Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0024695

Physical Location & Seq

Genomic Coordinates Forward (+)

49182517 .. 49185267

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G023580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTCTTGAGACCTTCTTGTTCACCTCTGAGTCCGTCAATGAGGGTCACCCAGACAAGCTCTGCGACCAGATCTCCGACGCCGTGCTCGACGCCTGCCTAGCTCAGGACGCCGACAGCAAGGTGGCTTGCGAGACCTGCACCAAGACCAACATGGTCATGGTGTTCGGTGAGATCACCACCAAGGCTAATGTGGACTACGAGAAGATCGTCCGTGACACTTGCCGCAACATTGGGTTCGTGTCGGCCGACGTGGGTCTTGATGCCGATAACTGCAAGGTGCTCGTCAACATTGAGCAGCAGAGCCCTGATATTGCCCAAGGTGTCCATGGCCATTTGACCAAGAGGCCCGAGGAGATTGGAGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACTGATGAGACCCCAGAGTTGATGCCTCTCAGCCATGTGCTCGCAACCAAGCTCGGTGCTAAGCTCACCGAAGTTCGCAAGAATGGTACTTGCGCATGGTTGAGGCCTGATGGCAAGACCCAAGTCACCGTTGAGTACTTCAATGAGAAGGGTGCTATGGTTCCAAGCTTCCATCAGTTTCTTCTTTCTTCTACGGCCATCGGATGCTTCTCTCTTCTGTTGGTTTCTCTCTTCCTCCTTTCTCACCATCACTTACTACGACATGGAAGAAGTACAGCAGCACTGCAACCACACATAGCTGGCAGTGACACTGGACGGAGCTCCCTGACATTGCCACGGAGTCGAAATTTTCCATACGACCTGGAGATTATGTGCGGCCAGTTGCCACGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004478 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016020 GO:0016740 GO:0016765 GO:0019438 GO:0019748 GO:0019752 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

263

Amino Acids

28.81

Weight (kDa)

5.74

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-AdoMet_synt_N	PF00438	6 - 103	3.1e-43	S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M	PF02772	119 - 182	5e-28	S-adenosylmethionine synthetase, central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024695)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g20580 pycom16g12220
rosa_wichuraiana	Rw4G023580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	146
AciI	CCGC	2 cut(s)	226, 771
AcoI	YGGCCR	4 cut(s)	246, 331, 591, 772
AcsI	RAATTY	1 cut(s)	742
AcyI	GRCGYC	3 cut(s)	81, 93, 111
AfaI	GTAC	3 cut(s)	484, 533, 670
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	8 cut(s)	61, 104, 365, 448, 460, 564, 695, 717
AluI	AGCT	8 cut(s)	61, 104, 365, 448, 460, 564, 695, 717
Alw21I	GWGCWC	4 cut(s)	90, 285, 438, 719
Alw26I	GTCTC	3 cut(s)	5, 128, 398
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	6 cut(s)	246, 331, 347, 500, 591, 772
ApeKI	GCWGC	2 cut(s)	298, 674
ApoI	RAATTY	1 cut(s)	742
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	8 cut(s)	16, 41, 169, 182, 380, 454, 514, 632
AvaI	CYCGRG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	308, 719
Bbv12I	GWGCWC	4 cut(s)	90, 285, 438, 719
BbvI	GCAGC	2 cut(s)	310, 686
BccI	CCATC	4 cut(s)	500, 576, 602, 651
BceAI	ACGGC	3 cut(s)	68, 606, 771
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	758
BcoDI	GTCTC	3 cut(s)	5, 128, 398
BfaI	CTAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	4 cut(s)	226, 299, 675, 772
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	4 cut(s)	227, 300, 676, 773
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	758
BmsI	GCATC	3 cut(s)	253, 408, 590
BoxI	GACNNNNGTC	3 cut(s)	255, 375, 518
BpmI	CTGGAG	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	29
BsaHI	GRCGYC	3 cut(s)	81, 93, 111
BsaI	GGTCTC	3 cut(s)	5, 128, 398
BsaJI	CCNNGG	6 cut(s)	183, 319, 328, 351, 373, 731
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 752, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	712, 775
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	6 cut(s)	183, 319, 328, 351, 373, 731
BseGI	GGATG	1 cut(s)	605
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	3 cut(s)	21, 119, 439
BseNI	ACTGG	2 cut(s)	712, 775
BseRI	GAGGAG	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	310, 686
BsgI	GTGCAG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	6 cut(s)	248, 333, 349, 502, 593, 774
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	4 cut(s)	90, 285, 438, 719
BsiHKCI	CYCGRG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	3 cut(s)	5, 128, 398
BsnI	GGCC	6 cut(s)	248, 333, 349, 502, 593, 774
Bso31I	GGTCTC	3 cut(s)	5, 128, 398
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	5 cut(s)	90, 285, 308, 438, 719
Bsp143I	GATC	3 cut(s)	72, 174, 207
Bsp1720I	GCTNAGC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	2 cut(s)	226, 771
BspANI	GGCC	6 cut(s)	248, 333, 349, 502, 593, 774
BspCNI	CTCAG	3 cut(s)	22, 118, 438
BspLI	GGNNCC	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	146
BspTNI	GGTCTC	3 cut(s)	5, 128, 398
BsrDI	GCAATG	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	712, 775
BssECI	CCNNGG	6 cut(s)	183, 319, 328, 351, 373, 731
BssMI	GATC	3 cut(s)	72, 174, 207
BssNI	GRCGYC	3 cut(s)	81, 93, 111
BssT1I	CCWWGG	4 cut(s)	183, 319, 328, 373
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	2 cut(s)	615, 632
BstACI	GRCGYC	3 cut(s)	81, 93, 111
BstC8I	GCNNGC	4 cut(s)	97, 130, 438, 697
BstDEI	CTNAG	4 cut(s)	30, 105, 425, 456
BstDSI	CCRYGG	2 cut(s)	328, 731
BstEII	GGTNACC	2 cut(s)	47, 368
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	605
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	3 cut(s)	75, 177, 210
BstMAI	GTCTC	3 cut(s)	5, 128, 398
BstMBI	GATC	3 cut(s)	72, 174, 207
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 110, 138
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	385
BstPAI	GACNNNNGTC	3 cut(s)	255, 375, 518
BstPI	GGTNACC	2 cut(s)	47, 368
BstSCI	CCNGG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	310, 686
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BstZI	CGGCCG	1 cut(s)	246
BsuRI	GGCC	6 cut(s)	248, 333, 349, 502, 593, 774
BtgI	CCRYGG	2 cut(s)	328, 731
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	605
BtsI	GCAGTG	2 cut(s)	677, 706
BtsIMutI	CAGTG	4 cut(s)	396, 677, 705, 706
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	97, 130, 438, 697
CfoI	GCGC	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	348
CseI	GACGC	3 cut(s)	89, 101, 119
Csp6I	GTAC	3 cut(s)	483, 532, 669
CviAII	CATG	7 cut(s)	154, 160, 329, 382, 431, 492, 659
CviQI	GTAC	3 cut(s)	483, 532, 669
DdeI	CTNAG	4 cut(s)	30, 105, 425, 456
DpnI	GATC	3 cut(s)	74, 176, 209
DpnII	GATC	3 cut(s)	72, 174, 207
EaeI	YGGCCR	4 cut(s)	246, 331, 591, 772
EagI	CGGCCG	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	615, 632
EarI	CTCTTC	2 cut(s)	615, 632
Ecl136II	GAGCTC	1 cut(s)	717
EclXI	CGGCCG	1 cut(s)	246
Eco130I	CCWWGG	4 cut(s)	183, 319, 328, 373
Eco147I	AGGCCT	1 cut(s)	502
Eco24I	GRGCYC	2 cut(s)	308, 719
Eco31I	GGTCTC	3 cut(s)	5, 128, 398
Eco52I	CGGCCG	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	350
Eco91I	GGTNACC	2 cut(s)	47, 368
EcoICRI	GAGCTC	1 cut(s)	717
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoO65I	GGTNACC	2 cut(s)	47, 368
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	4 cut(s)	183, 319, 328, 373
EcoT38I	GRGCYC	2 cut(s)	308, 719
ErhI	CCWWGG	4 cut(s)	183, 319, 328, 373
FaeI	CATG	7 cut(s)	157, 163, 332, 385, 434, 495, 662
FatI	CATG	7 cut(s)	153, 159, 328, 381, 430, 491, 658
Fnu4HI	GCNGC	4 cut(s)	226, 299, 675, 772
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	2 cut(s)	308, 719
Fsp4HI	GCNGC	4 cut(s)	226, 299, 675, 772
FspBI	CTAG	1 cut(s)	101
FspI	TGCGCA	1 cut(s)	490
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	4 cut(s)	226, 299, 675, 772
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	6 cut(s)	248, 333, 349, 502, 593, 774
HgaI	GACGC	3 cut(s)	89, 101, 119
HhaI	GCGC	1 cut(s)	491
Hin1I	GRCGYC	3 cut(s)	81, 93, 111
Hin1II	CATG	7 cut(s)	157, 163, 332, 385, 434, 495, 662
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	2 cut(s)	32, 736
HphI	GGTGA	8 cut(s)	16, 41, 169, 182, 380, 454, 514, 632
Hpy166II	GTNNAC	3 cut(s)	24, 196, 289
Hpy188I	TCNGA	3 cut(s)	31, 79, 599
Hpy188III	TCNNGA	3 cut(s)	8, 107, 260
Hpy8I	GTNNAC	3 cut(s)	24, 196, 289
Hpy99I	CGWCG	3 cut(s)	83, 95, 254
HpyAV	CCTTC	2 cut(s)	25, 538
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	141, 276, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 110, 138
HpyF3I	CTNAG	4 cut(s)	30, 105, 425, 456
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	3 cut(s)	81, 93, 111
Hsp92II	CATG	7 cut(s)	157, 163, 332, 385, 434, 495, 662
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	72, 174, 207
LmnI	GCTCC	3 cut(s)	362, 714, 722
Lsp1109I	GCAGC	2 cut(s)	310, 686
LweI	GCATC	3 cut(s)	253, 408, 590
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	6 cut(s)	47, 215, 368, 377, 520, 701
MalI	GATC	3 cut(s)	74, 176, 209
MboI	GATC	3 cut(s)	72, 174, 207
MboII	GAAGA	6 cut(s)	217, 569, 576, 602, 619, 675
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	5 cut(s)	90, 285, 308, 438, 719
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	1 cut(s)	742
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	41, 745
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	7 cut(s)	37, 37, 339, 346, 432, 492, 641
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	758
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	101, 110, 138
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	3 cut(s)	72, 174, 207
NlaIII	CATG	7 cut(s)	157, 163, 332, 385, 434, 495, 662
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	6 cut(s)	47, 215, 368, 377, 520, 701
NsbI	TGCGCA	1 cut(s)	490
NspI	RCATGY	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	502
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 207, 246
PkrI	GCNGC	4 cut(s)	227, 300, 676, 773
PleI	GAGTC	2 cut(s)	40, 744
PpsI	GAGTC	2 cut(s)	40, 744
PscI	ACATGT	1 cut(s)	381
PshAI	GACNNNNGTC	3 cut(s)	255, 375, 518
Psp124BI	GAGCTC	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	756
PspEI	GGTNACC	2 cut(s)	47, 368
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	3 cut(s)	484, 533, 670
RsaNI	GTAC	3 cut(s)	483, 532, 669
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	719
SatI	GCNGC	4 cut(s)	226, 299, 675, 772
Sau3AI	GATC	3 cut(s)	72, 174, 207
Sau96I	GGNCC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	2 cut(s)	41, 745
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	5 cut(s)	90, 285, 308, 438, 719
SfaNI	GCATC	3 cut(s)	253, 408, 590
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	742
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	2 cut(s)	226, 771
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	719
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	756
StyI	CCWWGG	4 cut(s)	183, 319, 328, 373
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	90, 739
TasI	AATT	1 cut(s)	742
TatI	WGTACW	2 cut(s)	531, 668
TauI	GCSGC	2 cut(s)	228, 774
TscAI	CASTG	4 cut(s)	403, 684, 706, 712
TseFI	GTSAC	6 cut(s)	47, 215, 368, 377, 520, 701
TseI	GCWGC	2 cut(s)	298, 674
Tsp45I	GTSAC	6 cut(s)	47, 215, 368, 377, 520, 701
TspGWI	ACGGA	4 cut(s)	25, 203, 727, 748
TspRI	CASTG	4 cut(s)	403, 684, 706, 712
XagI	CCTNNNNNAGG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	4 cut(s)	151, 157, 190, 326
XspI	CTAG	1 cut(s)	101
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.