Rmu_sc0006800.1_g000011
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006800.1
OG0024687
Physical Location & Seq
Forward (+)
27447 .. 28807
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006800.1_g000011.1.cds

Sequence Viewer

Length: 825 bp
atggctgggggaggtatagctccatctggtggaaaaaattaccccggtaaattcacaaagagggttttcataacatgtcttgtcgcagcgtttggaggtttaattttcggttatgatcttggagtttcaggcggagtaacgtccatggacgtatttttgaaggagttctttccgaaagtctacttgcagcagtcttccgcctctgtttctactaatcagtactgtaaattcgacagtgaaacattgacgctctttacgtcgtcgctatatttggccgctttggtttcatgcctctgtgcctccactataactagagtcttaggtaggagggtcacaatgcttgccggtggacttcttttcctattcggtgcacttctcaatgccttcgctcactccgtcgggatgcttattgctgggcgcctattccttggtttcggcattggatttgccaatcaggctgtgccgatctatctatctgagacagcaccatacagattccgcggtggactcaacatgatgttccagttggcaattacaattggaattctttccctgctgtgtttatcatattgggatctacccacgggcctatcttcggctaccttcttcacactcttggctctgttctttgctgcttaccatgtcttttctgggatttttgggtcttctgatacccaccaccggcccaagaacttggaggagatgcagcctctgctgccgctggtccagctaggtgagatcaccaccgaggatctgaagcaatacgatggctctgatccaaacaagcctctgctcatggccatcaagtctcagatgtattggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

274

Amino Acids

29.73

Weight (kDa)

8.55

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024687)

Species Orthologous Gene IDs
pyrus_communis pycom13g16360
rosa_multiflora Rmu_sc0006800.1_g000011
rosa_samantha Rh4CG217000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 501
AciI CCGC 6 cut(s) 132, 198, 276, 499, 501, 719
AclWI GGATC 3 cut(s) 582, 759, 770
AcoI YGGCCR 2 cut(s) 273, 798
AcsI RAATTY 3 cut(s) 50, 227, 543
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 418
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 29, 595, 681
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 2 cut(s) 20, 730
AluI AGCT 2 cut(s) 20, 730
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 473, 813
Alw44I GTGCAC 1 cut(s) 369
AlwI GGATC 3 cut(s) 582, 759, 770
AlwNI CAGNNNCTG 1 cut(s) 712
AoxI GGCC 4 cut(s) 273, 586, 683, 798
ApaLI GTGCAC 1 cut(s) 369
ApeKI GCWGC 5 cut(s) 86, 187, 632, 706, 715
ApoI RAATTY 3 cut(s) 50, 227, 543
Asp700I GAANNNNTTC 2 cut(s) 164, 547
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 586, 684, 724
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 733, 746
AvaII GGWCC 1 cut(s) 724
BaeGI GKGCMC 1 cut(s) 373
BalI TGGCCA 1 cut(s) 800
BanI GGYRCC 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 186, 657
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 5 cut(s) 98, 199, 619, 702, 718
BccI CCATC 3 cut(s) 31, 761, 809
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 473, 813
BfaI CTAG 2 cut(s) 312, 731
BfoI RGCGCY 1 cut(s) 421
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 7 cut(s) 87, 188, 276, 633, 707, 716, 719
BlsI GCNGC 7 cut(s) 88, 189, 277, 634, 708, 717, 720
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 586, 684, 724
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 393, 693
BpiI GAAGAC 2 cut(s) 186, 657
BpuMI CCSGG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 418
BsaJI CCNNGG 6 cut(s) 43, 144, 427, 499, 582, 747
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 595, 681
Bse118I RCCGGY 2 cut(s) 344, 681
Bse1I ACTGG 1 cut(s) 523
BseDI CCNNGG 6 cut(s) 43, 144, 427, 499, 582, 747
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 3 cut(s) 29, 595, 681
BseMII CTCAG 2 cut(s) 468, 824
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 713
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 5 cut(s) 98, 199, 619, 702, 718
BseYI CCCAGC 2 cut(s) 5, 413
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 4 cut(s) 275, 588, 685, 800
BshNI GGYRCC 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 3 cut(s) 45, 345, 682
BslI CCNNNNNNNGG 3 cut(s) 29, 595, 681
BsmAI GTCTC 2 cut(s) 473, 813
BsnI GGCC 4 cut(s) 275, 588, 685, 800
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 6 cut(s) 115, 465, 574, 738, 751, 775
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 6 cut(s) 132, 198, 276, 499, 501, 719
BspANI GGCC 4 cut(s) 275, 588, 685, 800
BspCNI CTCAG 2 cut(s) 469, 823
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 419
BspPI GGATC 3 cut(s) 582, 759, 770
BspT107I GGYRCC 1 cut(s) 417
BsrFI RCCGGY 2 cut(s) 344, 681
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 2 cut(s) 344, 681
BssECI CCNNGG 6 cut(s) 43, 144, 427, 499, 582, 747
BssMI GATC 6 cut(s) 115, 465, 574, 738, 751, 775
BssNI GRCGYC 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 144, 427
Bst4CI ACNGT 2 cut(s) 224, 236
BstACI GRCGYC 1 cut(s) 418
BstAPI GCANNNNNTGC 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 319, 477, 810
BstDSI CCRYGG 3 cut(s) 144, 499, 582
BstF5I GGATG 1 cut(s) 408
BstFNI CGCG 1 cut(s) 501
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 6 cut(s) 118, 468, 577, 741, 754, 778
BstMAI GTCTC 2 cut(s) 473, 813
BstMBI GATC 6 cut(s) 115, 465, 574, 738, 751, 775
BstMWI GCNNNNNNNGC 4 cut(s) 455, 712, 715, 727
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 5 cut(s) 98, 199, 619, 702, 718
BstV2I GAAGAC 2 cut(s) 186, 657
BstX2I RGATCY 2 cut(s) 574, 751
BstXI CCANNNNNNTGG 1 cut(s) 694
BstYI RGATCY 2 cut(s) 574, 751
BsuRI GGCC 4 cut(s) 275, 588, 685, 800
BtgI CCRYGG 3 cut(s) 144, 499, 582
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 1 cut(s) 712
CfoI GCGC 1 cut(s) 420
Cfr10I RCCGGY 2 cut(s) 344, 681
Cfr13I GGNCC 3 cut(s) 586, 684, 724
Cfr42I CCGCGG 1 cut(s) 502
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 220
CviAII CATG 6 cut(s) 75, 145, 288, 514, 641, 796
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 3 cut(s) 319, 477, 810
DinI GGCGCC 1 cut(s) 419
DpnI GATC 6 cut(s) 117, 467, 576, 740, 753, 777
DpnII GATC 6 cut(s) 115, 465, 574, 738, 751, 775
EaeI YGGCCR 2 cut(s) 273, 798
EciI GGCGGA 2 cut(s) 147, 187
Eco130I CCWWGG 2 cut(s) 144, 427
Eco47I GGWCC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 776
EcoRI GAATTC 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 144, 427
EgeI GGCGCC 1 cut(s) 419
EheI GGCGCC 1 cut(s) 419
ErhI CCWWGG 2 cut(s) 144, 427
FaeI CATG 6 cut(s) 78, 148, 291, 517, 644, 799
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 6 cut(s) 74, 144, 287, 513, 640, 795
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 7 cut(s) 87, 188, 276, 633, 707, 716, 719
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 7 cut(s) 87, 188, 276, 633, 707, 716, 719
FspBI CTAG 2 cut(s) 312, 731
GlaI GCGC 1 cut(s) 419
GluI GCNGC 7 cut(s) 87, 188, 276, 633, 707, 716, 719
GsaI CCCAGC 2 cut(s) 9, 417
HaeII RGCGCY 1 cut(s) 421
HaeIII GGCC 4 cut(s) 275, 588, 685, 800
HapII CCGG 3 cut(s) 45, 345, 682
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 6 cut(s) 78, 148, 291, 517, 644, 799
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 3 cut(s) 315, 495, 507
HpaII CCGG 3 cut(s) 45, 345, 682
HphI GGTGA 2 cut(s) 733, 746
Hpy166II GTNNAC 4 cut(s) 181, 350, 371, 506
Hpy188I TCNGA 6 cut(s) 174, 478, 670, 756, 775, 813
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 4 cut(s) 181, 350, 371, 506
Hpy99I CGWCG 3 cut(s) 262, 265, 401
HpyAV CCTTC 3 cut(s) 154, 394, 613
HpyCH4III ACNGT 2 cut(s) 224, 236
HpyCH4IV ACGT 3 cut(s) 140, 150, 257
HpyCH4V TGCA 3 cut(s) 187, 371, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 712, 715, 727
HpyF3I CTNAG 3 cut(s) 319, 477, 810
HpySE526I ACGT 3 cut(s) 140, 150, 257
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 6 cut(s) 78, 148, 291, 517, 644, 799
HspAI GCGC 1 cut(s) 418
KasI GGCGCC 1 cut(s) 417
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 6 cut(s) 115, 465, 574, 738, 751, 775
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 5 cut(s) 98, 199, 619, 702, 718
LweI GCATC 2 cut(s) 393, 693
MaeI CTAG 2 cut(s) 312, 731
MaeII ACGT 3 cut(s) 140, 150, 257
MaeIII GTNAC 2 cut(s) 136, 331
MalI GATC 6 cut(s) 117, 467, 576, 740, 753, 777
MboI GATC 6 cut(s) 115, 465, 574, 738, 751, 775
MboII GAAGA 4 cut(s) 186, 585, 598, 657
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 574, 751
MhlI GDGCHC 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 7 cut(s) 37, 50, 102, 227, 531, 537, 543
MluNI TGGCCA 1 cut(s) 800
Mly113I GGCGCC 1 cut(s) 418
MlyI GAGTC 2 cut(s) 324, 501
Mox20I TGGCCA 1 cut(s) 800
MroXI GAANNNNTTC 2 cut(s) 164, 547
MscI TGGCCA 1 cut(s) 800
MseI TTAA 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 800
MspA1I CMGCKG 2 cut(s) 501, 721
MspI CCGG 3 cut(s) 45, 345, 682
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 537
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 4 cut(s) 455, 712, 715, 727
NarI GGCGCC 1 cut(s) 418
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 144
NdeII GATC 6 cut(s) 115, 465, 574, 738, 751, 775
NlaIII CATG 6 cut(s) 78, 148, 291, 517, 644, 799
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 78
PciI ACATGT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 2 cut(s) 254, 393
PdmI GAANNNNTTC 2 cut(s) 164, 547
PfeI GAWTC 1 cut(s) 495
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 7 cut(s) 88, 189, 277, 634, 708, 717, 720
PleI GAGTC 2 cut(s) 323, 501
PluTI GGCGCC 1 cut(s) 421
PpsI GAGTC 2 cut(s) 323, 501
PscI ACATGT 1 cut(s) 74
PspFI CCCAGC 2 cut(s) 5, 413
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 3 cut(s) 586, 684, 724
PstNI CAGNNNCTG 1 cut(s) 712
PsuI RGATCY 2 cut(s) 574, 751
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SacII CCGCGG 1 cut(s) 502
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 7 cut(s) 87, 188, 276, 633, 707, 716, 719
Sau3AI GATC 6 cut(s) 115, 465, 574, 738, 751, 775
Sau96I GGNCC 3 cut(s) 586, 684, 724
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 2 cut(s) 324, 501
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 2 cut(s) 393, 693
SfoI GGCGCC 1 cut(s) 419
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 1 cut(s) 724
Sse9I AATT 7 cut(s) 37, 50, 102, 227, 531, 537, 543
SsiI CCGC 6 cut(s) 132, 198, 276, 499, 501, 719
SspDI GGCGCC 1 cut(s) 417
SspMI CTAG 2 cut(s) 312, 731
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 2 cut(s) 144, 427
TaaI ACNGT 2 cut(s) 224, 236
TaiI ACGT 3 cut(s) 143, 153, 260
TaqI TCGA 1 cut(s) 231
TasI AATT 7 cut(s) 37, 50, 102, 227, 531, 537, 543
TatI WGTACW 1 cut(s) 219
TauI GCSGC 2 cut(s) 278, 721
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 5 cut(s) 86, 187, 632, 706, 715
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 58, 276
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 29
VneI GTGCAC 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 724
XapI RAATTY 3 cut(s) 50, 227, 543
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 164, 547
XspI CTAG 2 cut(s) 312, 731
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.