Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028370

Physical Location & Seq

Genomic Coordinates Reverse (-)

1723318 .. 1724007

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCATCCGGAGATCATCAGGAGCTTTCCTTCCGCTGAGTTTTATACAGAGTCATTAGAGGATGGTCCTCAGATCGAAGAGCGGACGGAATTTCATGGCATGACTATTGTTGTCTCGGACCCTTCTGTTTTTTTTTTTTTTTTTTTTCTCACTTGGGAAGCAAGAATCCGGAAATATATCTTTGGTGAATGTTGTGAGCGTTTCAGAAGTGATTTCAGAGTTGGGTTTGAGAAACAAGTGTATGTTACTACTATGGATGGTTACCAGGGACTGAAGAAGATGTTGCCATATTTTCTTGTGTTCGTGCAAATGATAAAAAATGACCACAACATTGGATTTGTGGGTCATTTTTGGCGGATTATTGCTGAGATCACTAGGGCAAAATCATCTATCCTGGTAGTGCAATCTGTATTAACACTGAGGAAGGACAAGCATTGGAGTAACCTAGTGGAAAGTGCTAAAGAAAATAGATTGTTTGAAGTTTCGGACTACGATAAATTTTTTAGTGACGAGAATCTGAAATCGTTTGCTGTCAAGAAAGAATCGTCGTTGTCAATGGGAGGAAGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006935 GO:0007154 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009875 GO:0009987 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0044706 GO:0048229 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

191

Amino Acids

22.33

Weight (kDa)

6.23

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0028370)

Species	Orthologous Gene IDs
malus_domestica	MD15G1032400.v1.1
pyrus_communis	pycom15g02810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	82
AccIII	TCCGGA	2 cut(s)	7, 168
AciI	CCGC	3 cut(s)	33, 82, 355
AcsI	RAATTY	2 cut(s)	89, 497
AcuI	CTGAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	264, 393
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	271
Aor13HI	TCCGGA	2 cut(s)	7, 168
ApoI	RAATTY	2 cut(s)	89, 497
AspS9I	GGNCC	2 cut(s)	65, 118
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	65, 118
BccI	CCATC	2 cut(s)	56, 251
BciT130I	CCWGG	2 cut(s)	266, 395
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	375, 446
Bme1390I	CCNGG	2 cut(s)	266, 395
Bme18I	GGWCC	2 cut(s)	65, 118
BmgT120I	GGNCC	2 cut(s)	65, 118
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	266, 395
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	2 cut(s)	7, 168
BseAI	TCCGGA	2 cut(s)	7, 168
BseBI	CCWGG	2 cut(s)	266, 395
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	4, 67, 262
BseMII	CTCAG	4 cut(s)	27, 83, 357, 410
BsiSI	CCGG	2 cut(s)	8, 169
BslFI	GGGAC	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	282
Bsp13I	TCCGGA	2 cut(s)	7, 168
Bsp143I	GATC	3 cut(s)	12, 72, 369
BspACI	CCGC	3 cut(s)	33, 82, 355
BspCNI	CTCAG	4 cut(s)	28, 82, 358, 411
BspEI	TCCGGA	2 cut(s)	7, 168
BspLI	GGNNCC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	72
BsrBI	CCGCTC	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	12, 72, 369
Bst2UI	CCWGG	2 cut(s)	266, 395
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	36, 69, 366, 419
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	4, 67, 262
BstKTI	GATC	3 cut(s)	15, 75, 372
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	12, 72, 369
BstNI	CCWGG	2 cut(s)	266, 395
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	264, 393
BstXI	CCANNNNNNTGG	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	4, 67, 262
BtsIMutI	CAGTG	1 cut(s)	416
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	65, 118
CviAII	CATG	2 cut(s)	95, 100
CviJI	RGCY	1 cut(s)	24
CviKI_1	RGCY	1 cut(s)	24
DdeI	CTNAG	4 cut(s)	36, 69, 366, 419
DpnI	GATC	3 cut(s)	14, 74, 371
DpnII	GATC	3 cut(s)	12, 72, 369
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	65, 118
Eco57I	CTGAAG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	264, 393
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	98, 103
FaiI	YATR	7 cut(s)	45, 96, 101, 177, 243, 254, 289
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	2 cut(s)	94, 99
FokI	GGATG	2 cut(s)	74, 269
FspBI	CTAG	2 cut(s)	375, 446
HapII	CCGG	2 cut(s)	8, 169
Hin1II	CATG	2 cut(s)	98, 103
HinfI	GANTC	4 cut(s)	50, 165, 514, 542
HpaII	CCGG	2 cut(s)	8, 169
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	6 cut(s)	72, 118, 206, 218, 487, 519
Hpy188III	TCNNGA	4 cut(s)	8, 19, 169, 535
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	39, 132, 418
HpyCH4V	TGCA	3 cut(s)	4, 307, 403
HpyF3I	CTNAG	4 cut(s)	36, 69, 366, 419
Hsp92II	CATG	2 cut(s)	98, 103
Kpn2I	TCCGGA	2 cut(s)	7, 168
Kzo9I	GATC	3 cut(s)	12, 72, 369
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	7 cut(s)	4, 21, 182, 251, 278, 380, 407
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	375, 446
MaeIII	GTNAC	4 cut(s)	244, 260, 440, 506
MalI	GATC	3 cut(s)	14, 74, 371
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	3 cut(s)	12, 72, 369
MboII	GAAGA	3 cut(s)	89, 286, 289
MluCI	AATT	2 cut(s)	89, 497
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	52, 78, 414, 554
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	2 cut(s)	7, 168
MseI	TTAA	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	2 cut(s)	8, 169
MspR9I	CCNGG	2 cut(s)	266, 395
MvaI	CCWGG	2 cut(s)	266, 395
NdeII	GATC	3 cut(s)	12, 72, 369
NlaIII	CATG	2 cut(s)	98, 103
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	165, 514, 542
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	264, 393
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	264, 393
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	65, 118
PstNI	CAGNNNCTG	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	413
Sau3AI	GATC	3 cut(s)	12, 72, 369
Sau96I	GGNCC	2 cut(s)	65, 118
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	266, 395
SetI	ASST	2 cut(s)	26, 447
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	2 cut(s)	65, 118
Sse9I	AATT	2 cut(s)	89, 497
SsiI	CCGC	3 cut(s)	33, 82, 355
SspMI	CTAG	2 cut(s)	375, 446
StyD4I	CCNGG	2 cut(s)	264, 393
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	89, 497
TfiI	GAWTC	3 cut(s)	165, 514, 542
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	65, 118
XapI	RAATTY	2 cut(s)	89, 497
XspI	CTAG	2 cut(s)	375, 446
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.