Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0024268

Physical Location & Seq

Genomic Coordinates Forward (+)

1809967 .. 1813287

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAAGGCACATGTTATGTCGCTGAATAGAAAAAAACATGAATCAATCATATCCAACACTACCTTTGGTGTTTGGTTTGCAAGAAAATTACAAATTTTCAAGGAGATTTCGTTCCTCCTGCATTGTGATTGCCGGTCTAGAATTGGAGAATTTCTGTTGAGAGTTGAGGTAATGGGTGGATGCATTTCAACAATGCGGGGGAGGGCAAAGTCGTCTCAATCAAGGCCTTCTTCAAAGAGTGGATATCCCCAAGCCCATTTGCCAGCTTCTGAAGAAACTCAGAGCTATTACAATTCCCTGATTAAGGTGACTCAGGCTCTTGAACATGCTCGTCTCGAGTCTCCCAATTTTATTGTGGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTAACAGAAGAAGCTTGCACCACAGTGGGGATTGTCCAAATCCCTATGAACACGCGATATCCAATATTGGAAAAACCTTGGCTGGTTTCGATGAGGATAACTTAATTCCATGTTTTGGCTTTGGAGATGCGACAACCCATGATGAAGATGTCTTCAGTTTTTATCCGGATGGCAGGCTTTGCAATGGATTTGAGGAAGTATTGACAACCTACAGGAAAATTGTTCCTTTTCTACAACTTGCAGGTCCAAGTTCATTTGCACCTATAATTCAAATGGCCATGTCTATCGTTGAGAAGAGTGGTGGCCAATTCCATGTCCTGTTGATAATTACGAGCGGTCAGCTTGGTGTGCAGAAGCAGAAGACAATTGATGCCATTGTTGAAGCAAGCAATCTCCCTCTATCAATTATATTAGTTGGTGTTGGTGATGGACCCTGGGACAGCATGAAGAGACTTGGTGACTCTACTCGTAGTCGGGCATTTGATAATCTCCATTTTGTGAATTTTACGGACATTGTGACAAAGAATGTGCCCCCTTCACAAAAGAAGGCCGAATTTACACAAGCAACTCTGATGAAAATTCCTTCGCAGTATAACGCAACAAGAAACTTATCTATGTCAGGTGGTCAGACTTTTAAGAGGGCTCCACCTGCTGTCAATTCTACCAATGAGAATGAGGATTGTACGCTGTGCGTTGGTAATTCAGTGAACATGGTCTTGTATTGCGGGCATCAGGTGCTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

383

Amino Acids

42.34

Weight (kDa)

8.51

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	139 - 338	1.4e-61	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024268)

Species	Orthologous Gene IDs
malus_domestica	MD14G1024200.v1.1
pyrus_communis	pycom14g02350
rosa_multiflora	Rmu_co8240307.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1060
Acc36I	ACCTGC	2 cut(s)	635, 1060
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccBSI	CCGCTC	1 cut(s)	738
AccII	CGCG	1 cut(s)	458
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	3 cut(s)	196, 738, 1128
AcoI	YGGCCR	2 cut(s)	678, 706
AcsI	RAATTY	5 cut(s)	93, 149, 904, 956, 981
AcuI	CTGAAG	2 cut(s)	291, 541
AfaI	GTAC	1 cut(s)	1087
AfiI	CCNNNNNNNGG	3 cut(s)	304, 430, 518
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	6 cut(s)	100, 189, 234, 323, 674, 785
AjnI	CCWGG	1 cut(s)	836
AleI	CACNNNNGTG	1 cut(s)	426
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	266, 285, 417, 745
AluI	AGCT	4 cut(s)	266, 285, 417, 745
Alw26I	GTCTC	4 cut(s)	219, 338, 345, 847
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	4 cut(s)	224, 678, 706, 951
ApoI	RAATTY	5 cut(s)	93, 149, 904, 956, 981
AspS9I	GGNCC	2 cut(s)	647, 833
AsuHPI	GGTGA	3 cut(s)	319, 839, 872
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	647, 833
BaeGI	GKGCMC	1 cut(s)	936
BalI	TGGCCA	2 cut(s)	680, 708
BanII	GRGCYC	1 cut(s)	1048
BbsI	GAAGAC	2 cut(s)	547, 770
BccI	CCATC	2 cut(s)	566, 824
BciT130I	CCWGG	1 cut(s)	838
BcoDI	GTCTC	4 cut(s)	219, 338, 345, 847
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	613
BfuAI	ACCTGC	2 cut(s)	635, 1060
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	2 cut(s)	647, 833
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	647, 833
BmiI	GGNNCC	2 cut(s)	835, 1047
BmrFI	CCNGG	1 cut(s)	838
BmsI	GCATC	4 cut(s)	170, 520, 763, 1141
BpiI	GAAGAC	2 cut(s)	547, 770
BsaJI	CCNNGG	3 cut(s)	480, 836, 837
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 430, 518
Bse118I	RCCGGY	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	385, 592
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	838
BseDI	CCNNGG	3 cut(s)	480, 836, 837
BseGI	GGATG	2 cut(s)	185, 577
BseLI	CCNNNNNNNGG	3 cut(s)	304, 430, 518
BseMI	GCAATG	2 cut(s)	385, 592
BseMII	CTCAG	2 cut(s)	293, 326
BseSI	GKGCMC	1 cut(s)	936
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	4 cut(s)	226, 680, 708, 953
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	133, 569
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	304, 430, 518
BsmAI	GTCTC	4 cut(s)	219, 338, 345, 847
BsmBI	CGTCTC	2 cut(s)	219, 338
BsmFI	GGGAC	1 cut(s)	854
BsnI	GGCC	4 cut(s)	226, 680, 708, 953
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	936, 1048
Bsp13I	TCCGGA	1 cut(s)	568
BspACI	CCGC	3 cut(s)	196, 738, 1128
BspANI	GGCC	4 cut(s)	226, 680, 708, 953
BspCNI	CTCAG	2 cut(s)	292, 325
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	835, 1047
BspMI	ACCTGC	2 cut(s)	635, 1060
BsrBI	CCGCTC	1 cut(s)	738
BsrDI	GCAATG	2 cut(s)	385, 592
BsrFI	RCCGGY	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	480, 836, 837
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	838
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	2 cut(s)	692, 845
BstAPI	GCANNNNNTGC	2 cut(s)	582, 1138
BstC8I	GCNNGC	5 cut(s)	264, 419, 578, 790, 1130
BstDEI	CTNAG	2 cut(s)	279, 312
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	185, 577
BstFNI	CGCG	1 cut(s)	458
BstMAI	GTCTC	4 cut(s)	219, 338, 345, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	582, 751, 1052, 1138
BstNI	CCWGG	1 cut(s)	838
BstNSI	RCATGY	2 cut(s)	14, 329
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	936
BstUI	CGCG	1 cut(s)	458
BstV2I	GAAGAC	2 cut(s)	547, 770
BsuRI	GGCC	4 cut(s)	226, 680, 708, 953
BtsCI	GGATG	2 cut(s)	185, 577
BtsIMutI	CAGTG	2 cut(s)	433, 1113
BveI	ACCTGC	2 cut(s)	635, 1060
Cac8I	GCNNGC	5 cut(s)	264, 419, 578, 790, 1130
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	647, 833
Csp6I	GTAC	1 cut(s)	1086
CviAII	CATG	9 cut(s)	11, 38, 326, 513, 542, 682, 716, 847, 1114
CviQI	GTAC	1 cut(s)	1086
DdeI	CTNAG	2 cut(s)	279, 312
EaeI	YGGCCR	2 cut(s)	678, 706
Eam1104I	CTCTTC	2 cut(s)	692, 845
EarI	CTCTTC	2 cut(s)	692, 845
Eco130I	CCWWGG	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	1048
Eco32I	GATATC	2 cut(s)	245, 462
Eco47I	GGWCC	2 cut(s)	647, 833
Eco57I	CTGAAG	2 cut(s)	291, 541
Eco88I	CYCGRG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	836
EcoRV	GATATC	2 cut(s)	245, 462
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	1048
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	2 cut(s)	219, 338
FaeI	CATG	9 cut(s)	14, 41, 329, 516, 545, 685, 719, 850, 1117
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	9 cut(s)	10, 37, 325, 512, 541, 681, 715, 846, 1113
FauI	CCCGC	2 cut(s)	189, 1121
FokI	GGATG	2 cut(s)	192, 584
FriOI	GRGCYC	1 cut(s)	1048
FspBI	CTAG	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	226, 680, 708, 953
HapII	CCGG	2 cut(s)	133, 569
Hin1II	CATG	9 cut(s)	14, 41, 329, 516, 545, 685, 719, 850, 1117
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	4 cut(s)	41, 310, 338, 863
HpaII	CCGG	2 cut(s)	133, 569
HphI	GGTGA	3 cut(s)	319, 839, 872
Hpy166II	GTNNAC	2 cut(s)	387, 1111
Hpy188I	TCNGA	4 cut(s)	271, 282, 975, 1032
Hpy188III	TCNNGA	4 cut(s)	138, 320, 335, 569
Hpy8I	GTNNAC	2 cut(s)	387, 1111
HpyAV	CCTTC	5 cut(s)	237, 390, 943, 948, 996
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	8 cut(s)	80, 121, 183, 421, 585, 644, 662, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	582, 751, 1052, 1138
HpyF3I	CTNAG	2 cut(s)	279, 312
Hsp92II	CATG	9 cut(s)	14, 41, 329, 516, 545, 685, 719, 850, 1117
Kpn2I	TCCGGA	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	1051
LweI	GCATC	4 cut(s)	170, 520, 763, 1141
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	3 cut(s)	307, 860, 919
MbiI	CCGCTC	1 cut(s)	738
MboII	GAAGA	8 cut(s)	222, 284, 423, 547, 560, 709, 775, 862
MfeI	CAATTG	1 cut(s)	768
MhlI	GDGCHC	2 cut(s)	936, 1048
MlsI	TGGCCA	2 cut(s)	680, 708
MluNI	TGGCCA	2 cut(s)	680, 708
MlyI	GAGTC	3 cut(s)	304, 347, 857
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	125, 160, 195, 490, 589, 810, 1035, 1072
Mox20I	TGGCCA	2 cut(s)	680, 708
Mph1103I	ATGCAT	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	568
MscI	TGGCCA	2 cut(s)	680, 708
MseI	TTAA	4 cut(s)	303, 405, 506, 1038
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	2 cut(s)	680, 708
MspI	CCGG	2 cut(s)	133, 569
MspR9I	CCNGG	1 cut(s)	838
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	838
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	4 cut(s)	582, 751, 1052, 1138
NlaIII	CATG	9 cut(s)	14, 41, 329, 516, 545, 685, 719, 850, 1117
NlaIV	GGNNCC	2 cut(s)	835, 1047
NmuCI	GTSAC	3 cut(s)	307, 860, 919
NsiI	ATGCAT	1 cut(s)	185
NspI	RCATGY	2 cut(s)	14, 329
OliI	CACNNNNGTG	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	335
PaqCI	CACCTGC	1 cut(s)	1060
PasI	CCCWGGG	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	226
PciI	ACATGT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	518
PleI	GAGTC	3 cut(s)	304, 346, 857
PpsI	GAGTC	3 cut(s)	304, 346, 857
PscI	ACATGT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	836
PspN4I	GGNNCC	2 cut(s)	835, 1047
PspPI	GGNCC	2 cut(s)	647, 833
PstNI	CAGNNNCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	1087
RsaNI	GTAC	1 cut(s)	1086
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	303, 405, 506, 1038
Sau96I	GGNCC	2 cut(s)	647, 833
SchI	GAGTC	3 cut(s)	304, 347, 857
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	2 cut(s)	936, 1048
SfaNI	GCATC	4 cut(s)	170, 520, 763, 1141
SfcI	CTRYAG	1 cut(s)	613
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	2 cut(s)	647, 833
SlaI	CTCGAG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	3 cut(s)	196, 738, 1128
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	336, 492
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	4 cut(s)	303, 405, 506, 1038
Tru9I	TTAA	4 cut(s)	303, 405, 506, 1038
TscAI	CASTG	2 cut(s)	433, 1113
TseFI	GTSAC	3 cut(s)	307, 860, 919
Tsp45I	GTSAC	3 cut(s)	307, 860, 919
TspDTI	ATGAA	7 cut(s)	17, 54, 465, 561, 645, 863, 992
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	2 cut(s)	433, 1113
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	647, 833
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	5 cut(s)	93, 149, 904, 956, 981
XbaI	TCTAGA	1 cut(s)	137
XceI	RCATGY	2 cut(s)	14, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	335
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.