Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0024694

Physical Location & Seq

Genomic Coordinates Forward (+)

2424452 .. 2424961

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAGGAAGCAGAAGTCTTGTGTCATCGAGTAGGAAACCCAGAAGAGGTAATCGAGTTGATGATACACCATTTATCTGGAACTCAGAAGTTTGAGCTGCCTAAAAATGAGGTCAAGATAGCAGACGTCTTCAAAGCAGTAGAGATTGCAAAAACAAAGTTCACCATTTATGCATGGAATCTATCTGATGCTACATTGGAGGAAGTCTTCATCAAGGTTGCACGCGGAGCACGGGAAGCTGACCCCTTATATTGTTTCAGATACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

5.33

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCA12_C	PF24526	22 - 44	9.6e-12	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024694)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g16340
rosa_samantha	Rh7AG037900 Rh7BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	2 cut(s)	97, 239
AluI	AGCT	2 cut(s)	97, 239
Alw21I	GWGCWC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	121, 199
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	2 cut(s)	121, 199
BsaHI	GRCGYC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 236
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	2 cut(s)	121, 199
BstXI	CCANNNNNNTGG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	223
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	2 cut(s)	97, 239
CviKI_1	RGCY	2 cut(s)	97, 239
DdeI	CTNAG	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	1 cut(s)	177
FaiI	YATR	4 cut(s)	171, 175, 250, 268
FatI	CATG	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	177
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	87, 187, 260
Hpy188III	TCNNGA	2 cut(s)	78, 115
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	149, 173, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 236
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	2 cut(s)	54, 63
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	126
MboII	GAAGA	3 cut(s)	56, 121, 199
MhlI	GDGCHC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	40, 103, 193
Mph1103I	ATGCAT	1 cut(s)	175
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	227, 236
NlaIII	CATG	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	99
SatI	GCNGC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	6 cut(s)	51, 99, 114, 129, 219, 241
SfaNI	GCATC	1 cut(s)	178
SsiI	CCGC	1 cut(s)	225
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	28, 54
TfiI	GAWTC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	199
ZraI	GACGTC	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.