Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024296

Physical Location & Seq

Genomic Coordinates Forward (+)

820573 .. 821865

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTTGACAAAATGGATGGGGAGGAGAAGAAGTCCGGCCTTAAGATAAGATCGAAGTTTGTCAAGGCGAATATGGTTGATTCTGAGGATGATGAGCCAATTGGGTCACTTTTGAAGTTGAAGAGGCAGAGAAACCTTAGGAAGGTTAAGGGTGGCGGCGAAAGGGGCAAGATGGTTGACGATGAAGAAGAGGATTTGGGGGGCCTGGATGATACTTTGGCAAGTTTGAGGAAGAAGTTGAAGGGTCCCAAGAAAGATTATGGGACTGGAACTATGAGGGGAAGGAGTTTTGCTTTGGATGATGTACAGTCTGTGGATCGGTCCTCTAATGGGCATGTGGACGATGGGGATTTGGATGGAAAATTGGTGTCAAGGGTTTTAGAGAAAGATCCTGTTATGGGTGATGATGGATCTGATGTGACTATCAATATAGAGGTAGAAAACAAGCTTAATGGAAAGGGAAAGAGACCCAAGATTTCAGGGTCTCTGGGATTTGGGGAAGGTTCTAATTGCCTTTTGGATCATCATCCGGAAGATTCATTATCAGCATTTTCCCGGAAGTCACAATCTGGTTTGATTATGAATTCTCGTGCCTCTTCAAGCCCTAAAGAGAAGAGTGGTTCTAAGGTTTTGGAGGATGGGTTGAACACCATGCCTTTGGTTTGTTCAAATCCATTGGATTCCTCTGATCAGTGTAAGGAAGATGAAAGTCAAAATTTTGATGACAGAGCCTCTAACCGTCACAGGGAAAATCAAGAGACATTCGATGATAAAAAGCATAAAAGGCCCTACAAAGTCGTTTCAGAAGATCGAGTTCCTCTCTACTCACATTCAGGATTTGATTCCAAATTGATTAACAATGAAGCCATAGTGGATCCTTCTGGTTCAAATTTTCAAGAGGGACCATGCAACTCAGATGAAGTTAATGATGGAGGCAAAAAACATTTGACGCAGCAAATGCAAACTTTTGAGGATGGATTGAAGAACTGCTCTATGGGAGGTAATTGTAATGGTCTAATTTCTTACACTAAGAATCCTGGCCTTGCTTCTGGTCCTTTGCGTGAGGAAAATGATGTTCTAAATCATGATCATCTTATCACTAGTGAAGAGGCTGATGAAAATGAGAGTTTCCCAGAAGACACAACATCTCTACCAGATGTTGAAAACAAAAACACTAAGCTATCAGCTGTCCAGCGTGTGGGGCGCATTGTTAGAAAGCGTAGGCATGGAGACATGGCTTATGAGGGGGATGCTGATTGGGAGGTATTGATAAATCGATCAAAGTTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

431

Amino Acids

47.44

Weight (kDa)

5.3

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024296)

Species	Orthologous Gene IDs
malus_domestica	MD15G1018200.v1.1
pyrus_communis	pycom08g01500 pycom15g01400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	6 cut(s)	324, 383, 418, 528, 869, 882
AcsI	RAATTY	3 cut(s)	583, 715, 889
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	5 cut(s)	142, 330, 398, 745, 1198
AflII	CTTAAG	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	1100
AjnI	CCWGG	2 cut(s)	204, 1036
AluBI	AGCT	3 cut(s)	448, 1180, 1187
AluI	AGCT	3 cut(s)	448, 1180, 1187
Alw26I	GTCTC	4 cut(s)	460, 489, 752, 1224
AlwI	GGATC	6 cut(s)	324, 383, 418, 528, 869, 882
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	4 cut(s)	37, 202, 785, 1039
ApeKI	GCWGC	1 cut(s)	952
ApoI	RAATTY	3 cut(s)	583, 715, 889
AspLEI	GCGC	1 cut(s)	1206
AspS9I	GGNCC	6 cut(s)	202, 245, 321, 786, 902, 1052
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	4 cut(s)	245, 321, 902, 1052
AxyI	CCTNAGG	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	874
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	1143
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	8 cut(s)	11, 166, 338, 350, 401, 632, 923, 968
BciT130I	CCWGG	2 cut(s)	206, 1038
BclI	TGATCA	2 cut(s)	688, 1087
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	4 cut(s)	460, 489, 752, 1224
BcuI	ACTAGT	1 cut(s)	1100
BfaI	CTAG	1 cut(s)	1101
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	2 cut(s)	157, 953
BlsI	GCNGC	2 cut(s)	158, 954
Bme1390I	CCNGG	3 cut(s)	206, 556, 1038
Bme18I	GGWCC	4 cut(s)	245, 321, 902, 1052
BmgT120I	GGNCC	6 cut(s)	202, 245, 321, 786, 902, 1052
BmiI	GGNNCC	5 cut(s)	203, 246, 247, 876, 903
BmrFI	CCNGG	3 cut(s)	206, 556, 1038
BmsI	GCATC	1 cut(s)	1240
BpiI	GAAGAC	1 cut(s)	1143
BplI	GAGNNNNNCTC	2 cut(s)	804, 836
BpuMI	CCSGG	1 cut(s)	556
Bsa29I	ATCGAT	1 cut(s)	1276
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	2 cut(s)	460, 489
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 626, 656
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 330, 398, 745, 1198
Bse1I	ACTGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	2 cut(s)	206, 1038
BseCI	ATCGAT	1 cut(s)	1276
BseGI	GGATG	9 cut(s)	22, 94, 214, 304, 361, 526, 643, 979, 1255
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	5 cut(s)	142, 330, 398, 745, 1198
BseMII	CTCAG	2 cut(s)	75, 927
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	964
BshFI	GGCC	4 cut(s)	39, 204, 787, 1041
BshVI	ATCGAT	1 cut(s)	1276
BsiSI	CCGG	3 cut(s)	36, 530, 556
BslFI	GGGAC	3 cut(s)	231, 277, 915
BslI	CCNNNNNNNGG	5 cut(s)	142, 330, 398, 745, 1198
BsmAI	GTCTC	4 cut(s)	460, 489, 752, 1224
BsmFI	GGGAC	3 cut(s)	231, 277, 915
BsnI	GGCC	4 cut(s)	39, 204, 787, 1041
Bso31I	GGTCTC	2 cut(s)	460, 489
Bsp13I	TCCGGA	1 cut(s)	529
Bsp1407I	TGTACA	1 cut(s)	304
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	4 cut(s)	39, 204, 787, 1041
BspCNI	CTCAG	2 cut(s)	76, 926
BspDI	ATCGAT	1 cut(s)	1276
BspEI	TCCGGA	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	1084
BspLI	GGNNCC	5 cut(s)	203, 246, 247, 876, 903
BspPI	GGATC	6 cut(s)	324, 383, 418, 528, 869, 882
BspTI	CTTAAG	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	460, 489
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	206, 1038
Bst4CI	ACNGT	2 cut(s)	309, 740
Bst6I	CTCTTC	5 cut(s)	116, 183, 601, 608, 1101
BstAFI	CTTAAG	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	958
BstAUI	TGTACA	1 cut(s)	304
BstDEI	CTNAG	6 cut(s)	84, 137, 624, 913, 1029, 1176
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	9 cut(s)	22, 94, 214, 304, 361, 526, 643, 979, 1255
BstHHI	GCGC	1 cut(s)	1206
BstMAI	GTCTC	4 cut(s)	460, 489, 752, 1224
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 784, 958, 1201
BstNI	CCWGG	2 cut(s)	206, 1038
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	204, 554, 1036
BstV1I	GCAGC	1 cut(s)	964
BstV2I	GAAGAC	1 cut(s)	1143
BstX2I	RGATCY	3 cut(s)	388, 410, 874
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	3 cut(s)	388, 410, 874
Bsu15I	ATCGAT	1 cut(s)	1276
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	39, 204, 787, 1041
BsuTUI	ATCGAT	1 cut(s)	1276
BtsCI	GGATG	9 cut(s)	22, 94, 214, 304, 361, 526, 643, 979, 1255
BtsIMutI	CAGTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	1084
CfoI	GCGC	1 cut(s)	1206
Cfr13I	GGNCC	6 cut(s)	202, 245, 321, 786, 902, 1052
ClaI	ATCGAT	1 cut(s)	1276
CseI	GACGC	1 cut(s)	958
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	6 cut(s)	335, 652, 906, 1085, 1226, 1234
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	6 cut(s)	84, 137, 624, 913, 1029, 1176
Eam1104I	CTCTTC	5 cut(s)	116, 183, 601, 608, 1101
EarI	CTCTTC	5 cut(s)	116, 183, 601, 608, 1101
Eco31I	GGTCTC	2 cut(s)	460, 489
Eco47I	GGWCC	4 cut(s)	245, 321, 902, 1052
Eco81I	CCTNAGG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	3 cut(s)	202, 245, 786
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	204, 1036
FaeI	CATG	6 cut(s)	338, 655, 909, 1088, 1229, 1237
FaqI	GGGAC	3 cut(s)	231, 277, 915
FatI	CATG	6 cut(s)	334, 651, 905, 1084, 1225, 1233
FbaI	TGATCA	2 cut(s)	688, 1087
Fnu4HI	GCNGC	2 cut(s)	157, 953
FokI	GGATG	9 cut(s)	29, 101, 221, 311, 368, 513, 650, 986, 1262
Fsp4HI	GCNGC	2 cut(s)	157, 953
FspBI	CTAG	1 cut(s)	1101
GlaI	GCGC	1 cut(s)	1205
GluI	GCNGC	2 cut(s)	157, 953
HaeIII	GGCC	4 cut(s)	39, 204, 787, 1041
HapII	CCGG	3 cut(s)	36, 530, 556
HgaI	GACGC	1 cut(s)	958
HhaI	GCGC	1 cut(s)	1206
Hin1II	CATG	6 cut(s)	338, 655, 909, 1088, 1229, 1237
Hin6I	GCGC	1 cut(s)	1204
HinP1I	GCGC	1 cut(s)	1204
HincII	GTYRAC	2 cut(s)	7, 178
HindII	GTYRAC	2 cut(s)	7, 178
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	5 cut(s)	80, 536, 680, 842, 1033
HpaII	CCGG	3 cut(s)	36, 530, 556
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	3 cut(s)	7, 178, 340
Hpy188I	TCNGA	5 cut(s)	85, 415, 688, 805, 916
Hpy188III	TCNNGA	5 cut(s)	530, 755, 834, 896, 1085
Hpy8I	GTNNAC	3 cut(s)	7, 178, 340
HpyAV	CCTTC	5 cut(s)	136, 235, 276, 494, 888
HpyCH4III	ACNGT	2 cut(s)	309, 740
HpyCH4V	TGCA	2 cut(s)	909, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 784, 958, 1201
HpyF3I	CTNAG	6 cut(s)	84, 137, 624, 913, 1029, 1176
Hsp92II	CATG	6 cut(s)	338, 655, 909, 1088, 1229, 1237
HspAI	GCGC	1 cut(s)	1204
KflI	GGGWCCC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	529
Ksp22I	TGATCA	2 cut(s)	688, 1087
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	1 cut(s)	1240
MaeI	CTAG	1 cut(s)	1101
MaeIII	GTNAC	4 cut(s)	105, 418, 561, 740
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	3 cut(s)	388, 410, 874
MluCI	AATT	9 cut(s)	99, 362, 508, 583, 715, 848, 889, 1003, 1017
MroI	TCCGGA	1 cut(s)	529
MseI	TTAA	5 cut(s)	42, 147, 450, 855, 924
MspA1I	CMGCKG	1 cut(s)	1187
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	3 cut(s)	36, 530, 556
MspR9I	CCNGG	3 cut(s)	206, 556, 1038
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	206, 1038
MwoI	GCNNNNNNNGC	4 cut(s)	165, 784, 958, 1201
NciI	CCSGG	1 cut(s)	556
NlaIII	CATG	6 cut(s)	338, 655, 909, 1088, 1229, 1237
NlaIV	GGNNCC	5 cut(s)	203, 246, 247, 876, 903
NmuCI	GTSAC	4 cut(s)	105, 418, 561, 740
NspI	RCATGY	1 cut(s)	338
PagI	TCATGA	1 cut(s)	1084
PfeI	GAWTC	5 cut(s)	80, 536, 680, 842, 1033
PflMI	CCANNNNNTGG	1 cut(s)	1198
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	158, 954
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	204, 1036
PspGI	CCWGG	2 cut(s)	204, 1036
PspN4I	GGNNCC	5 cut(s)	203, 246, 247, 876, 903
PspPI	GGNCC	6 cut(s)	202, 245, 321, 786, 902, 1052
PspPPI	RGGWCCY	1 cut(s)	245
PsuI	RGATCY	3 cut(s)	388, 410, 874
PvuII	CAGCTG	1 cut(s)	1187
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	5 cut(s)	42, 147, 450, 855, 924
SatI	GCNGC	2 cut(s)	157, 953
Sau96I	GGNCC	6 cut(s)	202, 245, 321, 786, 902, 1052
ScrFI	CCNGG	3 cut(s)	206, 556, 1038
SfaNI	GCATC	1 cut(s)	1240
SinI	GGWCC	4 cut(s)	245, 321, 902, 1052
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	1100
Sse9I	AATT	9 cut(s)	99, 362, 508, 583, 715, 848, 889, 1003, 1017
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	1101
StyD4I	CCNGG	3 cut(s)	204, 554, 1036
TaaI	ACNGT	2 cut(s)	309, 740
TaqI	TCGA	4 cut(s)	53, 765, 811, 1276
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	9 cut(s)	99, 362, 508, 583, 715, 848, 889, 1003, 1017
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	5 cut(s)	80, 536, 680, 842, 1033
Tru1I	TTAA	5 cut(s)	42, 147, 450, 855, 924
Tru9I	TTAA	5 cut(s)	42, 147, 450, 855, 924
TscAI	CASTG	1 cut(s)	698
TseFI	GTSAC	4 cut(s)	105, 418, 561, 740
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	4 cut(s)	105, 418, 561, 740
TspDTI	ATGAA	7 cut(s)	198, 528, 596, 720, 876, 933, 1131
TspRI	CASTG	1 cut(s)	698
Van91I	CCANNNNNTGG	1 cut(s)	1198
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	4 cut(s)	245, 321, 902, 1052
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	3 cut(s)	583, 715, 889
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.