Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0024687

Physical Location & Seq

Genomic Coordinates Forward (+)

44892720 .. 44894463

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCGGCGGCTTTGGGACGCCGGCACATGGAGGTGGCGGAGACTTTGAGGCAAAGATCACGCTGGTTGTGGTCATTTCTTGTATATTGGCTGCTAGCGGGGGCCTTGTGTTTGGTTATGATATTGGTATTTCGGGGGGCGTTACAGCCATGCCTCCCTTCCTGAAGAAATTTTTTCCGGTTGTCTATAAGAAGACCCAGGAGAAAGGAATTGAGAGCAATTACTGCAAATACGACAATCAAGGCCTGCAGTTGTTCACATCTTCACTGTACCTCGCTGCTTTAACAGCAACATTTGCTGCATCGCACACAACAAGAACGCTAGGCCGAAAAGCAACCATGTTGATTGCTGGATTTTTCTTCATACTCGGAACTATTTTCAATGCTGCAGCTGTGAACCTTCTCATGCTTATTATTGGGAGGATCTTACTTGGTTGTGGAGTTGGTTTTGCTAATCAGGCGGTGCCGCTGTTCCTTTCTGAGATTGCACCTACAAGAATTCGTGGAGCACTCAACATTCTCTTCCAGCTCAATACCACCATTGGCATTCTTTTTGCGAACCTTGTCAATTATGGCACTGCCAAAATTTCAGGGGGTTGGGGATGGAGGCTATCTTTGGGATTGGCCGGCGTTCCTGCAGTTATGCTGACCTTGGGGTCTCTTATTGTGATAGACACTCCTAACAGTTTGATTGCACGCGGTAAGTTGGAGGAAGGAAAAGCAGCTCTTAAAAAGATTCGAGGTGTTAGCAATGTTGAGCCAGAAACTTGGAGATTGTGGAGGCAAGTCGTGTGGCTTCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

268

Amino Acids

28.53

Weight (kDa)

9.85

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	28 - 255	7e-55	Sugar (and other) transporter
MFS_1	PF07690	79 - 245	4.5e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024687)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g16360
rosa_multiflora	Rmu_sc0006800.1_g000011
rosa_samantha	Rh4CG217000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	463
AccII	CGCG	1 cut(s)	699
AciI	CCGC	6 cut(s)	9, 39, 99, 461, 467, 699
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	2 cut(s)	3, 624
AcsI	RAATTY	3 cut(s)	170, 498, 585
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	392, 529, 725
AluI	AGCT	3 cut(s)	392, 529, 725
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	36, 663
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	5 cut(s)	3, 103, 244, 325, 624
ApeKI	GCWGC	6 cut(s)	92, 278, 299, 386, 389, 722
ApoI	RAATTY	3 cut(s)	170, 498, 585
AspS9I	GGNCC	1 cut(s)	103
AsuNHI	GCTAGC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	6 cut(s)	79, 265, 286, 373, 401, 734
BccI	CCATC	1 cut(s)	597
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	36, 663
BfaI	CTAG	2 cut(s)	96, 323
BfmI	CTRYAG	3 cut(s)	248, 387, 636
BisI	GCNGC	8 cut(s)	10, 93, 279, 300, 387, 390, 467, 723
BlsI	GCNGC	8 cut(s)	11, 94, 280, 301, 388, 391, 468, 724
Bme1390I	CCNGG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	104, 465
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	311
BmtI	GCTAGC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	198, 651
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	3 cut(s)	5, 22, 626
Bse3DI	GCAATG	1 cut(s)	757
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	198, 651
BseGI	GGATG	1 cut(s)	608
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	1 cut(s)	471
BseXI	GCAGC	6 cut(s)	79, 265, 286, 373, 401, 734
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	5 cut(s)	5, 105, 246, 327, 626
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	4 cut(s)	6, 23, 179, 627
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	36, 663
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	5 cut(s)	5, 105, 246, 327, 626
Bso31I	GGTCTC	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	57, 423
BspACI	CCGC	6 cut(s)	9, 39, 99, 461, 467, 699
BspANI	GGCC	5 cut(s)	5, 105, 246, 327, 626
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	104, 465
BspMAI	CTGCAG	3 cut(s)	252, 391, 640
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	757
BsrFI	RCCGGY	3 cut(s)	5, 22, 626
BssAI	RCCGGY	3 cut(s)	5, 22, 626
BssECI	CCNNGG	2 cut(s)	198, 651
BssMI	GATC	2 cut(s)	57, 423
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	270, 686
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	2 cut(s)	225, 296
BstC8I	GCNNGC	6 cut(s)	7, 24, 97, 248, 628, 697
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	608
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	2 cut(s)	60, 426
BstMAI	GTCTC	2 cut(s)	36, 663
BstMBI	GATC	2 cut(s)	57, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 287, 296, 458
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	3 cut(s)	248, 387, 636
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	6 cut(s)	79, 265, 286, 373, 401, 734
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	5 cut(s)	5, 105, 246, 327, 626
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	608
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	266, 576
Cac8I	GCNNGC	6 cut(s)	7, 24, 97, 248, 628, 697
Cfr10I	RCCGGY	3 cut(s)	5, 22, 626
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	271
CspCI	CAANNNNNGTGG	1 cut(s)	773
CviAII	CATG	4 cut(s)	29, 151, 340, 406
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	2 cut(s)	59, 425
DpnII	GATC	2 cut(s)	57, 423
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
EaeI	YGGCCR	2 cut(s)	3, 624
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	651
Eco147I	AGGCCT	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	4 cut(s)	32, 154, 343, 409
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	28, 150, 339, 405
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	8 cut(s)	10, 93, 279, 300, 387, 390, 467, 723
FokI	GGATG	1 cut(s)	615
Fsp4HI	GCNGC	8 cut(s)	10, 93, 279, 300, 387, 390, 467, 723
FspBI	CTAG	2 cut(s)	96, 323
GluI	GCNGC	8 cut(s)	10, 93, 279, 300, 387, 390, 467, 723
HaeIII	GGCC	5 cut(s)	5, 105, 246, 327, 626
HapII	CCGG	4 cut(s)	6, 23, 179, 627
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	32, 154, 343, 409
HinfI	GANTC	1 cut(s)	736
HpaII	CCGG	4 cut(s)	6, 23, 179, 627
Hpy166II	GTNNAC	2 cut(s)	258, 397
Hpy188I	TCNGA	3 cut(s)	371, 481, 801
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	2 cut(s)	258, 397
HpyAV	CCTTC	3 cut(s)	169, 410, 707
HpyCH4III	ACNGT	2 cut(s)	270, 686
HpyCH4V	TGCA	7 cut(s)	228, 250, 302, 389, 488, 638, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 287, 296, 458
HpyF3I	CTNAG	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	32, 154, 343, 409
KroI	GCCGGC	3 cut(s)	5, 22, 626
KroNI	GCCGGC	3 cut(s)	7, 24, 628
Kzo9I	GATC	2 cut(s)	57, 423
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	6 cut(s)	79, 265, 286, 373, 401, 734
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	2 cut(s)	96, 323
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	59, 425
MboI	GATC	2 cut(s)	57, 423
MboII	GAAGA	5 cut(s)	178, 205, 255, 352, 514
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	6 cut(s)	170, 210, 220, 498, 568, 585
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	9 cut(s)	26, 43, 165, 284, 414, 600, 703, 734, 774
MroNI	GCCGGC	3 cut(s)	5, 22, 626
MseI	TTAA	2 cut(s)	284, 729
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	2 cut(s)	392, 469
MspI	CCGG	4 cut(s)	6, 23, 179, 627
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	225, 287, 296, 458
NaeI	GCCGGC	3 cut(s)	7, 24, 628
NdeII	GATC	2 cut(s)	57, 423
NgoMIV	GCCGGC	3 cut(s)	5, 22, 626
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	32, 154, 343, 409
NlaIV	GGNNCC	2 cut(s)	104, 465
PceI	AGGCCT	1 cut(s)	246
PctI	GAATGC	1 cut(s)	546
PdiI	GCCGGC	3 cut(s)	7, 24, 628
PfeI	GAWTC	1 cut(s)	736
PkrI	GCNGC	8 cut(s)	11, 94, 280, 301, 388, 391, 468, 724
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	104, 465
PspPI	GGNCC	1 cut(s)	103
PstI	CTGCAG	3 cut(s)	252, 391, 640
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	284, 729
SatI	GCNGC	8 cut(s)	10, 93, 279, 300, 387, 390, 467, 723
Sau3AI	GATC	2 cut(s)	57, 423
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	3 cut(s)	248, 387, 636
SmiMI	CAYNNNNRTG	1 cut(s)	33
Sse9I	AATT	6 cut(s)	170, 210, 220, 498, 568, 585
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	6 cut(s)	9, 39, 99, 461, 467, 699
SspMI	CTAG	2 cut(s)	96, 323
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	270, 686
TaqI	TCGA	1 cut(s)	739
TasI	AATT	6 cut(s)	170, 210, 220, 498, 568, 585
TauI	GCSGC	2 cut(s)	12, 469
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	2 cut(s)	284, 729
Tru9I	TTAA	2 cut(s)	284, 729
TscAI	CASTG	2 cut(s)	273, 583
TseI	GCWGC	6 cut(s)	92, 278, 299, 386, 389, 722
TspDTI	ATGAA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	273, 583
XapI	RAATTY	3 cut(s)	170, 498, 585
XspI	CTAG	2 cut(s)	96, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.