Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0024694

Physical Location & Seq

Genomic Coordinates Forward (+)

18639713 .. 18639976

Gene Structure 264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGACAACATCTTCGAATCACGAGCAAGAGGTGGAGAACTTGGTGCGGCATCTCTCCCCAAGTGCTAACAGGATATACCATCTATCCGGAACCCAGAAGTTTGAGTTGCCAAAACACGAGGTCAGAATTACAGATGTGTTTGAAGCAGTTGAGAACGCAAAGAGCAGGTTCACAGTTTTCGCGTGGGGTCTAGCTGACACCACACTGGAGGATGTCTTCATCAAGGTTGCACTTGGGGCTCAATCCTCCATTGAATTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

88

Amino Acids

9.79

Weight (kDa)

5.45

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCA12_C	PF24526	1 - 47	5.5e-28	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024694)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g16340
rosa_samantha	Rh7AG037900 Rh7BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AccII	CGCG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	143, 254
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	86
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AsuII	TTCGAA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	2 cut(s)	20, 116
BbsI	GAAGAC	1 cut(s)	208
BccI	CCATC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	86
BseGI	GGATG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	1 cut(s)	86
BspACI	CCGC	1 cut(s)	46
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	210
BssSI	CACGAG	2 cut(s)	20, 116
Bst2BI	CACGAG	2 cut(s)	20, 116
Bst4CI	ACNGT	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	156
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	2 cut(s)	194, 239
CviKI_1	RGCY	2 cut(s)	194, 239
Eco24I	GRGCYC	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	1 cut(s)	264
FaiI	YATR	2 cut(s)	76, 262
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	227
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	264
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	20, 87
Hpy8I	GTNNAC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	86
LpnPI	CCDG	5 cut(s)	55, 100, 107, 151, 191
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	191
MboII	GAAGA	2 cut(s)	3, 208
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	2 cut(s)	126, 254
MnlI	CCTC	4 cut(s)	22, 112, 202, 256
MroI	TCCGGA	1 cut(s)	86
MspI	CCGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	91
SatI	GCNGC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	5 cut(s)	33, 123, 170, 196, 228
SfaNI	GCATC	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	14
Sse9I	AATT	2 cut(s)	126, 254
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	126, 254
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	210
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.