Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0024694

Physical Location & Seq

Genomic Coordinates Forward (+)

2580721 .. 2582421

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGAAGTTTATGTTTACACGGCAACAACATCTTCCGTTCATGAGGGCGATGGGAAAAATAGTGCAAACTTCATCTCCTAATGCTAAGAAGATGCACCATTTATCTGGAACTCAGAAGTTTGAGCTGCCTAAAAATGAGGTCAAGATAGCAGACGTCTTCAAAGCAGTAGAGATTGCAAAAACAAAGTTCACCATTTATGCATGGAATCTATCTGATGCTACATTGGAGGAAGTCTTCATCAAGGTTGCACGTGGAGTACAGGAAGCTGACCCCTTATATTGTTTCAGATACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko02010 map02010

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

99

Amino Acids

11.51

Weight (kDa)

9.48

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCA12_C	PF24526	16 - 54	5.5e-17	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024694)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g16340
rosa_samantha	Rh7AG037900 Rh7BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AcvI	CACGTG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	2 cut(s)	127, 269
AluI	AGCT	2 cut(s)	127, 269
ApeKI	GCWGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	184
BbrPI	CACGTG	1 cut(s)	254
BbsI	GAAGAC	2 cut(s)	151, 229
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmsI	GCATC	2 cut(s)	84, 208
BpiI	GAAGAC	2 cut(s)	151, 229
BsaAI	YACGTR	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
BseMII	CTCAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	87, 114
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	151, 229
BstXI	CCANNNNNNTGG	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	65
CciI	TCATGA	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	43, 204
CviJI	RGCY	2 cut(s)	127, 269
CviKI_1	RGCY	2 cut(s)	127, 269
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	87, 114
Eco72I	CACGTG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	2 cut(s)	46, 207
FaiI	YATR	5 cut(s)	14, 44, 201, 205, 280
FatI	CATG	2 cut(s)	42, 203
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	46, 207
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	18, 192
Hpy188I	TCNGA	3 cut(s)	117, 217, 290
Hpy188III	TCNNGA	3 cut(s)	43, 108, 145
Hpy8I	GTNNAC	2 cut(s)	18, 192
HpyCH4IV	ACGT	2 cut(s)	156, 253
HpyCH4V	TGCA	5 cut(s)	67, 97, 179, 203, 251
HpyF3I	CTNAG	2 cut(s)	87, 114
HpySE526I	ACGT	2 cut(s)	156, 253
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	46, 207
LpnPI	CCDG	2 cut(s)	93, 248
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	84, 208
MaeII	ACGT	2 cut(s)	156, 253
MboII	GAAGA	4 cut(s)	26, 103, 151, 229
MnlI	CCTC	3 cut(s)	39, 133, 223
Mph1103I	ATGCAT	1 cut(s)	205
NlaIII	CATG	2 cut(s)	46, 207
NsiI	ATGCAT	1 cut(s)	205
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	129
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PspCI	CACGTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	128
SetI	ASST	6 cut(s)	129, 144, 159, 249, 256, 271
SfaNI	GCATC	2 cut(s)	84, 208
SgeI	CNNG	9 cut(s)	33, 55, 120, 157, 216, 256, 264, 266, 275
TaiI	ACGT	2 cut(s)	159, 256
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	31, 63, 229
TspGWI	ACGGA	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.