Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0024695

Physical Location & Seq

Genomic Coordinates Reverse (-)

21611355 .. 21611981

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCTGCCTTGCCCAGGACCCTGATAGCAAGGTTGCCTGTGAGACATGCCACCAAAACCAACATGGTCATGGTGTTTGGAGAGATCACTACCAAGGCCAATGTTGACTATGAGAAGATTGTCCGTGACACTTGCCGTGCCATTGGATTTGTTTCTGATGACGTGGGTCTTGATGCCGAAAACTGCAAGGTCCTGGTTAACATTGAGCAGCAGAGCCCAGATATTGCCCAGGGCGTTCATGGTCACTTTACCAAGCGACCTGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTCGGATATGCCACTGACGAAACCCCTGAATTGATGCCTCTTAGCCATGTGCTTTCCACCAAGCTTGGTGCTCGCCTCACTGAGGTCAGGAAGAATGGTACCTGCCCCTGGTTGAGACCCGACGGCAAGACCCAAGTTACCGTTGAGTACTACAACGAAAACGGAGCTATGGTTCCAGTGCGTGTCCACACCGTCCTTATCTCCACCCAGCATGATGAGACTGTCACAAACGATGAGATTGCCACTGACCTCAAGGAGCATGTCATTAAGCCTGTTGTCCCTGAGAAGTATCTTGATGCACAATATGGAGAACATTTTGGTAAAATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004478 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016740 GO:0016765 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

209

Amino Acids

23.14

Weight (kDa)

5.7

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-AdoMet_synt_N	PF00438	10 - 73	4.5e-15	S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M	PF02772	89 - 199	1.8e-43	S-adenosylmethionine synthetase, central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024695)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g20580 pycom16g12220
rosa_wichuraiana	Rw4G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AfaI	GTAC	2 cut(s)	394, 443
AfiI	CCNNNNNNNGG	3 cut(s)	15, 376, 402
AflIII	ACRYGT	1 cut(s)	291
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	5 cut(s)	14, 192, 228, 282, 401
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	2 cut(s)	358, 461
AluI	AGCT	2 cut(s)	358, 461
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	3 cut(s)	37, 403, 506
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	208
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	18, 190
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	18, 190
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	120, 433
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	5 cut(s)	16, 194, 230, 284, 403
BcoDI	GTCTC	3 cut(s)	37, 403, 506
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	5 cut(s)	16, 194, 230, 284, 403
Bme18I	GGWCC	2 cut(s)	18, 190
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	18, 190
BmiI	GGNNCC	3 cut(s)	20, 394, 468
BmrFI	CCNGG	5 cut(s)	16, 194, 230, 284, 403
BmsI	GCATC	3 cut(s)	163, 318, 580
BoxI	GACNNNNGTC	2 cut(s)	165, 285
BpuEI	CTTGAG	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	6 cut(s)	14, 93, 228, 229, 283, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 376, 402
Bse1I	ACTGG	1 cut(s)	470
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	5 cut(s)	16, 194, 230, 284, 403
BseDI	CCNNGG	6 cut(s)	14, 93, 228, 229, 283, 401
BseLI	CCNNNNNNNGG	3 cut(s)	15, 376, 402
BseMII	CTCAG	3 cut(s)	252, 366, 567
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	501
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	3 cut(s)	15, 376, 402
BsmAI	GTCTC	3 cut(s)	37, 403, 506
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	218, 367
Bsp143I	GATC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	253, 367, 568
BspHI	TCATGA	1 cut(s)	623
BspLI	GGNNCC	3 cut(s)	20, 394, 468
BspMI	ACCTGC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	6 cut(s)	14, 93, 228, 229, 283, 401
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	5 cut(s)	16, 194, 230, 284, 403
Bst4CI	ACNGT	3 cut(s)	436, 487, 517
BstC8I	GCNNGC	2 cut(s)	6, 367
BstDEI	CTNAG	4 cut(s)	261, 335, 375, 576
BstEII	GGTNACC	1 cut(s)	278
BstENI	CCTNNNNNAGG	2 cut(s)	13, 374
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	3 cut(s)	37, 403, 506
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	5 cut(s)	16, 194, 230, 284, 403
BstNSI	RCATGY	3 cut(s)	50, 295, 557
BstPAI	GACNNNNGTC	2 cut(s)	165, 285
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	5 cut(s)	14, 192, 228, 282, 401
BstV1I	GCAGC	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	163
BtsIMutI	CAGTG	4 cut(s)	306, 372, 477, 537
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	6, 367
CciI	TCATGA	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	18, 190
Csp6I	GTAC	2 cut(s)	393, 442
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	9 cut(s)	47, 64, 70, 239, 292, 341, 506, 554, 624
CviJI	RGCY	6 cut(s)	98, 216, 339, 358, 461, 565
CviKI_1	RGCY	6 cut(s)	98, 216, 339, 358, 461, 565
CviQI	GTAC	2 cut(s)	393, 442
DdeI	CTNAG	4 cut(s)	261, 335, 375, 576
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	18, 190
Eco81I	CCTNAGG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	2 cut(s)	13, 374
EcoO109I	RGGNCCY	2 cut(s)	18, 190
EcoO65I	GGTNACC	1 cut(s)	278
EcoRII	CCWGG	5 cut(s)	14, 192, 228, 282, 401
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	9 cut(s)	50, 67, 73, 242, 295, 344, 509, 557, 627
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	9 cut(s)	46, 63, 69, 238, 291, 340, 505, 553, 623
Fnu4HI	GCNGC	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	9 cut(s)	50, 67, 73, 242, 295, 344, 509, 557, 627
HincII	GTYRAC	2 cut(s)	106, 199
HindII	GTYRAC	2 cut(s)	106, 199
HindIII	AAGCTT	1 cut(s)	356
HpaI	GTTAAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	106, 199, 481
Hpy188I	TCNGA	2 cut(s)	157, 299
Hpy188III	TCNNGA	4 cut(s)	170, 382, 587, 624
Hpy8I	GTNNAC	3 cut(s)	106, 199, 481
Hpy99I	CGWCG	1 cut(s)	419
HpyCH4III	ACNGT	3 cut(s)	436, 487, 517
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	186, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	4 cut(s)	261, 335, 375, 576
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	9 cut(s)	50, 67, 73, 242, 295, 344, 509, 557, 627
KpnI	GGTACC	1 cut(s)	396
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	458, 550
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	163, 318, 580
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	6 cut(s)	125, 242, 278, 287, 430, 517
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	2 cut(s)	127, 397
MhlI	GDGCHC	2 cut(s)	218, 367
MluCI	AATT	1 cut(s)	323
MnlI	CCTC	5 cut(s)	256, 342, 370, 380, 554
MseI	TTAA	2 cut(s)	198, 561
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	5 cut(s)	16, 194, 230, 284, 403
MvaI	CCWGG	5 cut(s)	16, 194, 230, 284, 403
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	9 cut(s)	50, 67, 73, 242, 295, 344, 509, 557, 627
NlaIV	GGNNCC	3 cut(s)	20, 394, 468
NmuCI	GTSAC	5 cut(s)	125, 242, 278, 287, 517
NspI	RCATGY	3 cut(s)	50, 295, 557
PagI	TCATGA	1 cut(s)	623
PasI	CCCWGGG	1 cut(s)	229
PciI	ACATGT	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	210
PpuMI	RGGWCCY	2 cut(s)	18, 190
PscI	ACATGT	1 cut(s)	291
PshAI	GACNNNNGTC	2 cut(s)	165, 285
Psp5II	RGGWCCY	2 cut(s)	18, 190
Psp6I	CCWGG	5 cut(s)	14, 192, 228, 282, 401
PspEI	GGTNACC	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	5 cut(s)	14, 192, 228, 282, 401
PspN4I	GGNNCC	3 cut(s)	20, 394, 468
PspPI	GGNCC	2 cut(s)	18, 190
PspPPI	RGGWCCY	2 cut(s)	18, 190
RsaI	GTAC	2 cut(s)	394, 443
RsaNI	GTAC	2 cut(s)	393, 442
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	198, 561
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	18, 190
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	5 cut(s)	16, 194, 230, 284, 403
SduI	GDGCHC	2 cut(s)	218, 367
SetI	ASST	9 cut(s)	35, 165, 192, 262, 360, 381, 398, 463, 546
SfaNI	GCATC	3 cut(s)	163, 318, 580
SinI	GGWCC	2 cut(s)	18, 190
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	1 cut(s)	323
StyD4I	CCNGG	5 cut(s)	14, 192, 228, 282, 401
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	436, 487, 517
TaiI	ACGT	1 cut(s)	165
TasI	AATT	1 cut(s)	323
TatI	WGTACW	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	198, 561
Tru9I	TTAA	2 cut(s)	198, 561
TscAI	CASTG	4 cut(s)	313, 379, 477, 544
TseFI	GTSAC	5 cut(s)	125, 242, 278, 287, 517
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	5 cut(s)	125, 242, 278, 287, 517
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	113, 471
TspRI	CASTG	4 cut(s)	313, 379, 477, 544
VpaK11BI	GGWCC	2 cut(s)	18, 190
XagI	CCTNNNNNAGG	2 cut(s)	13, 374
XceI	RCATGY	3 cut(s)	50, 295, 557
XcmI	CCANNNNNNNNNTGG	3 cut(s)	61, 67, 236
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.