Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0024465

Physical Location & Seq

Genomic Coordinates Forward (+)

1234278 .. 1236292

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCTCAATGTTGTTTTTGCTGTTACTCGGTCATGGGGTTTCTTAAGATTTGCAATGCTCCCGCTTCTTCCATGGCTGCTCTTATGCAACCAACCATTAGAGTTGTGGCAATCATTACTGAAGGTGTACCTGAGTCAGACACTAAGCAATTGATCGATCATATGCACGGGCAAACAACAAGGTTGTCATTGGCCCTGCTACTATTGGAGGAATTCAAGTTGGAGCTTTTAAGATTGGTGACACTGCTGGAACAATTGATAACATTATTCACTACAAGCTATACAGGCCTGGATCTATTGGTTTTGTCTCCAAATCTAATGGACAGCCTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016020 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Citrate_synt CoA_binding Ligase_CoA

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

4.89

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024465)

Species	Orthologous Gene IDs
malus_domestica	MD05G1220000.v1.1
pyrus_communis	pycom07g27250 pycom14g01700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	129
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	226, 279
AluI	AGCT	2 cut(s)	226, 279
Alw26I	GTCTC	2 cut(s)	9, 312
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	2 cut(s)	192, 286
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	9, 312
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	2 cut(s)	194, 288
BshVI	ATCGAT	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	9, 312
BsnI	GGCC	2 cut(s)	194, 288
Bsp143I	GATC	3 cut(s)	153, 157, 292
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	194, 288
BspCNI	CTCAG	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	156
BspPI	GGATC	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	153, 157, 292
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	132, 144
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	156, 160, 295
BstMAI	GTCTC	2 cut(s)	9, 312
BstMBI	GATC	3 cut(s)	153, 157, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	194, 288
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	34, 73
CviJI	RGCY	6 cut(s)	77, 194, 226, 279, 288, 327
CviKI_1	RGCY	6 cut(s)	77, 194, 226, 279, 288, 327
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	132, 144
DpnI	GATC	3 cut(s)	155, 159, 294
DpnII	GATC	3 cut(s)	153, 157, 292
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	37, 76
FaiI	YATR	6 cut(s)	35, 74, 86, 162, 164, 282
FatI	CATG	2 cut(s)	33, 72
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	194, 288
Hin1II	CATG	2 cut(s)	37, 76
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	54, 88, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	132, 144
Hsp92II	CATG	2 cut(s)	37, 76
Kzo9I	GATC	3 cut(s)	153, 157, 292
LmnI	GCTCC	2 cut(s)	64, 223
LpnPI	CCDG	6 cut(s)	144, 209, 233, 270, 275, 302
Lsp1109I	GCAGC	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	23, 238
MalI	GATC	3 cut(s)	155, 159, 294
MboI	GATC	3 cut(s)	153, 157, 292
MboII	GAAGA	1 cut(s)	60
MfeI	CAATTG	2 cut(s)	149, 254
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	3 cut(s)	149, 212, 254
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	1 cut(s)	202
MseI	TTAA	2 cut(s)	45, 230
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	2 cut(s)	149, 254
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	3 cut(s)	153, 157, 292
NlaIII	CATG	2 cut(s)	37, 76
NmuCI	GTSAC	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	45, 230
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	153, 157, 292
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	5 cut(s)	127, 133, 185, 228, 281
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	149, 212, 254
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	156
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	149, 212, 254
Tru1I	TTAA	2 cut(s)	45, 230
Tru9I	TTAA	2 cut(s)	45, 230
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.