pycom13g24330

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0029318
Physical Location & Seq
Forward (+)
21498557 .. 21500466
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g24330.13

Sequence Viewer

Length: 1362 bp
ATGATAAACACATTATTTTTAACTTCTCACAAACTTCTATTTAATCTTATTCGTTGTTTGAGTTTGATTTCTTCAATCCGAGAGGAAAAGCTCTCTTTTGAAAAAAGCGAGAAGCTTAAGGTTTGGAAAGCTTTGAGCAAAGGGGAACGAAGGACCCCTCAATTTACGTTTAAACAGTATTTAACCAAAAATGATCGATCCAAAATCCTCTTCTCACCCTTCTCTAGCTTAATCGGTGCAAGCTCCGCGCAGCACTTGGGTTTTTTCAACTTCTCCAACAACGGCGACCCCAACAACAACATCTTCGGTGTCGAGTTTGATGTCTTTGAAAATCAAGAGTTCCATGATCCTGATGACAACCATCACCGCAGGGTTTGTTTGTTGACTTTTTCTGACGGTTTTGTTAATGGGTTTGACGGTGTGGGAGTCGATCGTTCGCCTCGGAGCTTTGGGTTTGGCCATGGCGGAGATTCTAGAGGCTCATCGCCCAAACCAGGCACGCAGGATTTGAAATTTGGAATTTGGAAGAAGAAATGTGGGATACTTCCTACAGAGGACAATATCTCCTTTATTATAGAGGACTTTTTCTTCTACCTATTAACTGGGCTTTGTTTTGCGAGGTTGGACTTGAAATTTCTATTTTCTTGGTTTCCCACTTGGTGCAATTTGTTGAGTCATTCATCCCTTAACACTGTTGAACTAGGCAGAAAAAAGAACCAAAACATAAAACTGTTTCTGGAGAACCAAAAATATAACATTGTTTCTGGAAAAAAAAAAAAAAATCAAATACAGTGTTCGTTTTGTTTGTGCACAAACAAACATTGTATCTGGAAAGAAAATAACCAAAATCCAGAAACATTCTTTTCTTTCGTGCATAAGTTGATTATATTTAAGAAACATGATTTCTTTTGTAGCTTACATTTAAGAAATAATGTGTCTATTTCATTTGGATCCATAAACAGTAACTTAGATTCCAGAAACAGTAACTTAGGTTTCAAAAGCAGTGACTTAGATTCTAGAAATAGTAACTTAGATTCCAGAAACACATCCAGATCTCAAATTTATTTTCATGAGAAACAAATGATGAACTCCACTAACGAAGAAAATTTTAAAAACAATAAAGGGAATTGTTATTGGTACTCCAAAATTCTCATTATACACTCCAAACTTTCTATATTTAGAAAGAAAGATACACTTGTGAGGAGTAAATTAAGTAGCATGAGGATCTATCCATCCCCAATTTTTGTTTCAAAGAAAAAGAAGAAGGTCTGCAAAACAACGATGAACTTCATTAACAACGAAAATCTGAAACTCAACCTAAAAAAGTTAGGGGTAAAATCGACAAATCATAATTTATTATAG

Protein Analysis

454

Amino Acids

52.46

Weight (kDa)

9.72

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029318)

Species Orthologous Gene IDs
pyrus_communis pycom07g08450 pycom13g24330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 248
AciI CCGC 3 cut(s) 246, 367, 465
AclWI GGATC 5 cut(s) 192, 341, 945, 958, 1232
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 6 cut(s) 512, 519, 632, 1059, 1105, 1146
AdeI CACNNNGTG 1 cut(s) 660
AfaI GTAC 1 cut(s) 1139
AfiI CCNNNNNNNGG 1 cut(s) 494
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 9 cut(s) 75, 101, 268, 329, 511, 631, 698, 997, 1251
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 1231, 1263
AluBI AGCT 7 cut(s) 91, 115, 131, 228, 243, 447, 915
AluI AGCT 7 cut(s) 91, 115, 131, 228, 243, 447, 915
Alw21I GWGCWC 1 cut(s) 812
Alw44I GTGCAC 1 cut(s) 808
AlwI GGATC 5 cut(s) 192, 341, 945, 958, 1232
AoxI GGCC 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 808
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 6 cut(s) 512, 519, 632, 1059, 1105, 1146
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 207, 356
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 812
BaeI ACNNNNGTAYC 2 cut(s) 1182, 1215
BalI TGGCCA 1 cut(s) 459
BamHI GGATCC 1 cut(s) 950
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 1 cut(s) 262
BccI CCATC 2 cut(s) 369, 1240
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 534
BfaI CTAG 4 cut(s) 225, 474, 701, 1017
BfmI CTRYAG 1 cut(s) 549
BfrI CTTAAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 534
BglII AGATCT 1 cut(s) 1052
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 155, 952
BmrFI CCNGG 1 cut(s) 495
BmrI ACTGGG 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 758
Bsa29I ATCGAT 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 440, 460
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 607
BseBI CCWGG 1 cut(s) 495
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 440, 460
BseGI GGATG 3 cut(s) 680, 1046, 1232
BseLI CCNNNNNNNGG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 1 cut(s) 1216
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 196
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 812
BslI CCNNNNNNNGG 1 cut(s) 494
BsnI GGCC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 812
Bsp143I GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
Bsp19I CCATGG 1 cut(s) 460
BspACI CCGC 3 cut(s) 246, 367, 465
BspANI GGCC 1 cut(s) 459
BspDI ATCGAT 1 cut(s) 196
BspFNI CGCG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 1069
BspLI GGNNCC 2 cut(s) 155, 952
BspPI GGATC 5 cut(s) 192, 341, 945, 958, 1232
BspTI CTTAAG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 2 cut(s) 440, 460
BssMI GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 8 cut(s) 177, 398, 419, 694, 732, 792, 962, 983
Bst6I CTCTTC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 241, 500
BstDEI CTNAG 4 cut(s) 967, 988, 1009, 1030
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 3 cut(s) 680, 1046, 1232
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 7 cut(s) 196, 200, 349, 433, 953, 1055, 1227
BstMBI GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 549
BstSLI GKGCMC 1 cut(s) 812
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 3 cut(s) 950, 1052, 1224
BstYI RGATCY 3 cut(s) 950, 1052, 1224
Bsu15I ATCGAT 1 cut(s) 196
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 460
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 3 cut(s) 680, 1046, 1232
BtsI GCAGTG 1 cut(s) 1009
BtsIMutI CAGTG 3 cut(s) 690, 797, 1009
Cac8I GCNNGC 2 cut(s) 241, 500
CciI TCATGA 1 cut(s) 1069
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 153
ClaI ATCGAT 1 cut(s) 196
Csp6I GTAC 1 cut(s) 1138
CviAII CATG 5 cut(s) 344, 461, 899, 1070, 1219
CviQI GTAC 1 cut(s) 1138
DdeI CTNAG 4 cut(s) 967, 988, 1009, 1030
DpnI GATC 7 cut(s) 195, 199, 348, 432, 952, 1054, 1226
DpnII GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
DraI TTTAAA 2 cut(s) 172, 1111
DraIII CACNNNGTG 1 cut(s) 660
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 5 cut(s) 347, 464, 902, 1073, 1222
FalI AAGNNNNNCTT 2 cut(s) 1179, 1211
FatI CATG 5 cut(s) 343, 460, 898, 1069, 1218
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 3 cut(s) 667, 1033, 1219
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 4 cut(s) 225, 474, 701, 1017
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 1 cut(s) 459
HhaI GCGC 1 cut(s) 250
Hin1II CATG 5 cut(s) 347, 464, 902, 1073, 1222
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 113, 129
HinfI GANTC 6 cut(s) 426, 470, 673, 971, 1013, 1034
HphI GGTGA 2 cut(s) 207, 356
Hpy166II GTNNAC 2 cut(s) 384, 810
Hpy188I TCNGA 4 cut(s) 80, 394, 444, 1308
Hpy8I GTNNAC 2 cut(s) 384, 810
HpyAV CCTTC 3 cut(s) 144, 229, 1258
HpyCH4III ACNGT 8 cut(s) 177, 398, 419, 694, 732, 792, 962, 983
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 5 cut(s) 239, 663, 810, 874, 1272
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 4 cut(s) 967, 988, 1009, 1030
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 5 cut(s) 347, 464, 902, 1073, 1222
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
LmnI GCTCC 2 cut(s) 248, 444
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 4 cut(s) 225, 474, 701, 1017
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 4 cut(s) 962, 983, 1004, 1025
MalI GATC 7 cut(s) 195, 199, 348, 432, 952, 1054, 1226
MboI GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
MboII GAAGA 8 cut(s) 63, 202, 295, 538, 541, 580, 1112, 1273
MflI RGATCY 3 cut(s) 950, 1052, 1224
MhlI GDGCHC 1 cut(s) 812
MlsI TGGCCA 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 2 cut(s) 435, 682
MmeI TCCRAC 2 cut(s) 300, 603
Mox20I TGGCCA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 459
MspCI CTTAAG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 495
MssI GTTTAAAC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 460
NdeII GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
NlaIII CATG 5 cut(s) 347, 464, 902, 1073, 1222
NlaIV GGNNCC 2 cut(s) 155, 952
NmuCI GTSAC 1 cut(s) 1004
PagI TCATGA 1 cut(s) 1069
PfeI GAWTC 4 cut(s) 470, 971, 1013, 1034
PkrI GCNGC 1 cut(s) 252
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 2 cut(s) 434, 681
PmeI GTTTAAAC 1 cut(s) 172
PpsI GAGTC 2 cut(s) 434, 681
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 155, 952
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 3 cut(s) 950, 1052, 1224
PvuI CGATCG 1 cut(s) 433
RsaI GTAC 1 cut(s) 1139
RsaNI GTAC 1 cut(s) 1138
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 7 cut(s) 193, 197, 346, 430, 950, 1052, 1224
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 2 cut(s) 435, 682
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 812
SfcI CTRYAG 1 cut(s) 549
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 3 cut(s) 246, 367, 465
SspMI CTAG 4 cut(s) 225, 474, 701, 1017
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 8 cut(s) 177, 398, 419, 694, 732, 792, 962, 983
TaiI ACGT 1 cut(s) 170
TaqI TCGA 4 cut(s) 196, 312, 429, 1340
TfiI GAWTC 4 cut(s) 470, 971, 1013, 1034
TscAI CASTG 3 cut(s) 697, 797, 1009
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 6 cut(s) 669, 933, 1058, 1100, 1279, 1298
TspRI CASTG 3 cut(s) 697, 797, 1009
Vha464I CTTAAG 1 cut(s) 116
VneI GTGCAC 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 6 cut(s) 512, 519, 632, 1059, 1105, 1146
XbaI TCTAGA 2 cut(s) 473, 1016
XspI CTAG 4 cut(s) 225, 474, 701, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.