Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029318

Physical Location & Seq

Genomic Coordinates Forward (+)

21498557 .. 21500466

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGATAAACACATTATTTTTAACTTCTCACAAACTTCTATTTAATCTTATTCGTTGTTTGAGTTTGATTTCTTCAATCCGAGAGGAAAAGCTCTCTTTTGAAAAAAGCGAGAAGCTTAAGGTTTGGAAAGCTTTGAGCAAAGGGGAACGAAGGACCCCTCAATTTACGTTTAAACAGTATTTAACCAAAAATGATCGATCCAAAATCCTCTTCTCACCCTTCTCTAGCTTAATCGGTGCAAGCTCCGCGCAGCACTTGGGTTTTTTCAACTTCTCCAACAACGGCGACCCCAACAACAACATCTTCGGTGTCGAGTTTGATGTCTTTGAAAATCAAGAGTTCCATGATCCTGATGACAACCATCACCGCAGGGTTTGTTTGTTGACTTTTTCTGACGGTTTTGTTAATGGGTTTGACGGTGTGGGAGTCGATCGTTCGCCTCGGAGCTTTGGGTTTGGCCATGGCGGAGATTCTAGAGGCTCATCGCCCAAACCAGGCACGCAGGATTTGAAATTTGGAATTTGGAAGAAGAAATGTGGGATACTTCCTACAGAGGACAATATCTCCTTTATTATAGAGGACTTTTTCTTCTACCTATTAACTGGGCTTTGTTTTGCGAGGTTGGACTTGAAATTTCTATTTTCTTGGTTTCCCACTTGGTGCAATTTGTTGAGTCATTCATCCCTTAACACTGTTGAACTAGGCAGAAAAAAGAACCAAAACATAAAACTGTTTCTGGAGAACCAAAAATATAACATTGTTTCTGGAAAAAAAAAAAAAAATCAAATACAGTGTTCGTTTTGTTTGTGCACAAACAAACATTGTATCTGGAAAGAAAATAACCAAAATCCAGAAACATTCTTTTCTTTCGTGCATAAGTTGATTATATTTAAGAAACATGATTTCTTTTGTAGCTTACATTTAAGAAATAATGTGTCTATTTCATTTGGATCCATAAACAGTAACTTAGATTCCAGAAACAGTAACTTAGGTTTCAAAAGCAGTGACTTAGATTCTAGAAATAGTAACTTAGATTCCAGAAACACATCCAGATCTCAAATTTATTTTCATGAGAAACAAATGATGAACTCCACTAACGAAGAAAATTTTAAAAACAATAAAGGGAATTGTTATTGGTACTCCAAAATTCTCATTATACACTCCAAACTTTCTATATTTAGAAAGAAAGATACACTTGTGAGGAGTAAATTAAGTAGCATGAGGATCTATCCATCCCCAATTTTTGTTTCAAAGAAAAAGAAGAAGGTCTGCAAAACAACGATGAACTTCATTAACAACGAAAATCTGAAACTCAACCTAAAAAAGTTAGGGGTAAAATCGACAAATCATAATTTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

454

Amino Acids

52.46

Weight (kDa)

9.72

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	72 - 121	5.4e-09	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029318)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g08450 pycom13g24330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	3 cut(s)	246, 367, 465
AclWI	GGATC	5 cut(s)	192, 341, 945, 958, 1232
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	6 cut(s)	512, 519, 632, 1059, 1105, 1146
AdeI	CACNNNGTG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	1139
AfiI	CCNNNNNNNGG	1 cut(s)	494
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	9 cut(s)	75, 101, 268, 329, 511, 631, 698, 997, 1251
AjnI	CCWGG	1 cut(s)	493
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 1231, 1263
AluBI	AGCT	7 cut(s)	91, 115, 131, 228, 243, 447, 915
AluI	AGCT	7 cut(s)	91, 115, 131, 228, 243, 447, 915
Alw21I	GWGCWC	1 cut(s)	812
Alw44I	GTGCAC	1 cut(s)	808
AlwI	GGATC	5 cut(s)	192, 341, 945, 958, 1232
AoxI	GGCC	1 cut(s)	457
ApaLI	GTGCAC	1 cut(s)	808
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	6 cut(s)	512, 519, 632, 1059, 1105, 1146
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	207, 356
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	812
BaeI	ACNNNNGTAYC	2 cut(s)	1182, 1215
BalI	TGGCCA	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	950
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	369, 1240
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	495
BciVI	GTATCC	1 cut(s)	534
BfaI	CTAG	4 cut(s)	225, 474, 701, 1017
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	534
BglII	AGATCT	1 cut(s)	1052
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	155, 952
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	758
Bsa29I	ATCGAT	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	440, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	440, 460
BseGI	GGATG	3 cut(s)	680, 1046, 1232
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	1216
BseSI	GKGCMC	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	459
BshVI	ATCGAT	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	812
BslI	CCNNNNNNNGG	1 cut(s)	494
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	3 cut(s)	246, 367, 465
BspANI	GGCC	1 cut(s)	459
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	2 cut(s)	155, 952
BspPI	GGATC	5 cut(s)	192, 341, 945, 958, 1232
BspTI	CTTAAG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	440, 460
BssMI	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	8 cut(s)	177, 398, 419, 694, 732, 792, 962, 983
Bst6I	CTCTTC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	241, 500
BstDEI	CTNAG	4 cut(s)	967, 988, 1009, 1030
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	3 cut(s)	680, 1046, 1232
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	7 cut(s)	196, 200, 349, 433, 953, 1055, 1227
BstMBI	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
BstMCI	CGRYCG	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	812
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	3 cut(s)	950, 1052, 1224
BstYI	RGATCY	3 cut(s)	950, 1052, 1224
Bsu15I	ATCGAT	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	680, 1046, 1232
BtsI	GCAGTG	1 cut(s)	1009
BtsIMutI	CAGTG	3 cut(s)	690, 797, 1009
Cac8I	GCNNGC	2 cut(s)	241, 500
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	1138
CviAII	CATG	5 cut(s)	344, 461, 899, 1070, 1219
CviQI	GTAC	1 cut(s)	1138
DdeI	CTNAG	4 cut(s)	967, 988, 1009, 1030
DpnI	GATC	7 cut(s)	195, 199, 348, 432, 952, 1054, 1226
DpnII	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
DraI	TTTAAA	2 cut(s)	172, 1111
DraIII	CACNNNGTG	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	5 cut(s)	347, 464, 902, 1073, 1222
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FatI	CATG	5 cut(s)	343, 460, 898, 1069, 1218
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	3 cut(s)	667, 1033, 1219
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	4 cut(s)	225, 474, 701, 1017
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	5 cut(s)	347, 464, 902, 1073, 1222
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HindIII	AAGCTT	2 cut(s)	113, 129
HinfI	GANTC	6 cut(s)	426, 470, 673, 971, 1013, 1034
HphI	GGTGA	2 cut(s)	207, 356
Hpy166II	GTNNAC	2 cut(s)	384, 810
Hpy188I	TCNGA	4 cut(s)	80, 394, 444, 1308
Hpy8I	GTNNAC	2 cut(s)	384, 810
HpyAV	CCTTC	3 cut(s)	144, 229, 1258
HpyCH4III	ACNGT	8 cut(s)	177, 398, 419, 694, 732, 792, 962, 983
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	239, 663, 810, 874, 1272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	4 cut(s)	967, 988, 1009, 1030
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	347, 464, 902, 1073, 1222
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
LmnI	GCTCC	2 cut(s)	248, 444
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	4 cut(s)	225, 474, 701, 1017
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	4 cut(s)	962, 983, 1004, 1025
MalI	GATC	7 cut(s)	195, 199, 348, 432, 952, 1054, 1226
MboI	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
MboII	GAAGA	8 cut(s)	63, 202, 295, 538, 541, 580, 1112, 1273
MflI	RGATCY	3 cut(s)	950, 1052, 1224
MhlI	GDGCHC	1 cut(s)	812
MlsI	TGGCCA	1 cut(s)	459
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	435, 682
MmeI	TCCRAC	2 cut(s)	300, 603
Mox20I	TGGCCA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	459
MspCI	CTTAAG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	495
MssI	GTTTAAAC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
NlaIII	CATG	5 cut(s)	347, 464, 902, 1073, 1222
NlaIV	GGNNCC	2 cut(s)	155, 952
NmuCI	GTSAC	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	1069
PfeI	GAWTC	4 cut(s)	470, 971, 1013, 1034
PkrI	GCNGC	1 cut(s)	252
Ple19I	CGATCG	1 cut(s)	433
PleI	GAGTC	2 cut(s)	434, 681
PmeI	GTTTAAAC	1 cut(s)	172
PpsI	GAGTC	2 cut(s)	434, 681
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	2 cut(s)	155, 952
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	950, 1052, 1224
PvuI	CGATCG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	1139
RsaNI	GTAC	1 cut(s)	1138
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	7 cut(s)	193, 197, 346, 430, 950, 1052, 1224
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	2 cut(s)	435, 682
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	812
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	3 cut(s)	246, 367, 465
SspMI	CTAG	4 cut(s)	225, 474, 701, 1017
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	8 cut(s)	177, 398, 419, 694, 732, 792, 962, 983
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	196, 312, 429, 1340
TfiI	GAWTC	4 cut(s)	470, 971, 1013, 1034
TscAI	CASTG	3 cut(s)	697, 797, 1009
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	6 cut(s)	669, 933, 1058, 1100, 1279, 1298
TspRI	CASTG	3 cut(s)	697, 797, 1009
Vha464I	CTTAAG	1 cut(s)	116
VneI	GTGCAC	1 cut(s)	808
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	6 cut(s)	512, 519, 632, 1059, 1105, 1146
XbaI	TCTAGA	2 cut(s)	473, 1016
XspI	CTAG	4 cut(s)	225, 474, 701, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.