Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0029460

Physical Location & Seq

Genomic Coordinates Forward (+)

2043914 .. 2045227

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03260.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTATGATGTAATAGTTGGATATAATGAGAATACAGTTTCTCTCTCTGCATTCTCTCTCTTCGAATCGTTATCAGTATGTACAAATATCGAGGCTCTCTTCTTGCGTAGTAAAGTTAATCCTTCAGAAGACTTATCCTTTTCATTACACATTGTTATTGTTGTTTCAATAAAGGATTCCCATACCCGTTTCAGTGGGGTGCATGTCTTTGGGATGATGGGAGCAGCAATTGTTAAATCTGCAGAGTTTGCAGCACGGCTTTCAGGTGCTACACCCCCTCCAGCAAGTGTAGTGAGCCAGACTATTGACCTGCAGGTTGTTGGCATGCTGCTTGAAGGAATTTTTGGTGGTGCTGTCGGTACCACTGCATCTGTTGAAAATGTTGGCCTGCTTGGATTGACACACATAGGGGTAGGGGCTCACATTTGTTTCCTCTTATCTGCAGCTGCTGTTGGGATCACATTCATTCAGTTTGCAAATAATAATTCCTTGAGAAACATCTATGTTTTGGGTCTTTCCCTGTTTCTTGGGATTTCAATACCTCAATATTTTGTCTCAAACACCAGCCCGAATGGTGTCGGGCCAGTTAAAACAGACAGTGGATGGTTTGATGACATATTGAACACCATCTTCTCATTGAGCCTGACAGTGGCGATCGATCGTGGGGACGCTGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

227

Amino Acids

23.69

Weight (kDa)

5.0

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029460)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03260 pycom15g03280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	304, 318
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	82, 361
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	5 cut(s)	168, 335, 377, 537, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	385, 581
ApeKI	GCWGC	6 cut(s)	224, 251, 328, 443, 446, 671
ApoI	RAATTY	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	6 cut(s)	236, 263, 315, 433, 455, 658
BccI	CCATC	3 cut(s)	211, 597, 635
BceAI	ACGGC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	559
BfmI	CTRYAG	3 cut(s)	240, 311, 441
BfuAI	ACCTGC	2 cut(s)	304, 318
BisI	GCNGC	6 cut(s)	225, 252, 329, 444, 447, 672
BlsI	GCNGC	6 cut(s)	226, 253, 330, 445, 448, 673
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	511
Bsa29I	ATCGAT	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	657
BseGI	GGATG	2 cut(s)	219, 608
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	584
BseXI	GCAGC	6 cut(s)	236, 263, 315, 433, 455, 658
Bsh1285I	CGRYCG	2 cut(s)	657, 661
BshFI	GGCC	2 cut(s)	387, 583
BshNI	GGYRCC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	657
BsiEI	CGRYCG	2 cut(s)	657, 661
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmAI	GTCTC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	387, 583
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	3 cut(s)	456, 654, 658
BspANI	GGCC	2 cut(s)	387, 583
BspDI	ATCGAT	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	361
BspMAI	CTGCAG	3 cut(s)	244, 315, 445
BspMI	ACCTGC	2 cut(s)	304, 318
BspPI	GGATC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	584
BssMI	GATC	3 cut(s)	456, 654, 658
Bst4CI	ACNGT	3 cut(s)	37, 599, 649
Bst6I	CTCTTC	2 cut(s)	65, 104
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	326, 389
BstF5I	GGATG	2 cut(s)	219, 608
BstKTI	GATC	3 cut(s)	459, 657, 661
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	3 cut(s)	456, 654, 658
BstMCI	CGRYCG	2 cut(s)	657, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	2 cut(s)	206, 328
BstSFI	CTRYAG	3 cut(s)	240, 311, 441
BstV1I	GCAGC	6 cut(s)	236, 263, 315, 433, 455, 658
BstV2I	GAAGAC	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	2 cut(s)	387, 583
BsuTUI	ATCGAT	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	219, 608
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	4 cut(s)	199, 363, 604, 654
BveI	ACCTGC	2 cut(s)	304, 318
Cac8I	GCNNGC	2 cut(s)	326, 389
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	2 cut(s)	81, 360
CviAII	CATG	2 cut(s)	203, 325
CviJI	RGCY	9 cut(s)	95, 259, 297, 387, 419, 446, 567, 583, 642
CviKI_1	RGCY	9 cut(s)	95, 259, 297, 387, 419, 446, 567, 583, 642
CviQI	GTAC	2 cut(s)	81, 360
DpnI	GATC	3 cut(s)	458, 656, 660
DpnII	GATC	3 cut(s)	456, 654, 658
Eam1104I	CTCTTC	2 cut(s)	65, 104
EarI	CTCTTC	2 cut(s)	65, 104
Eco24I	GRGCYC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	2 cut(s)	206, 328
FaiI	YATR	9 cut(s)	6, 24, 79, 183, 204, 326, 407, 504, 617
FatI	CATG	2 cut(s)	202, 324
Fnu4HI	GCNGC	6 cut(s)	225, 252, 329, 444, 447, 672
FokI	GGATG	2 cut(s)	226, 615
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	6 cut(s)	225, 252, 329, 444, 447, 672
GluI	GCNGC	6 cut(s)	225, 252, 329, 444, 447, 672
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	387, 583
Hin1II	CATG	2 cut(s)	206, 328
HinfI	GANTC	2 cut(s)	65, 176
Hpy188I	TCNGA	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	132, 329
HpyCH4III	ACNGT	3 cut(s)	37, 599, 649
HpyCH4V	TGCA	8 cut(s)	50, 202, 242, 251, 313, 368, 443, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	206, 328
KpnI	GGTACC	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	456, 654, 658
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	6 cut(s)	236, 263, 315, 433, 455, 658
LweI	GCATC	1 cut(s)	377
MalI	GATC	3 cut(s)	458, 656, 660
MboI	GATC	3 cut(s)	456, 654, 658
MboII	GAAGA	4 cut(s)	52, 91, 140, 622
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	3 cut(s)	228, 339, 484
MnlI	CCTC	4 cut(s)	85, 288, 443, 552
MseI	TTAA	3 cut(s)	117, 234, 588
MspA1I	CMGCKG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	3 cut(s)	456, 654, 658
NlaIII	CATG	2 cut(s)	206, 328
NlaIV	GGNNCC	1 cut(s)	361
NspI	RCATGY	2 cut(s)	206, 328
NspV	TTCGAA	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	328
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	65, 176
PkrI	GCNGC	6 cut(s)	226, 253, 330, 445, 448, 673
Ple19I	CGATCG	2 cut(s)	657, 661
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	3 cut(s)	244, 315, 445
PstNI	CAGNNNCTG	1 cut(s)	449
PvuI	CGATCG	2 cut(s)	657, 661
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	82, 361
RsaNI	GTAC	2 cut(s)	81, 360
SaqAI	TTAA	3 cut(s)	117, 234, 588
SatI	GCNGC	6 cut(s)	225, 252, 329, 444, 447, 672
Sau3AI	GATC	3 cut(s)	456, 654, 658
Sau96I	GGNCC	1 cut(s)	581
SbfI	CCTGCAGG	1 cut(s)	315
SdaI	CCTGCAGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	5 cut(s)	268, 312, 318, 448, 544
SfaNI	GCATC	1 cut(s)	377
SfcI	CTRYAG	3 cut(s)	240, 311, 441
SfuI	TTCGAA	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
SphI	GCATGC	1 cut(s)	328
Sse8387I	CCTGCAGG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	228, 339, 484
SspI	AATATT	1 cut(s)	548
TaaI	ACNGT	3 cut(s)	37, 599, 649
TaqI	TCGA	3 cut(s)	63, 90, 657
TasI	AATT	3 cut(s)	228, 339, 484
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	65, 176
Tru1I	TTAA	3 cut(s)	117, 234, 588
Tru9I	TTAA	3 cut(s)	117, 234, 588
TscAI	CASTG	4 cut(s)	199, 370, 604, 654
TseI	GCWGC	6 cut(s)	224, 251, 328, 443, 446, 671
TspDTI	ATGAA	2 cut(s)	132, 454
TspRI	CASTG	4 cut(s)	199, 370, 604, 654
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	2 cut(s)	206, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.