pycom13g21180

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0028283
Physical Location & Seq
Forward (+)
17427201 .. 17427671
471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGCCTCCAAAATCCGAGACCCTGCCTCCATCCACCTCCATTGACCCAATTCTCCTCATCCTCGGATTCTCCCCTACAGCTTCCTCCGCCCCCCGGGCATCGGATCAACTCAGGACCACTTTCTTCCCCGACCGGGTCAACGGGCAGTACATAAATCGAATGTCTATCTTCTGGGTTCATGTTCGTTCTGGGTGGGATCGTGTGATGGTGTCGCATGCCACTGCTGGGATTTCCTCTGTCGTTCTCGCCTATGTTATGAGTATGCTGTTTATTCGTATCAAGATCCCAGGTTATCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

9.98

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028283)

Species Orthologous Gene IDs
malus_domestica MD13G1241300.v1.1
pyrus_communis pycom13g21180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AclWI GGATC 3 cut(s) 111, 204, 277
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 3 cut(s) 111, 204, 277
Ama87I CYCGRG 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 3 cut(s) 94, 95, 134
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 114
BccI CCATC 2 cut(s) 37, 199
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 3 cut(s) 94, 95, 134
BcoDI GTCTC 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 95
Bme1390I CCNGG 4 cut(s) 94, 95, 134, 288
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 4 cut(s) 94, 95, 134, 288
BmsI GCATC 1 cut(s) 107
BpuMI CCSGG 3 cut(s) 94, 95, 134
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 61, 92, 93, 286
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 61, 92, 93, 286
BseGI GGATG 2 cut(s) 29, 57
BseLI CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 44
BseYI CCCAGC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 94, 133
BslI CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 3 cut(s) 103, 196, 282
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 123
BspPI GGATC 3 cut(s) 111, 204, 277
BspTNI GGTCTC 1 cut(s) 11
BssECI CCNNGG 4 cut(s) 61, 92, 93, 286
BssMI GATC 3 cut(s) 103, 196, 282
Bst2UI CCWGG 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 29, 57
BstKTI GATC 3 cut(s) 106, 199, 285
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 103, 196, 282
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 92, 93, 132, 286
BstSFI CTRYAG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BtsCI GGATG 2 cut(s) 29, 57
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 114
Cfr9I CCCGGG 1 cut(s) 93
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 2 cut(s) 179, 215
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 105, 198, 284
DpnII GATC 3 cut(s) 103, 196, 282
EciI GGCGGA 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 182, 218
FaiI YATR 6 cut(s) 152, 180, 216, 252, 257, 263
FatI CATG 2 cut(s) 178, 214
FokI GGATG 2 cut(s) 16, 44
GsaI CCCAGC 1 cut(s) 228
HapII CCGG 2 cut(s) 94, 133
Hin1II CATG 2 cut(s) 182, 218
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 94, 133
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 16, 65, 103
Hpy188III TCNNGA 2 cut(s) 112, 280
Hpy8I GTNNAC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 2 cut(s) 182, 218
Kzo9I GATC 3 cut(s) 103, 196, 282
LpnPI CCDG 8 cut(s) 35, 97, 107, 146, 157, 174, 210, 273
LweI GCATC 1 cut(s) 107
MalI GATC 3 cut(s) 105, 198, 284
MboI GATC 3 cut(s) 103, 196, 282
MboII GAAGA 2 cut(s) 115, 160
MflI RGATCY 1 cut(s) 282
MluCI AATT 1 cut(s) 48
MnlI CCTC 7 cut(s) 15, 36, 46, 65, 71, 94, 244
MseI TTAA 1 cut(s) 301
MspI CCGG 2 cut(s) 94, 133
MspR9I CCNGG 4 cut(s) 94, 95, 134, 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NciI CCSGG 3 cut(s) 94, 95, 134
NdeII GATC 3 cut(s) 103, 196, 282
NlaIII CATG 2 cut(s) 182, 218
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 301
Sau3AI GATC 3 cut(s) 103, 196, 282
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 4 cut(s) 94, 95, 134, 288
SetI ASST 3 cut(s) 38, 82, 292
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 95
SphI GCATGC 1 cut(s) 218
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 92, 93, 132, 286
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 167
TspMI CCCGGG 1 cut(s) 93
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.