pycom14g03010

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0028631
Physical Location & Seq
Reverse (-)
2334186 .. 2334853
668 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03010.1

Sequence Viewer

Length: 528 bp
ATGCTTGAGTCTCCGCCGATATTTGGTGACAAATTGATCTTTGAAGATATTTATAGGGATCTTAAGCATGGTTGTAGTCCTAGTCACGTTCATAATCAAGAGATGGATACGAAAATTCTACTCTGCTATGCATTGAGAATTTTGTTATGTTGTACCTTCATTGCTTGTATTTCCACGGCGTCTCACACCATCTCTCCAGGCCAATCTCTTTCCAGGGGACAAACAATCACCTCTCCAAGTGGAACGTTTGAGCTCGGTTTCTACAAACCAGGTATACCTCAAAACTATTACATAGGCATTTGGCACAAAAATCTAACCATTAAGACCGTAGTTTGGGTCCAAAGCTTCTTGACAATGGGAACTTTGTTATTAACAGATGCATTCGATTCATCCGTTGTTATATGGCAGAGTTTCGATCACCTGACGGATACTTGGCTGCCGGGTGCTGAGCTTAGATACAATAATCGAACCAAGAGAAAACAAGTTCTTAGAACCCCGAGAAACCTGGAAAATCCTGCAATGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

8.29

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 100 - 164 6.7e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028631)

Species Orthologous Gene IDs
malus_domestica MD01G1070900.v1.1
pyrus_communis pycom14g03010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 274
AciI CCGC 1 cut(s) 14
AclI AACGTT 1 cut(s) 245
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 2 cut(s) 114, 138
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 23, 333
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 4 cut(s) 196, 212, 268, 504
AluBI AGCT 3 cut(s) 253, 345, 451
AluI AGCT 3 cut(s) 253, 345, 451
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 15, 186
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 2 cut(s) 114, 138
AspS9I GGNCC 1 cut(s) 337
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 3 cut(s) 38, 220, 410
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 97, 197
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 4 cut(s) 198, 214, 270, 506
BciVI GTATCC 2 cut(s) 100, 421
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 15, 186
BfaI CTAG 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 62
BfuI GTATCC 2 cut(s) 100, 421
BisI GCNGC 1 cut(s) 437
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 5 cut(s) 198, 214, 270, 441, 506
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 5 cut(s) 198, 214, 270, 441, 506
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 180
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 174, 213
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 333
Bse3DI GCAATG 2 cut(s) 159, 525
BseBI CCWGG 4 cut(s) 198, 214, 270, 506
BseDI CCNNGG 2 cut(s) 174, 213
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 2 cut(s) 23, 333
BseMI GCAATG 2 cut(s) 159, 525
BseMII CTCAG 1 cut(s) 438
BseXI GCAGC 1 cut(s) 423
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 23, 333
BsmAI GTCTC 2 cut(s) 15, 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 231
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 36, 58, 415
Bsp1720I GCTNAGC 1 cut(s) 447
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 338
BspPI GGATC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 159, 525
BssECI CCNNGG 2 cut(s) 174, 213
BssMI GATC 3 cut(s) 36, 58, 415
BssNAI GTATAC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 275
Bst2UI CCWGG 4 cut(s) 198, 214, 270, 506
Bst4CI ACNGT 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 179
BstAFI CTTAAG 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 447, 452, 488
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 389
BstKTI GATC 3 cut(s) 39, 61, 418
BstMAI GTCTC 2 cut(s) 15, 186
BstMBI GATC 3 cut(s) 36, 58, 415
BstNI CCWGG 4 cut(s) 198, 214, 270, 506
BstSCI CCNGG 5 cut(s) 196, 212, 268, 439, 504
BstV1I GCAGC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZ17I GTATAC 1 cut(s) 275
BsuI GTATCC 2 cut(s) 100, 421
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 337
CseI GACGC 1 cut(s) 168
CsiI ACCWGGT 1 cut(s) 268
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 68
CviJI RGCY 5 cut(s) 201, 253, 345, 436, 451
CviKI_1 RGCY 5 cut(s) 201, 253, 345, 436, 451
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 447, 452, 488
DpnI GATC 3 cut(s) 38, 60, 417
DpnII GATC 3 cut(s) 36, 58, 415
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 4 cut(s) 196, 212, 268, 504
EcoT22I ATGCAT 2 cut(s) 133, 382
EcoT38I GRGCYC 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 71
FaiI YATR 9 cut(s) 54, 69, 93, 129, 148, 275, 293, 401, 403
FaqI GGGAC 1 cut(s) 231
FatI CATG 1 cut(s) 67
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 2 cut(s) 8, 386
HpaII CCGG 1 cut(s) 440
HphI GGTGA 3 cut(s) 38, 220, 410
Hpy166II GTNNAC 1 cut(s) 275
Hpy188III TCNNGA 2 cut(s) 98, 349
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 87, 245
HpyCH4V TGCA 3 cut(s) 131, 380, 518
HpyF3I CTNAG 3 cut(s) 447, 452, 488
HpySE526I ACGT 2 cut(s) 87, 245
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 1 cut(s) 71
Kzo9I GATC 3 cut(s) 36, 58, 415
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 367
MabI ACCWGGT 1 cut(s) 268
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 87, 245
MaeIII GTNAC 2 cut(s) 26, 83
MalI GATC 3 cut(s) 38, 60, 417
MboI GATC 3 cut(s) 36, 58, 415
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 3 cut(s) 32, 114, 138
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 2 cut(s) 241, 288
Mph1103I ATGCAT 2 cut(s) 133, 382
MseI TTAA 3 cut(s) 63, 321, 371
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 5 cut(s) 198, 214, 270, 441, 506
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 4 cut(s) 198, 214, 270, 506
NciI CCSGG 1 cut(s) 441
NdeII GATC 3 cut(s) 36, 58, 415
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 2 cut(s) 26, 83
NsiI ATGCAT 2 cut(s) 133, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 438
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 245
Psp6I CCWGG 4 cut(s) 196, 212, 268, 504
PspGI CCWGG 4 cut(s) 196, 212, 268, 504
PspN4I GGNNCC 1 cut(s) 338
PspPI GGNCC 1 cut(s) 337
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 63, 321, 371
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 36, 58, 415
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 5 cut(s) 198, 214, 270, 441, 506
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 5, 62
SmoI CTYRAG 2 cut(s) 5, 62
Sse9I AATT 3 cut(s) 32, 114, 138
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 5 cut(s) 196, 212, 268, 439, 504
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 90, 248
TaqI TCGA 3 cut(s) 384, 414, 466
TasI AATT 3 cut(s) 32, 114, 138
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 63, 321, 371
Tru9I TTAA 3 cut(s) 63, 321, 371
TseFI GTSAC 2 cut(s) 26, 83
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 2 cut(s) 26, 83
TspDTI ATGAA 3 cut(s) 80, 148, 378
TspGWI ACGGA 2 cut(s) 382, 440
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 337
XapI RAATTY 2 cut(s) 114, 138
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 2 cut(s) 133, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.