	475, 727
Hpy8I	GTNNAC	2 cut(s)	252, 303
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	38, 298, 318
HpyCH4III	ACNGT	2 cut(s)	221, 680
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	5 cut(s)	78, 244, 275, 383, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 452, 520
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	337, 403, 529
Kzo9I	GATC	3 cut(s)	684, 688, 733
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	500, 707
Lsp1109I	GCAGC	4 cut(s)	202, 259, 367, 395
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	4 cut(s)	52, 136, 529, 661
MalI	GATC	3 cut(s)	686, 690, 735
MboI	GATC	3 cut(s)	684, 688, 733
MboII	GAAGA	5 cut(s)	47, 160, 249, 346, 508
MfeI	CAATTG	1 cut(s)	245
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	6 cut(s)	164, 195, 214, 245, 492, 562
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	3 cut(s)	89, 408, 690
MseI	TTAA	3 cut(s)	375, 507, 582
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	4 cut(s)	173, 345, 363, 737
MspR9I	CCNGG	5 cut(s)	173, 201, 346, 452, 738
MunI	CAATTG	1 cut(s)	245
Mva1269I	GAATGC	2 cut(s)	540, 624
MvaI	CCWGG	2 cut(s)	201, 452
MwoI	GCNNNNNNNGC	3 cut(s)	281, 452, 520
NciI	CCSGG	3 cut(s)	173, 346, 738
NdeII	GATC	3 cut(s)	684, 688, 733
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	337, 403, 529
NlaIV	GGNNCC	2 cut(s)	21, 735
NmuCI	GTSAC	2 cut(s)	52, 529
PceI	AGGCCT	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	521
PctI	GAATGC	2 cut(s)	540, 624
PfeI	GAWTC	1 cut(s)	12
PflMI	CCANNNNNTGG	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	6 cut(s)	32, 88, 192, 274, 382, 385
Ple19I	CGATCG	1 cut(s)	691
Psp6I	CCWGG	2 cut(s)	199, 450
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	2 cut(s)	199, 450
PspN4I	GGNNCC	2 cut(s)	21, 735
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	733
PvuI	CGATCG	1 cut(s)	691
RsaI	GTAC	3 cut(s)	266, 302, 459
RsaNI	GTAC	3 cut(s)	265, 301, 458
RseI	CAYNNNNRTG	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	375, 507, 582
SatI	GCNGC	6 cut(s)	31, 87, 191, 273, 381, 384
Sau3AI	GATC	3 cut(s)	684, 688, 733
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	5 cut(s)	173, 201, 346, 452, 738
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	9 cut(s)	54, 133, 241, 257, 270, 290, 388, 396, 525
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	6 cut(s)	164, 195, 214, 245, 492, 562
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	6 cut(s)	5, 30, 87, 93, 432, 601
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	5 cut(s)	171, 199, 344, 450, 736
TaaI	ACNGT	2 cut(s)	221, 680
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	687, 691
TasI	AATT	6 cut(s)	164, 195, 214, 245, 492, 562
TauI	GCSGC	2 cut(s)	33, 89
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	3 cut(s)	375, 507, 582
Tru9I	TTAA	3 cut(s)	375, 507, 582
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	2 cut(s)	52, 529
TseI	GCWGC	4 cut(s)	190, 272, 380, 383
Tsp45I	GTSAC	2 cut(s)	52, 529
TspDTI	ATGAA	2 cut(s)	249, 346
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	526
XapI	RAATTY	3 cut(s)	164, 195, 492
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.